Clone Sequence Records
BS15614.complete Sequence
1283 bp assembled on 2009-12-07
GenBank Submission: KX805630
> BS15614.complete
GAAGTTATCAGTCGACATGAAGCTCGGATTTCTGGGCCTTTTTGGCATGG
TGCTCAGTTTGCGGGCCCATATATGTGCAAATACTGTTGATACGAAGAGT
CTATTACAAAAAATGACGGACGCAAGGCTTCAATTTGCCCTCAACCTGCT
GCAAATGGAATCCACGCATTTAAACCTGGAAAACTTTGCGATGACGCCAT
TTTCCACGTGGTCACTTATGATCATGTTCTACGAGGGAGCAGAGGGGACT
ACCTTGAAGCAGATACGTGATGTCCTGGCGATCTATGTCGATTATCCAAC
ACTGCGCAGGTGGTACGAGGATGTCCGAGCTTATCACTATTTAAATTCGG
AAAACACAAAACTGTTTTCGCTGCGTTACGCTTACTACGACGATGTAGGA
GATTTAGAACTCGTGAAAGGGTACAACAGTGTAGTCCTAGAAGGAGTAGG
AGAAGGAAATGTGGTTCTTCGAGAGGGTCGGCCAAGGGGTGTGGACTTCG
ACCAGGGGGCGAGTATAATTATCAACGACGATATCGACAAAGCCTCTCAT
GCGAAAATCTTCAGTTCTTATAGCCGTCGTTCGTTCAATAGTACAGTAAC
TGTGCTGGGGATTACTGTTAGCTACTTTAAGGCCAAATGGAAGTATCCAT
TCGATAAGTCCCAGACGAAAGTGGAACAGTTTTACAACGCCGGCGGCTCG
CCGGCAGGTAAGGTGGAGATGATGGTGCAAACGGGGAAGTATGCCTACGT
CAATAATGTAAAGGGTCTGCAAGCGGATGTCCTGGAGCTACCTTTTGGGG
AACATGAGCTAGTAATGATCGTCATACTGCCGAAGCCTTCCCAGAGAGTA
AGCCTGGTGCTCAAACAATTGAAGAACCTGGGACTACATCGCCTCCTTGA
GGAACTCGAGGCCTCCAAGAATGAATCTGATGTAGAAGTCAAGCTTCCCA
AGTTCGATACGCGATCCGTACTTTCACTCGAAGATACCGTATATGAGGCT
GGACTAACGGATCTGAGAAATGAGTTCGCAGATCTAGGTCGCATGCTGAT
TCCTACCGGGGACAGAGGTGCGTACCTCTCCCTCTACCACCAATTCGCCA
GGATCGTCGTAGATGAAGAGGGCTTGCCTAATGCTGTTCCGCAGAAATCT
TCTGGAACAAATAACATCAAGTTCCATATAAACAGGCCGTTTGCATACCT
TGTCCTACAAAGAACACACAAATTGCTCATTCACTCCGGAGTCTTTCGGG
AAGGTGAGATCCAGTAAAAGCTTTCTAGACCAT
BS15614.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:27:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn77Bc-RB | 1251 | CG6289-PB | 1..1251 | 17..1267 | 6255 | 100 | Plus |
Spn77Bc-RA | 1251 | CG6289-PA | 1..1251 | 17..1267 | 6255 | 100 | Plus |
Spn77Bb-RA | 1089 | CG6663-PA | 40..1089 | 218..1267 | 4560 | 95.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:27:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn77Bc-RB | 1430 | CG6289-RB | 40..1290 | 17..1267 | 6255 | 100 | Plus |
Spn77Bc-RA | 1440 | CG6289-RA | 50..1300 | 17..1267 | 6255 | 100 | Plus |
Spn77Bb-RA | 1161 | CG6663-RA | 74..1123 | 218..1267 | 4560 | 95.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:27:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20343497..20343853 | 642..998 | 1785 | 100 | Plus |
3L | 28110227 | 3L | 20342738..20343060 | 17..339 | 1615 | 100 | Plus |
3L | 28110227 | 3L | 20321638..20321992 | 642..996 | 1610 | 96.9 | Plus |
3L | 28110227 | 3L | 20343128..20343431 | 340..643 | 1520 | 100 | Plus |
3L | 28110227 | 3L | 20321269..20321572 | 340..643 | 1490 | 99.3 | Plus |
3L | 28110227 | 3L | 20343908..20344179 | 996..1267 | 1360 | 100 | Plus |
3L | 28110227 | 3L | 20322049..20322320 | 996..1267 | 1045 | 92.3 | Plus |
3L | 28110227 | 3L | 20321080..20321201 | 218..339 | 445 | 91 | Plus |
3L | 28110227 | 3L | 20321041..20321080 | 17..56 | 185 | 97.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:27:48 has no hits.
