Clone Sequence Records
BS15613.complete Sequence
1136 bp assembled on 2009-12-07
GenBank Submission: KX803253
> BS15613.complete
GAAGTTATCAGTCGACATGGCGGCCCAGACGATACTGTTTGATTTCACGC
TGGACAAGGACAAGACGGCGGATGAGGAGGCGCGCCTCCAGGTGGCCAAA
ATCCTGCGTAACGAGCTGGAGCAGCTGTTCCCCCAGCTGGAGCTGGCCTA
CTCGATGGAGTCGCCGGAAAACGGCTACTTTGCGGTGCTGCACGAGAACA
AGGACACGGTGATTACCTGCCGCATCTTCCAGCACGGCCTGCTGACGCTC
AACGTGGAGTACTTCCTGCCCGATGGCAAGGAGCCGAGCATATCCTTCGA
CACCATGCGCACCATGGAACTGATTTTGCGGCAGAAATTTGATTCCGATC
GGTCCAAGTACTTGCCGCCGATTAAACGCGGCGGATATATCGACATATAT
ATGACTAGCTCAGATGAGCGCATCATCGAGTACGACATCGACAAGGTGGT
CTTCGAGGCGCGCTCGCCCTTCCAGAAGATTCAAATCATGCACTCCAAGA
CCCTGGGCAACATGCTGCTCCTCGACGAGCTGCAGAACATTGCTGAATCC
GATTTGATTTACACGGAGACCCTGATGTGTCGCGGCGTGGAGAACTACGA
GGGCAAGGAGATCTGCATCCTGGGCGGCGGTGATGGCGCCTTGTTGTACG
AGCTACTCAAGGAGAATCCGAAGCATGTGGTGATGCTGGAGATCGATGAG
CTTGTGATGCAAACCTGCAACAAATACCTCAACGTGATCTGCGGCGATGT
GCTGGAGAAACGCAAGGGCGATCAGTACGAGATCATTGTGGGCGACTGTG
TGGAGTACTTGAAGAAGTTCATCGCCGAGGGCCGCAAGTTCGACTACGTT
TTTGGGGATCTTACGGACATACCCATAACCGATGCCCCGGAGGGCGAGAC
CTGGGATTTCATTCGTACCATCTTCGAGCACTCCTTCAAGGTGCTGAAAC
CCGACGGAAAGTATTTGACTCATGGCAATGGGTCCACCTGCAAGGTGCAG
CTGCGTCTATTCGAGGAGCAGTTGAATTTGCTGCGTCCCAAGGTGAAGTT
CACCACCACCAAGGCGTTTGTGCCGTCGTTCATGGAAGAGTGGCTCTTCT
ACCAAGTGACTTTCGCCTGAAAGCTTTCTAGACCAT
BS15613.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:59:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4300-RD | 1377 | CG4300-PD | 1..1104 | 17..1120 | 5520 | 100 | Plus |
CG4300-RA | 1104 | CG4300-PA | 1..1104 | 17..1120 | 5520 | 100 | Plus |
CG4300-RC | 1374 | CG4300-PC | 391..1101 | 410..1120 | 3555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:59:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4300-RD | 1983 | CG4300-RD | 78..1181 | 17..1120 | 5520 | 100 | Plus |
CG4300-RA | 1983 | CG4300-RA | 78..1181 | 17..1120 | 5520 | 100 | Plus |
CG4300-RC | 1980 | CG4300-RC | 468..1178 | 410..1120 | 3555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:59:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12272458..12273041 | 1120..537 | 2920 | 100 | Minus |
3L | 28110227 | 3L | 12276890..12277174 | 301..17 | 1425 | 100 | Minus |
3L | 28110227 | 3L | 12273498..12273623 | 536..411 | 630 | 100 | Minus |
3L | 28110227 | 3L | 12275076..12275187 | 413..302 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:59:26 has no hits.
