Clone BS15613 Report

Search the DGRC for BS15613

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:156
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG4300-RA
Protein status:BS15613.pep: full length peptide match
Sequenced Size:1136

Clone Sequence Records

BS15613.complete Sequence

1136 bp assembled on 2009-12-07

GenBank Submission: KX803253

> BS15613.complete
GAAGTTATCAGTCGACATGGCGGCCCAGACGATACTGTTTGATTTCACGC
TGGACAAGGACAAGACGGCGGATGAGGAGGCGCGCCTCCAGGTGGCCAAA
ATCCTGCGTAACGAGCTGGAGCAGCTGTTCCCCCAGCTGGAGCTGGCCTA
CTCGATGGAGTCGCCGGAAAACGGCTACTTTGCGGTGCTGCACGAGAACA
AGGACACGGTGATTACCTGCCGCATCTTCCAGCACGGCCTGCTGACGCTC
AACGTGGAGTACTTCCTGCCCGATGGCAAGGAGCCGAGCATATCCTTCGA
CACCATGCGCACCATGGAACTGATTTTGCGGCAGAAATTTGATTCCGATC
GGTCCAAGTACTTGCCGCCGATTAAACGCGGCGGATATATCGACATATAT
ATGACTAGCTCAGATGAGCGCATCATCGAGTACGACATCGACAAGGTGGT
CTTCGAGGCGCGCTCGCCCTTCCAGAAGATTCAAATCATGCACTCCAAGA
CCCTGGGCAACATGCTGCTCCTCGACGAGCTGCAGAACATTGCTGAATCC
GATTTGATTTACACGGAGACCCTGATGTGTCGCGGCGTGGAGAACTACGA
GGGCAAGGAGATCTGCATCCTGGGCGGCGGTGATGGCGCCTTGTTGTACG
AGCTACTCAAGGAGAATCCGAAGCATGTGGTGATGCTGGAGATCGATGAG
CTTGTGATGCAAACCTGCAACAAATACCTCAACGTGATCTGCGGCGATGT
GCTGGAGAAACGCAAGGGCGATCAGTACGAGATCATTGTGGGCGACTGTG
TGGAGTACTTGAAGAAGTTCATCGCCGAGGGCCGCAAGTTCGACTACGTT
TTTGGGGATCTTACGGACATACCCATAACCGATGCCCCGGAGGGCGAGAC
CTGGGATTTCATTCGTACCATCTTCGAGCACTCCTTCAAGGTGCTGAAAC
CCGACGGAAAGTATTTGACTCATGGCAATGGGTCCACCTGCAAGGTGCAG
CTGCGTCTATTCGAGGAGCAGTTGAATTTGCTGCGTCCCAAGGTGAAGTT
CACCACCACCAAGGCGTTTGTGCCGTCGTTCATGGAAGAGTGGCTCTTCT
ACCAAGTGACTTTCGCCTGAAAGCTTTCTAGACCAT

BS15613.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG4300-RD 1377 CG4300-PD 1..1104 17..1120 5520 100 Plus
CG4300-RA 1104 CG4300-PA 1..1104 17..1120 5520 100 Plus
CG4300-RC 1374 CG4300-PC 391..1101 410..1120 3555 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4300-RD 1983 CG4300-RD 78..1181 17..1120 5520 100 Plus
CG4300-RA 1983 CG4300-RA 78..1181 17..1120 5520 100 Plus
CG4300-RC 1980 CG4300-RC 468..1178 410..1120 3555 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12272458..12273041 1120..537 2920 100 Minus
3L 28110227 3L 12276890..12277174 301..17 1425 100 Minus
3L 28110227 3L 12273498..12273623 536..411 630 100 Minus
3L 28110227 3L 12275076..12275187 413..302 560 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:59:26 has no hits.

BS15613.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:05 Download gff for BS15613.complete
Subject Subject Range Query Range Percent Splice Strand
CG4300-RA 93..1195 17..1119 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:03:04 Download gff for BS15613.complete
Subject Subject Range Query Range Percent Splice Strand
CG4300-RA 78..1180 17..1119 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:15:08 Download gff for BS15613.complete
Subject Subject Range Query Range Percent Splice Strand
CG4300-RA 93..1195 17..1119 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:25 Download gff for BS15613.complete
Subject Subject Range Query Range Percent Splice Strand
CG4300-RA 78..1180 17..1119 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:25 Download gff for BS15613.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12272459..12273041 537..1119 100 <- Minus
3L 12273498..12273620 414..536 100 <- Minus
3L 12275076..12275187 302..413 100 <- Minus
3L 12276890..12277174 17..301 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:03:04 Download gff for BS15613.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12266598..12266720 414..536 100 <- Minus
arm_3L 12268176..12268287 302..413 100 <- Minus
arm_3L 12269990..12270274 17..301 100   Minus
arm_3L 12265559..12266141 537..1119 100 <- Minus

