Clone Sequence Records
BS15611.complete Sequence
1979 bp assembled on 2009-12-07
GenBank Submission: KX800731
> BS15611.complete
GAAGTTATCAGTCGACATGTTTCGGTCGTGTGTGCCCAAGGCGATTACCT
CTAGTCGCTGTTTCGCGCGGATGTACTCGAAGGACGTGCGCTTTGGCTCC
GGAGTACGGGCAATGATGATCCGGGGCGTTGATATTCTGGCTGATGCCGT
TGCTGTGACCATGGGGCCCAAGGGTCGCAGTGTGATCGTGGAGCGACCAT
GGACCTCGCCGAAGATCACCAAGGACGGCTTCACGGTCGCGCGCTCGATT
GCCCTAAAGGACCAGCACATGAATCTGGGCGCCAAGTTGGTCCAGGATGT
GGCCGATAATACGAATGAGTCGGCGGGTGACGGCACGACCACAGCAACAG
TTTTGGCTCGAGCGATTGCCAAGGAAGGATTCAATCAGATTACCATGGGG
GCTAATCCCGTGGAGATTCGTCGAGGTGTCATGTTAGCTGTTGACGTCGT
AAAGGACAAGCTGAAGGAAATGTCCAAGGCAGTGGAAACGCGTGAGGAGA
TCCAACAAGTAGCCACCCTCTCCGCGAACGGGGATACTGAAATTGGGCGG
CTCATTGGTGAGGCCACCGACAAAGTGGGTCCAAGAGGAACTATTACTGT
AAAGGATGGCAAGCGCCTGAAGGACGAGCTAAATATTATCCAGGGCCTGC
GCTTCGACAACGGCTATGTGTCGCCCTTTTTCGTAAACAGCTCCAAGGGG
TCCAAGGTGGAGTTTGCCAACGCCCTTGTAATGATATCCCTGAAGAAGAT
CACTGGACTCTCGCAAATAGTTAAAGGTCTGGAGCAATCCCTGAGGCAGC
GTCGTCCCCTGATCATCATAGCCGAGGACATCAGCGGGGAAGCCCTCAAT
GCTTTGGTCCTGAACAAGCTCAGGTTGGGCCTCCAGGTGTGCGCCGTCAA
ATCGCCCAGCTATGGACACCACCGCAAGGAGCTTATAGGCGATATATCCG
CTGCCACGGGAGCAACTATTTTCGGCGATGACATCAACTATTCCAAAATG
GAGGAGGCTAAGCTGGAGGATCTGGGTCAGGTTGGCGAGGCTGTGATTAG
CAAGGACAGCACCATGCTCCTGCAGGGCAAACCCAAGACAGGACTTTTGG
AAATGCGCATCCAGCAAATTCAAGATGAACTGGCGGAAAAGCAAATCAAG
CCAGAGCAGCGGGATCGTCTGCGCCAACGCCTCTCCGCCCTCACGAAGGG
CGTGGCAGTGCTGCACATTGGTGGAGGCAGTGAAGTTGAGGTGAATGAGA
AAAAGGACCGTGTGGTGGACGCCTTGAATGCCACTCGAGCGGCCATCGAA
GAGGGAATTGTCCCAGGTGGCGGTACGGCCTTTTTGCGCTGCATTCCCTA
CCTCCAGGAACTCAAAACGGAGAGTGCAGATCTCCAGAAGGGCGTCGATA
TCGTCTGCAATGCCCTGAGGATGCCTTGCCAGACCATAGCTCAAAACGCC
GGAGTTGATGGCCCAATGGTGGTGGCCAAGGTGTTGAATGGCTCGGAAGA
CTACGGCTACGATGCCATGGGCGATGAGTACTGTCGGCTGGTCGAGAAGG
GCATTATTGATCCCACAAAGGTGCTGCGGACCGCCATCACGGATGCAGCT
GGAGTGGCCTCTCTTCTGAGCACCACCGAGGTGGTTATCACCGACTCCCG
GAACGATGATCTTTTGTCCAAGTTGTCAGGAGCTGGCGGCGGAATGGATG
ATGGACTGGACATGAACATGGGTGGCTTAGAGGAGCTGGCAGCCTTAAGT
GGATTGGGTGGCATGGGTGGTATGGGAGGCATGGGTGGTATGGGAGGTAT
GGGAGGAATGGGAGGTGGATTCGGCGGAATGGGCGCTGGTGGCGGAATGA
GCGCTTCTGCCAGCAATGACGGTCCCACTGCCGAGGAGATGAATGAAATG
GTCAAGGCTATTCCCGGCATGGAGCAAGTAGAGGTGCGTGACATTGACAG
TGGGATGATGTAGAAGCTTTCTACACCAT
BS15611.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:47:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp60B-RA | 1947 | CG2830-PA | 1..1947 | 17..1963 | 9735 | 100 | Plus |
| Hsp60-RB | 1722 | CG12101-PB | 70..456 | 80..466 | 615 | 77.3 | Plus |
| Hsp60-RA | 1722 | CG12101-PA | 70..456 | 80..466 | 615 | 77.3 | Plus |
| Hsp60-RB | 1722 | CG12101-PB | 1398..1631 | 1411..1644 | 345 | 76.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp60B-RA | 2203 | CG2830-RA | 147..2095 | 17..1965 | 9745 | 100 | Plus |
| Hsp60-RB | 2328 | CG12101-RB | 193..579 | 80..466 | 615 | 77.3 | Plus |
| Hsp60-RA | 2357 | CG12101-RA | 222..608 | 80..466 | 615 | 77.3 | Plus |