BS15613.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:05 Download gff for
BS15613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4300-RA | 93..1195 | 17..1119 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:03:04 Download gff for
BS15613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4300-RA | 78..1180 | 17..1119 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:15:08 Download gff for
BS15613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4300-RA | 93..1195 | 17..1119 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:25 Download gff for
BS15613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4300-RA | 78..1180 | 17..1119 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:25 Download gff for
BS15613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12272459..12273041 | 537..1119 | 100 | <- | Minus |
3L | 12273498..12273620 | 414..536 | 100 | <- | Minus |
3L | 12275076..12275187 | 302..413 | 100 | <- | Minus |
3L | 12276890..12277174 | 17..301 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:03:04 Download gff for
BS15613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12266598..12266720 | 414..536 | 100 | <- | Minus |
arm_3L | 12268176..12268287 | 302..413 | 100 | <- | Minus |
arm_3L | 12269990..12270274 | 17..301 | 100 | | Minus |
arm_3L | 12265559..12266141 | 537..1119 | 100 | <- | Minus |
BS15613.3prime Sequence
864 bp (759 high quality bases) assembled on 2006-12-21
> BS15613.3prime
ATGGTCTAGAAAGCTTTCAGGCTAAAGTCACTTGGTAGAAGAGCCACTCT
TCCATGAACGACGGCACAAACGCCTTGGTGGTGGTGAACTTCACCTTGGG
ACGCAGCAAATTCAACTGCTCCTCGAATAGACGCAGCTGCACCTTGCAGG
TGGACCCATTGCCATGAGTCAAATACTTTCCGTCGGGTTTCAGCACCTTG
AAGGAGTGCTCGAAGATGGTACGAATGAAATCCCAGGTCTCGCCCTCCGG
GGCATCGGTTATGGGTATGTCCGTAAGATCCCCAAAAACGTAGTCGAACT
TGCGGCCCTCGGCGATGAACTTCTTCAAGTACTCCACACAGTCGCCCACA
ATGATCTCGTACTGATCGCCCTTGCGTTTCTCCAGCACATCGCCGCAGAT
CACGTTGAGGTATTTGTTGCAGGTTTGCATCACAAGCTCATCGATCTCCA
GCATCACCACATGCTTCGGATTCTCCTTGAGTAGCTCGTACAACAAGGCG
CCATCACCGCCGCCCAGGATGCAGATCTCCTTGCCCTCGTAGTTCTCCAC
GCCGCGACACATCAGGGTCTCCGTGTAAATCAAATCGGATTCAGCAATGT
TCTGCAGCTCGTCGAGGAGCAGCATGTTGCCCAGGGTCTTGGAGTGCATG
ATTTGAATCTTCTGGAAGGGCGAGCGCGCCTCGAAGACCACCTTGTCGAT
GTCGTACTCGATGATGCGCTCATCTGAGCTAGTCATATATATGTCGATAT
ATCCGCCGCGTTTAATCGGCGGCAAGTACTTGGACCGATCGGAATCAAAT
TTCTGCCGCAAAATCAGTTCCATGGTGCGCATGGTGTCGAAGGATATGCT
CGGCTCCTTGCCAT
BS15613.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4300-PA | 1104 | CG4300-RA | 257..1104 | 864..17 | 4215 | 99.8 | Minus |
CG4300-PB | 1101 | CG4300-RB | 391..1101 | 727..17 | 3530 | 99.8 | Minus |
CG4300-PB | 1101 | CG4300-RB | 257..286 | 864..835 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4300-RD | 1983 | CG4300-RD | 334..1187 | 864..12 | 4230 | 99.8 | Minus |
CG4300-RA | 1983 | CG4300-RA | 334..1187 | 864..12 | 4230 | 99.8 | Minus |
CG4300-RC | 1980 | CG4300-RC | 468..1184 | 727..12 | 3545 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12272458..12273041 | 17..600 | 2905 | 99.8 | Plus |
3L | 28110227 | 3L | 12273498..12273623 | 601..726 | 630 | 100 | Plus |
3L | 28110227 | 3L | 12275076..12275187 | 724..835 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:22:38 has no hits.
BS15613.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:48 Download gff for
BS15613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4300-PA | 257..1104 | 17..864 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:05 Download gff for
BS15613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4300-PA | 257..1104 | 17..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 13:01:26 Download gff for
BS15613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4300-RA | 334..1190 | 6..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:42:47 Download gff for
BS15613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4300-RA | 334..1190 | 6..864 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:42:47 Download gff for
BS15613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12272449..12273041 | 6..600 | 99 | <- | Plus |
3L | 12273498..12273620 | 601..723 | 100 | <- | Plus |
3L | 12275076..12275187 | 724..835 | 100 | <- | Plus |
3L | 12276890..12276918 | 836..864 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 13:01:26 Download gff for
BS15613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12266598..12266720 | 601..723 | 100 | <- | Plus |