BS15613.3prime Sequence

864 bp (759 high quality bases) assembled on 2006-12-21

> BS15613.3prime
ATGGTCTAGAAAGCTTTCAGGCTAAAGTCACTTGGTAGAAGAGCCACTCT
TCCATGAACGACGGCACAAACGCCTTGGTGGTGGTGAACTTCACCTTGGG
ACGCAGCAAATTCAACTGCTCCTCGAATAGACGCAGCTGCACCTTGCAGG
TGGACCCATTGCCATGAGTCAAATACTTTCCGTCGGGTTTCAGCACCTTG
AAGGAGTGCTCGAAGATGGTACGAATGAAATCCCAGGTCTCGCCCTCCGG
GGCATCGGTTATGGGTATGTCCGTAAGATCCCCAAAAACGTAGTCGAACT
TGCGGCCCTCGGCGATGAACTTCTTCAAGTACTCCACACAGTCGCCCACA
ATGATCTCGTACTGATCGCCCTTGCGTTTCTCCAGCACATCGCCGCAGAT
CACGTTGAGGTATTTGTTGCAGGTTTGCATCACAAGCTCATCGATCTCCA
GCATCACCACATGCTTCGGATTCTCCTTGAGTAGCTCGTACAACAAGGCG
CCATCACCGCCGCCCAGGATGCAGATCTCCTTGCCCTCGTAGTTCTCCAC
GCCGCGACACATCAGGGTCTCCGTGTAAATCAAATCGGATTCAGCAATGT
TCTGCAGCTCGTCGAGGAGCAGCATGTTGCCCAGGGTCTTGGAGTGCATG
ATTTGAATCTTCTGGAAGGGCGAGCGCGCCTCGAAGACCACCTTGTCGAT
GTCGTACTCGATGATGCGCTCATCTGAGCTAGTCATATATATGTCGATAT
ATCCGCCGCGTTTAATCGGCGGCAAGTACTTGGACCGATCGGAATCAAAT
TTCTGCCGCAAAATCAGTTCCATGGTGCGCATGGTGTCGAAGGATATGCT
CGGCTCCTTGCCAT

BS15613.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG4300-PA 1104 CG4300-RA 257..1104 864..17 4215 99.8 Minus
CG4300-PB 1101 CG4300-RB 391..1101 727..17 3530 99.8 Minus
CG4300-PB 1101 CG4300-RB 257..286 864..835 150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4300-RD 1983 CG4300-RD 334..1187 864..12 4230 99.8 Minus
CG4300-RA 1983 CG4300-RA 334..1187 864..12 4230 99.8 Minus
CG4300-RC 1980 CG4300-RC 468..1184 727..12 3545 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12272458..12273041 17..600 2905 99.8 Plus
3L 28110227 3L 12273498..12273623 601..726 630 100 Plus
3L 28110227 3L 12275076..12275187 724..835 560 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:22:38 has no hits.

BS15613.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:48 Download gff for BS15613.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4300-PA 257..1104 17..864 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:05 Download gff for BS15613.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4300-PA 257..1104 17..864 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 13:01:26 Download gff for BS15613.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4300-RA 334..1190 6..864 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:42:47 Download gff for BS15613.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4300-RA 334..1190 6..864 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:42:47 Download gff for BS15613.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12272449..12273041 6..600 99 <- Plus
3L 12273498..12273620 601..723 100 <- Plus
3L 12275076..12275187 724..835 100 <- Plus
3L 12276890..12276918 836..864 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 13:01:26 Download gff for BS15613.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12266598..12266720 601..723 100 <- Plus
arm_3L 12265549..12266141 6..600 99 <- Plus
arm_3L 12268176..12268287 724..835 100 <- Plus
arm_3L 12269990..12270018 836..864 100   Plus