| Hsp60-RB | 2328 | CG12101-RB | 1521..1754 | 1411..1644 | 345 | 76.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 728508..730456 | 17..1965 | 9745 | 100 | Plus |
| X | 23542271 | X | 11110110..11110496 | 80..466 | 615 | 77.3 | Plus |
| 2L | 23513712 | 2L | 5669058..5669388 | 108..438 | 425 | 75.2 | Plus |
| X | 23542271 | X | 11111501..11111734 | 1411..1644 | 345 | 76.5 | Plus |
| 2L | 23513712 | 2L | 5670500..5670578 | 1553..1631 | 230 | 86.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:47:41 has no hits.
BS15611.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:21 Download gff for
BS15611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60B-RA | 103..2043 | 23..1963 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:57 Download gff for
BS15611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60B-RA | 153..2093 | 23..1963 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:26 Download gff for
BS15611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60B-RA | 103..2043 | 23..1963 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:55 Download gff for
BS15611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60B-RA | 153..2093 | 23..1963 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:55 Download gff for
BS15611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 728514..730454 | 23..1963 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:57 Download gff for
BS15611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 728514..730454 | 23..1963 | 100 | | Plus |
BS15611.3prime Sequence
917 bp (778 high quality bases) assembled on 2006-12-21
> BS15611.3prime
TCCCATAAGAGGGCGCGCCAAACGAATGGNCTAGAAAGCTTCTACCTTAT
ACGGCTGTCAATGTCACGCACCTCTACTTGCTCCATGCCGGGAATAGCCT
TGACCATTTCATTCATCTCCTCGGCAGTGGGACCGTCATTGCTGGCAGAA
GCGCTCATTCCGCCACCAGCGCCCATTCCGCCGAATCCACCTCCCATTCC
TCCCATACCTCCCATACCACCCATGCCTCCCATACCACCCATGCCACCCA
ATCCACTTAAGGCTGCCAGCTCCTCTAAGCCACCCATGTTCATGTCCAGT
CCATCATCCATTCCGCCGCCAGCTCCTGACAACTTGGACAAAAGATCATC
GTTCCGGGAGTCGGTGATAACCACCTCGGTGGTGCTCAGAAGAGAGGCCA
CTCCAGCTGCATCCGTGATGGCGGTCCGCAGCACCTTTGTGGGATCAATA
ATGCCCTTCTCGACCAGCCGACAGTACTCATCGCCCATGGCATCGTAGCC
GTAGTCTTCCGAGCCATTCAACACCTTGGCCACCACCATTGGGCCATCAA
CTCCGGCGTTTTGAGCTATGGTCTGGCAAGGCATCCTCAGGGCATTGCAG
ACGATATCGACGCCCTTCTGGAGATCTGCACTCTCCGTTTTGAGTTCCTG
GAGGTAGGGAATGCAGCGCAAAAAGGCCGTACCGCCACCTGGGACAATTC
CCTCTTCGATGGCCGCTCGAGTGGCATTCAAGGCGTCCACCACACGGTCC
TTTTTCTCATTCACCTCAACTTCACTGCCTCCACCAATGTGCAGCACTGC
CACGCCCTTCGTGAGGGCGGAGAGGCGTTGGCGCAGACGATCCCGCTGCT
CTGGCTTGATTTGCTTTTCCGCCAGTTCATCTTGAATTTGCTGGATGCGC
ATTTCCAAAAAGTCTGT
BS15611.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2830-PA | 1947 | Hsp60B-RA | 1079..1934 | 910..55 | 4280 | 100 | Minus |
| CG7235-PA | 1731 | CG7235-RA | 1552..1618 | 452..386 | 135 | 88 | Minus |
| CG7235-PC | 1731 | CG7235-RC | 1552..1618 | 452..386 | 135 | 88 | Minus |