arm_3L | 12265549..12266141 | 6..600 | 99 | <- | Plus |
arm_3L | 12268176..12268287 | 724..835 | 100 | <- | Plus |
arm_3L | 12269990..12270018 | 836..864 | 100 | | Plus |
BS15613.5prime Sequence
855 bp (811 high quality bases) assembled on 2006-12-21
> BS15613.5prime
GAAGTTATCCTTCGAGATGGCGGCCCAGACGATACTGTTTGATTTCACGC
TGGACAAGGACAAGACGGCGGATGAGGAGGCGCGCCTCCAGGTGGCCAAA
ATCCTGCGTAACGAGCTGGAGCAGCTGTTCCCCCAGCTGGAGCTGGCCTA
CTCGATGGAGTCGCCGGAAAACGGCTACTTTGCGGTGCTGCACGAGAACA
AGGACACGGTGATTACCTGCCGCATCTTCCAGCACGGCCTGCTGACGCTC
AACGTGGAGTACTTCCTGCCCGATGGCAAGGAGCCGAGCATATCCTTCGA
CACCATGCGCACCATGGAACTGATTTTGCGGCAGAAATTTGATTCCGATC
GGTCCAAGTACTTGCCGCCGATTAAACGCGGCGGATATATCGACATATAT
ATGACTAGCTCAGATGAGCGCATCATCGAGTACGACATCGACAAGGTGGT
CTTCGAGGCGCGCTCGCCCTTCCAGAAGATTCAAATCATGCACTCCAAGA
CCCTGGGCAACATGCTGCTCCTCGACGAGCTGCAGAACATTGCTGAATCC
GATTTGATTTACACGGAGACCCTGATGTGTCGCGGCGTGGAGAACTACGA
GGGCAAGGAGATCTGCATCCTGGGCGGCGGTGATGGCGCCTTGTTGTACG
AGCTACTCAAGGAGAATCCGAAGCATGTGGTGATGCTGGAGATCGATGAG
CTTGTGATGCAAACCTGCAACAAATACCTCAACGTGATCTGCGGCGATGT
GCTGGAGAAACGCAAGGGCGATCAGTACGAGATCATTGTGGGCGACTGTG
TGGAGTACTTGAAGAAGTTCATCGCCGAGGGCCGCAAGTTCGACTACGTT
TTTGG
BS15613.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4300-PA | 1104 | CG4300-RA | 1..839 | 17..855 | 4195 | 100 | Plus |
CG4300-PB | 1101 | CG4300-RB | 391..836 | 410..855 | 2230 | 100 | Plus |
CG4300-PB | 1101 | CG4300-RB | 1..286 | 17..302 | 1430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4300-RD | 1983 | CG4300-RD | 77..916 | 16..855 | 4200 | 100 | Plus |
CG4300-RA | 1983 | CG4300-RA | 77..916 | 16..855 | 4200 | 100 | Plus |
CG4300-RC | 1980 | CG4300-RC | 468..913 | 410..855 | 2230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12272723..12273041 | 855..537 | 1595 | 100 | Minus |
3L | 28110227 | 3L | 12276890..12277175 | 301..16 | 1430 | 100 | Minus |
3L | 28110227 | 3L | 12273498..12273623 | 536..411 | 630 | 100 | Minus |
3L | 28110227 | 3L | 12275076..12275187 | 413..302 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:12:19 has no hits.
BS15613.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:50 Download gff for
BS15613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4300-PA | 1..839 | 17..855 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:07 Download gff for
BS15613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4300-PA | 1..839 | 17..855 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 13:00:36 Download gff for
BS15613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4300-RA | 77..916 | 16..855 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:18:14 Download gff for
BS15613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4300-RA | 77..916 | 16..855 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:18:14 Download gff for
BS15613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12272723..12273041 | 537..855 | 100 | <- | Minus |
3L | 12273498..12273620 | 414..536 | 100 | <- | Minus |
3L | 12275076..12275187 | 302..413 | 100 | <- | Minus |
3L | 12276890..12277175 | 16..301 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 13:00:36 Download gff for
BS15613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12265823..12266141 | 537..855 | 100 | <- | Minus |
arm_3L | 12266598..12266720 | 414..536 | 100 | <- | Minus |
arm_3L | 12268176..12268287 | 302..413 | 100 | <- | Minus |
arm_3L | 12269990..12270275 | 16..301 | 100 | | Minus |
BS15613.pep Sequence
Translation from 16 to 1119
> BS15613.pep
MAAQTILFDFTLDKDKTADEEARLQVAKILRNELEQLFPQLELAYSMESP
ENGYFAVLHENKDTVITCRIFQHGLLTLNVEYFLPDGKEPSISFDTMRTM
ELILRQKFDSDRSKYLPPIKRGGYIDIYMTSSDERIIEYDIDKVVFEARS
PFQKIQIMHSKTLGNMLLLDELQNIAESDLIYTETLMCRGVENYEGKEIC
ILGGGDGALLYELLKENPKHVVMLEIDELVMQTCNKYLNVICGDVLEKRK
GDQYEIIVGDCVEYLKKFIAEGRKFDYVFGDLTDIPITDAPEGETWDFIR
TIFEHSFKVLKPDGKYLTHGNGSTCKVQLRLFEEQLNLLRPKVKFTTTKA
FVPSFMEEWLFYQVTFA*
BS15613.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:13:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4300-PA | 367 | CG4300-PA | 1..367 | 1..367 | 1915 | 100 | Plus |
CG4300-PD | 458 | CG4300-PD | 1..367 | 1..367 | 1915 | 100 | Plus |
CG4300-PB | 366 | CG4300-PB | 1..366 | 1..367 | 1766 | 92.9 | Plus |
CG4300-PC | 457 | CG4300-PC | 1..366 | 1..367 | 1766 | 92.9 | Plus |
SpdS-PC | 287 | CG8327-PC | 26..196 | 141..320 | 156 | 30.5 | Plus |