Clone Sequence Records
BS15609.3prime Sequence
420 bp (420 high quality bases) assembled on 2006-12-21
> BS15609.3prime
TCCCTTTAGGGGCGCGCCAAACGAATGGTCTAGAAAGCTTCTAGGCTAGT
GGTCGACTTACCGGCACATTGATCAGATCGCTGACTCCCTCGGTCAGTTG
ACCGCGCATGGACAGGTACTCCACCAGCTTGGATCCGTGCTCACGTTCCT
CCTTGGCGGCCTTGAAGAAGTGCTCGGCGAATCCAGGGCGGTTGACGGTG
TCGCGGGAGAAGTAGGCGCCCATGGCCAAGTACTGGTAGGAGGCGTTGAT
CTCCTCCTGGATCTGATTGCGCATGCCCTTTATGCAGGCATCCTTCATGT
CCACCCAGTCCTTGGTAATCTCAGGAACAGCCAGGGAGCACTTGAAATCT
CCATAGGCCTGGGCCACCACGGCCAACAGGAGCAGGCTAGCAATTAGTTT
CACCATGTCGACTGATAACT
BS15609.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2216-PE | 366 | Fer1HCH-RE | 1..366 | 406..41 | 1780 | 99.4 | Minus |
| CG2216-PA | 618 | Fer1HCH-RA | 1..345 | 406..62 | 1725 | 100 | Minus |
| CG2216-PB | 618 | Fer1HCH-RB | 1..345 | 406..62 | 1725 | 100 | Minus |
| CG2216-PC | 618 | Fer1HCH-RC | 1..345 | 406..62 | 1725 | 100 | Minus |
| CG2216-PD | 618 | Fer1HCH-RD | 1..345 | 406..62 | 1725 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:58:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer1HCH-RE | 1197 | CG2216-RE | 107..474 | 406..39 | 1810 | 99.5 | Minus |
| Fer1HCH-RD | 1187 | CG2216-RD | 159..503 | 406..62 | 1725 | 100 | Minus |
| Fer1HCH-RC | 1227 | CG2216-RC | 199..543 | 406..62 | 1725 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:58:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30386296..30386596 | 39..339 | 1475 | 99.3 | Plus |
| 3R | 32079331 | 3R | 30387463..30387530 | 339..406 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 13:58:10 has no hits.
BS15609.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:39 Download gff for
BS15609.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2216-PE | 1..366 | 41..406 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:55 Download gff for
BS15609.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2216-PE | 1..366 | 41..406 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:12:49 Download gff for
BS15609.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RE | 107..474 | 39..406 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:50:19 Download gff for
BS15609.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RE | 107..474 | 39..406 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:50:19 Download gff for
BS15609.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30386296..30386596 | 39..339 | 99 | <- | Plus |
| 3R | 30387464..30387530 | 340..406 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:12:49 Download gff for
BS15609.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26212018..26212318 | 39..339 | 99 | <- | Plus |
| arm_3R | 26213186..26213252 | 340..406 | 100 | | Plus |
BS15609.5prime Sequence
396 bp (396 high quality bases) assembled on 2006-12-21
> BS15609.5prime
GAAGTTATCCCTTGACATGGTGAAACTAATTGCTAGCCTGCTCCTGTTGG
CCGTGGTGGCCCAGGCCTATGGAGATTTCAAGTGCTCCCTGGCTGTTCCT
GAGATTACCAAGGACTGGGTGGACATGAAGGATGCCTGCATAAAGGGCAT
GCGCAATCAGATCCAGGAGGAGATCAACGCCTCCTACCAGTACTTGGCCA
TGGGCGCCTACTTCTCCCGCGACACCGTCAACCGCCCTGGATTCGCCGAG
CACTTCTTCAAGGCCGCCAAGGAGGAACGTGAGCACGGATCCAAGCTGGT
GGAGTACCTGTCCATGCGCGGTCAACTGACCGAGGGAGTCAGCGATCTGA
TCAATGTGCCGGTAAGTCGACGACTCGCCTAGAAGCTTTCTAGACC
BS15609.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2216-PE | 366 | Fer1HCH-RE | 1..366 | 17..382 | 1830 | 100 | Plus |
| CG2216-PA | 618 | Fer1HCH-RA | 1..345 | 17..361 | 1725 | 100 | Plus |
| CG2216-PB | 618 | Fer1HCH-RB | 1..345 | 17..361 | 1725 | 100 | Plus |
| CG2216-PC | 618 | Fer1HCH-RC | 1..345 | 17..361 | 1725 | 100 | Plus |
| CG2216-PD | 618 | Fer1HCH-RD | 1..345 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 12:16:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer1HCH-RE | 1197 | CG2216-RE | 107..474 | 17..384 | 1840 | 100 | Plus |
| Fer1HCH-RD | 1187 | CG2216-RD | 159..503 | 17..361 | 1725 | 100 | Plus |
| Fer1HCH-RC | 1227 | CG2216-RC | 199..543 | 17..361 | 1725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 12:16:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30386296..30386596 | 384..84 | 1505 | 100 | Minus |
| 3R | 32079331 | 3R | 30387463..30387530 | 84..17 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 12:16:32 has no hits.