BS15613.5prime Sequence

855 bp (811 high quality bases) assembled on 2006-12-21

> BS15613.5prime
GAAGTTATCCTTCGAGATGGCGGCCCAGACGATACTGTTTGATTTCACGC
TGGACAAGGACAAGACGGCGGATGAGGAGGCGCGCCTCCAGGTGGCCAAA
ATCCTGCGTAACGAGCTGGAGCAGCTGTTCCCCCAGCTGGAGCTGGCCTA
CTCGATGGAGTCGCCGGAAAACGGCTACTTTGCGGTGCTGCACGAGAACA
AGGACACGGTGATTACCTGCCGCATCTTCCAGCACGGCCTGCTGACGCTC
AACGTGGAGTACTTCCTGCCCGATGGCAAGGAGCCGAGCATATCCTTCGA
CACCATGCGCACCATGGAACTGATTTTGCGGCAGAAATTTGATTCCGATC
GGTCCAAGTACTTGCCGCCGATTAAACGCGGCGGATATATCGACATATAT
ATGACTAGCTCAGATGAGCGCATCATCGAGTACGACATCGACAAGGTGGT
CTTCGAGGCGCGCTCGCCCTTCCAGAAGATTCAAATCATGCACTCCAAGA
CCCTGGGCAACATGCTGCTCCTCGACGAGCTGCAGAACATTGCTGAATCC
GATTTGATTTACACGGAGACCCTGATGTGTCGCGGCGTGGAGAACTACGA
GGGCAAGGAGATCTGCATCCTGGGCGGCGGTGATGGCGCCTTGTTGTACG
AGCTACTCAAGGAGAATCCGAAGCATGTGGTGATGCTGGAGATCGATGAG
CTTGTGATGCAAACCTGCAACAAATACCTCAACGTGATCTGCGGCGATGT
GCTGGAGAAACGCAAGGGCGATCAGTACGAGATCATTGTGGGCGACTGTG
TGGAGTACTTGAAGAAGTTCATCGCCGAGGGCCGCAAGTTCGACTACGTT
TTTGG

BS15613.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4300-PA 1104 CG4300-RA 1..839 17..855 4195 100 Plus
CG4300-PB 1101 CG4300-RB 391..836 410..855 2230 100 Plus
CG4300-PB 1101 CG4300-RB 1..286 17..302 1430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4300-RD 1983 CG4300-RD 77..916 16..855 4200 100 Plus
CG4300-RA 1983 CG4300-RA 77..916 16..855 4200 100 Plus
CG4300-RC 1980 CG4300-RC 468..913 410..855 2230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12272723..12273041 855..537 1595 100 Minus
3L 28110227 3L 12276890..12277175 301..16 1430 100 Minus
3L 28110227 3L 12273498..12273623 536..411 630 100 Minus
3L 28110227 3L 12275076..12275187 413..302 560 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:12:19 has no hits.

BS15613.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:50 Download gff for BS15613.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4300-PA 1..839 17..855 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:07 Download gff for BS15613.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4300-PA 1..839 17..855 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 13:00:36 Download gff for BS15613.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4300-RA 77..916 16..855 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:18:14 Download gff for BS15613.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4300-RA 77..916 16..855 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:18:14 Download gff for BS15613.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12272723..12273041 537..855 100 <- Minus
3L 12273498..12273620 414..536 100 <- Minus
3L 12275076..12275187 302..413 100 <- Minus
3L 12276890..12277175 16..301 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 13:00:36 Download gff for BS15613.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12265823..12266141 537..855 100 <- Minus
arm_3L 12266598..12266720 414..536 100 <- Minus
arm_3L 12268176..12268287 302..413 100 <- Minus
arm_3L 12269990..12270275 16..301 100   Minus

BS15613.pep Sequence

Translation from 16 to 1119

> BS15613.pep
MAAQTILFDFTLDKDKTADEEARLQVAKILRNELEQLFPQLELAYSMESP
ENGYFAVLHENKDTVITCRIFQHGLLTLNVEYFLPDGKEPSISFDTMRTM
ELILRQKFDSDRSKYLPPIKRGGYIDIYMTSSDERIIEYDIDKVVFEARS
PFQKIQIMHSKTLGNMLLLDELQNIAESDLIYTETLMCRGVENYEGKEIC
ILGGGDGALLYELLKENPKHVVMLEIDELVMQTCNKYLNVICGDVLEKRK
GDQYEIIVGDCVEYLKKFIAEGRKFDYVFGDLTDIPITDAPEGETWDFIR
TIFEHSFKVLKPDGKYLTHGNGSTCKVQLRLFEEQLNLLRPKVKFTTTKA
FVPSFMEEWLFYQVTFA*

BS15613.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4300-PA 367 CG4300-PA 1..367 1..367 1915 100 Plus
CG4300-PD 458 CG4300-PD 1..367 1..367 1915 100 Plus
CG4300-PB 366 CG4300-PB 1..366 1..367 1766 92.9 Plus
CG4300-PC 457 CG4300-PC 1..366 1..367 1766 92.9 Plus
SpdS-PC 287 CG8327-PC 26..196 141..320 156 30.5 Plus