| CG7235-PB | 1731 | CG7235-RB | 1552..1618 | 452..386 | 135 | 88 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:45:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp60B-RA | 2203 | CG2830-RA | 1225..2080 | 910..55 | 4280 | 100 | Minus |
| Hsp60-RB | 2328 | CG12101-RB | 1521..1754 | 594..361 | 355 | 78.1 | Minus |
| Hsp60-RA | 2357 | CG12101-RA | 1550..1783 | 594..361 | 355 | 78.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:45:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 729586..730441 | 910..55 | 4280 | 100 | Minus |
| X | 23542271 | X | 11111501..11111734 | 594..361 | 345 | 76.5 | Minus |
| 2L | 23513712 | 2L | 5670500..5670578 | 452..374 | 230 | 86.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:45:28 has no hits.
BS15611.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:44 Download gff for
BS15611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2830-PA | 1072..1940 | 49..917 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:00 Download gff for
BS15611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2830-PA | 1072..1940 | 49..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 23:20:20 Download gff for
BS15611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60B-RA | 1218..2086 | 49..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:57:38 Download gff for
BS15611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60B-RA | 1218..2086 | 49..917 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:57:38 Download gff for
BS15611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 729579..730447 | 49..917 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 23:20:20 Download gff for
BS15611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 729579..730447 | 49..917 | 99 | | Minus |
BS15611.5prime Sequence
882 bp (767 high quality bases) assembled on 2006-12-21
> BS15611.5prime
GAAGTTATCCTTTGAGATGTTTCGGTCGTGTGTGCCCAAGGCGATTACCT
CTAGTCGCTGTTTCGCGCGGATGTACTCGAAGGACGTGCGCTTTGGCTCC
GGAGTACGGGCAATGATGATCCGGGGCGTTGATATTCTGGCTGATGCCGT
TGCTGTGACCATGGGGCCCAAGGGTCGCAGTGTGATCGTGGAGCGACCAT
GGACCTCGCCGAAGATCACCAAGGACGGCTTCACGGTCGCGCGCTCGATT
GCCCTAAAGGACCAGCACATGAATCTGGGCGCCAAGTTGGTCCAGGATGT
GGCCGATAATACGAATGAGTCGGCGGGTGACGGCACGACCACAGCAACAG
TTTTGGCTCGAGCGATTGCCAAGGAAGGATTCAATCAGATTACCATGGGG
GCTAATCCCGTGGAGATTCGTCGAGGTGTCATGTTAGCTGTTGACGTCGT
AAAGGACAAGCTGAAGGAAATGTCCAAGGCAGTGGAAACGCGTGAGGAGA
TCCAACAAGTAGCCACCCTCTCCGCGAACGGGGATACTGAAATTGGGCGG
CTCATTGGTGAGGCCACCGACAAAGTGGGTCCAAGAGGAACTATTACTGT
AAAGGATGGCAAGCGCCTGAAGGACGAGCTAAATATTATCCAGGGCCTGC
GCTTCGACAACGGCTATGTGTCGCCCTTTTTCGTAAACAGCTCCAAGGGG
TCCAAGGTGGAGTTTGCCAACGCCCTTGTAATGATATCCCTGAAGAAGAT
CACTGGACTCTCGCAAATAGTTAAAGGTCTGGAGCAATCCCTGAGGCAGC
GTCGTCCCCTGATCATCATAGCCGAGGACATCAGCGGGGAAAGCCCTCAT
TGCTTTGGTCCTGAACAAGCTCAGGTTGGGGC
BS15611.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2830-PA | 1947 | Hsp60B-RA | 1..825 | 17..841 | 4125 | 100 | Plus |