BS15609.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:40 Download gff for
BS15609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2216-PE | 1..366 | 17..382 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:57 Download gff for
BS15609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2216-PE | 1..366 | 17..382 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:33:48 Download gff for
BS15609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RE | 107..474 | 17..384 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 13:58:53 Download gff for
BS15609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RE | 107..474 | 17..384 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 13:58:53 Download gff for
BS15609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30386296..30386596 | 84..384 | 100 | <- | Minus |
| 3R | 30387464..30387530 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:33:48 Download gff for
BS15609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26212018..26212318 | 84..384 | 100 | <- | Minus |
| arm_3R | 26213186..26213252 | 17..83 | 100 | | Minus |
BS15609.complete Sequence
398 bp assembled on 2006-11-29
GenBank Submission: FJ637941
> BS15609.complete
GAAGTTATCAGTCGACATGGTGAAACTAATTGCTAGCCTGCTCCTGTTGG
CCGTGGTGGCCCAGGCCTATGGAGATTTCAAGTGCTCCCTGGCTGTTCCT
GAGATTACCAAGGACTGGGTGGACATGAAGGATGCCTGCATAAAGGGCAT
GCGCAATCAGATCCAGGAGGAGATCAACGCCTCCTACCAGTACTTGGCCA
TGGGCGCCTACTTCTCCCGCGACACCGTCAACCGCCCTGGATTCGCCGAG
CACTTCTTCAAGGCCGCCAAGGAGGAACGTGAGCACGGATCCAAGCTGGT
GGAGTACCTGTCCATGCGCGGTCAACTGACCGAGGGAGTCAGCGATCTGA
TCAATGTGCCGGTAAGTCGACGACTCGCCTAGAAGCTTTCTAGACCAT
BS15609.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:18:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer1HCH-RE | 366 | CG2216-PE | 1..366 | 17..382 | 1830 | 100 | Plus |
| Fer1HCH-RD | 618 | CG2216-PD | 1..345 | 17..361 | 1725 | 100 | Plus |
| Fer1HCH-RC | 618 | CG2216-PC | 1..345 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer1HCH-RE | 1197 | CG2216-RE | 107..474 | 17..384 | 1840 | 100 | Plus |
| Fer1HCH-RD | 1187 | CG2216-RD | 159..503 | 17..361 | 1725 | 100 | Plus |
| Fer1HCH-RC | 1227 | CG2216-RC | 199..543 | 17..361 | 1725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30386296..30386596 | 384..84 | 1505 | 100 | Minus |
| 3R | 32079331 | 3R | 30387463..30387530 | 84..17 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:18:13 has no hits.
BS15609.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:19 Download gff for
BS15609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RE | 1..366 | 17..382 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:15:29 Download gff for
BS15609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RE | 371..738 | 17..384 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:30 Download gff for
BS15609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RE | 107..472 | 17..382 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:19 Download gff for
BS15609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RE | 371..738 | 17..384 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:37 Download gff for
BS15609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RE | 107..472 | 17..382 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:37 Download gff for
BS15609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30386298..30386596 | 84..382 | 100 | <- | Minus |
| 3R | 30387464..30387530 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:30 Download gff for
BS15609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26212020..26212318 | 84..382 | 100 | <- | Minus |
| arm_3R | 26213186..26213252 | 17..83 | 100 | | Minus |
BS15609.pep Sequence
Translation from 16 to 381
> BS15609.pep
MVKLIASLLLLAVVAQAYGDFKCSLAVPEITKDWVDMKDACIKGMRNQIQ
EEINASYQYLAMGAYFSRDTVNRPGFAEHFFKAAKEEREHGSKLVEYLSM
RGQLTEGVSDLINVPVSRRLA*
BS15609.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer1HCH-PE | 121 | CG2216-PE | 1..121 | 1..121 | 614 | 100 | Plus |
| Fer1HCH-PD | 205 | CG2216-PD | 1..115 | 1..115 | 588 | 100 | Plus |
| Fer1HCH-PC | 205 | CG2216-PC | 1..115 | 1..115 | 588 | 100 | Plus |
| Fer1HCH-PB | 205 | CG2216-PB | 1..115 | 1..115 | 588 | 100 | Plus |
| Fer1HCH-PA | 205 | CG2216-PA | 1..115 | 1..115 | 588 | 100 | Plus |