| CG2830-PA | 1947 | Hsp60B-RA | 824..863 | 841..880 | 175 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:56:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp60B-RA | 2203 | CG2830-RA | 147..1009 | 17..880 | 4280 | 99.8 | Plus |
| Hsp60-RB | 2328 | CG12101-RB | 193..579 | 80..466 | 615 | 77.3 | Plus |
| Hsp60-RA | 2357 | CG12101-RA | 222..608 | 80..466 | 615 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:56:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 728508..729370 | 17..880 | 4255 | 99.8 | Plus |
| X | 23542271 | X | 11110110..11110496 | 80..466 | 615 | 77.3 | Plus |
| 2L | 23513712 | 2L | 5669058..5669388 | 108..438 | 425 | 75.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:56:53 has no hits.
BS15611.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:45 Download gff for
BS15611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2830-PA | 1..864 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:01 Download gff for
BS15611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2830-PA | 1..864 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 16:38:14 Download gff for
BS15611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60B-RA | 147..1010 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:26 Download gff for
BS15611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60B-RA | 147..1010 | 17..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:26 Download gff for
BS15611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 728508..729371 | 17..882 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 16:38:14 Download gff for
BS15611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 728508..729371 | 17..882 | 99 | | Plus |
BS15611.pep Sequence
Translation from 16 to 1962
> BS15611.pep
MFRSCVPKAITSSRCFARMYSKDVRFGSGVRAMMIRGVDILADAVAVTMG
PKGRSVIVERPWTSPKITKDGFTVARSIALKDQHMNLGAKLVQDVADNTN
ESAGDGTTTATVLARAIAKEGFNQITMGANPVEIRRGVMLAVDVVKDKLK
EMSKAVETREEIQQVATLSANGDTEIGRLIGEATDKVGPRGTITVKDGKR
LKDELNIIQGLRFDNGYVSPFFVNSSKGSKVEFANALVMISLKKITGLSQ
IVKGLEQSLRQRRPLIIIAEDISGEALNALVLNKLRLGLQVCAVKSPSYG
HHRKELIGDISAATGATIFGDDINYSKMEEAKLEDLGQVGEAVISKDSTM
LLQGKPKTGLLEMRIQQIQDELAEKQIKPEQRDRLRQRLSALTKGVAVLH
IGGGSEVEVNEKKDRVVDALNATRAAIEEGIVPGGGTAFLRCIPYLQELK
TESADLQKGVDIVCNALRMPCQTIAQNAGVDGPMVVAKVLNGSEDYGYDA
MGDEYCRLVEKGIIDPTKVLRTAITDAAGVASLLSTTEVVITDSRNDDLL
SKLSGAGGGMDDGLDMNMGGLEELAALSGLGGMGGMGGMGGMGGMGGMGG
GFGGMGAGGGMSASASNDGPTAEEMNEMVKAIPGMEQVEVRDIDSGMM*
BS15611.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:08:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp60B-PA | 648 | CG2830-PA | 1..648 | 1..648 | 3249 | 100 | Plus |
| Hsp60-PB | 573 | CG12101-PB | 1..572 | 1..595 | 1790 | 62 | Plus |
| Hsp60-PA | 573 | CG12101-PA | 1..572 | 1..595 | 1790 | 62 | Plus |
| Hsp60C-PB | 576 | CG7235-PB | 22..575 | 16..593 | 1708 | 59.3 | Plus |
| Hsp60C-PC | 576 | CG7235-PC | 22..575 | 16..593 | 1708 | 59.3 | Plus |