BS15614.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:17 Download gff for
BS15614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6289-RA | 33..1281 | 17..1265 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:45 Download gff for
BS15614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn77Bc-RA | 50..1298 | 17..1265 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:07 Download gff for
BS15614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6289-RA | 33..1281 | 17..1265 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:57 Download gff for
BS15614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn77Bc-RA | 50..1298 | 17..1265 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:57 Download gff for
BS15614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20342738..20343060 | 17..339 | 100 | -> | Plus |
3L | 20343128..20343431 | 340..643 | 100 | -> | Plus |
3L | 20343499..20343852 | 644..997 | 100 | -> | Plus |
3L | 20343910..20344177 | 998..1265 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:45 Download gff for
BS15614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20335838..20336160 | 17..339 | 100 | -> | Plus |
arm_3L | 20336228..20336531 | 340..643 | 100 | -> | Plus |
arm_3L | 20336599..20336952 | 644..997 | 100 | -> | Plus |
arm_3L | 20337010..20337277 | 998..1265 | 100 | | Plus |
BS15614.3prime Sequence
758 bp (712 high quality bases) assembled on 2006-12-21
> BS15614.3prime
ATGGTCTAGAAAGCTTTTACTCTTTCTCACCTTCCCGAAAGACTCCGGAG
TGAATGAGCAATTTGTGTGTTCTTTGTAGGACAAGGTATGCAAACTCTCT
GTTTATATGGAACTTGATGTTATTTGTTCCAGAAGATTTCTGCGGAACAG
CATTAGGCAAGCCCTCTTCATCTACGACGATCCTGGCGAATTGGTGGTAG
AGGGAGAGGTACGCACCTCTGTCCCCGGTAGGAATCAGCATGCGACCTAG
ATCTGCGAACTCATTTCTCAGATCCGTTAGTCCAGCCTCATATACGGTAT
CTTCGAGTGAAAGTACGGATCGCGTATCGAACTTGGGAAGCTTGACTTCT
ACATCAGATTCATTCTTGGAGGCCTCGAGTTCCTCAAGGAGGCGATGTAG
TCCCAGGTTCTTCAATTGTTTGAGCACCAGGCTTACTCTCTGGGAAGGCT
TCGGCAGTATGACGATCATTACTAGCTCATGTTCCCCAAAAGGTAGCTCC
AGGACATCCGCTTGCAGACCCTTTACATTATTGACGTAGGCATACTTCCC
CGTTTGCACCATCATCTCCACCTTACCTGCCGGCGAGCCGCCGGCGTTGT
AAAACTGTTCCACTTTCGTCTGGGACTTATCGAATGGATACTTCCATTTG
GCCTTAAAGTAGCTAACAGTAATCCCCAGCACAGTTACTGTACTATTGAA
CGAACGACGGCTATAAGAACTGAAGATTTTCGCATGAGAGGCTTTGTCGA
TATCGTCG
BS15614.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6289-PA | 1251 | CG6289-RA | 510..1169 | 758..99 | 3300 | 100 | Minus |
CG6663-PA | 1089 | CG6663-RA | 348..859 | 758..247 | 2185 | 97 | Minus |
CG6663-PA | 1089 | CG6663-RA | 884..1007 | 222..99 | 470 | 95.1 | Minus |
CG6289-PA | 1251 | CG6289-RA | 1173..1243 | 95..25 | 355 | 100 | Minus |
CG6663-PA | 1089 | CG6663-RA | 1038..1081 | 68..25 | 220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 21:25:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn77Bc-RB | 1430 | CG6289-RB | 549..1282 | 758..25 | 3625 | 99.6 | Minus |
Spn77Bc-RA | 1440 | CG6289-RA | 559..1292 | 758..25 | 3625 | 99.6 | Minus |
Spn77Bb-RA | 1161 | CG6663-RA | 382..1115 | 758..25 | 3130 | 95.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 21:25:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20343497..20343853 | 642..286 | 1785 | 100 | Minus |
3L | 28110227 | 3L | 20321638..20321992 | 642..288 | 1610 | 96.9 | Minus |
3L | 28110227 | 3L | 20343908..20344171 | 288..25 | 1275 | 98.9 | Minus |
3L | 28110227 | 3L | 20322049..20322312 | 288..25 | 960 | 90.9 | Minus |
3L | 28110227 | 3L | 20321455..20321572 | 758..641 | 590 | 100 | Minus |
3L | 28110227 | 3L | 20343314..20343431 | 758..641 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-05 21:25:12 has no hits.
BS15614.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:51 Download gff for
BS15614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6289-PA | 510..1251 | 17..758 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:08 Download gff for
BS15614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6289-PA | 510..1251 | 17..758 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 03:20:03 Download gff for
BS15614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn77Bc-RA | 559..1300 | 17..758 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:21:55 Download gff for
BS15614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn77Bc-RA | 559..1300 | 17..758 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 00:21:55 Download gff for
BS15614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20343314..20343431 | 641..758 | 100 | -> | Minus |
3L | 20343499..20343852 | 287..640 | 100 | -> | Minus |
3L | 20343910..20344179 | 17..286 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 03:20:03 Download gff for
BS15614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20336414..20336531 | 641..758 | 100 | -> | Minus |
arm_3L | 20336599..20336952 | 287..640 | 100 | -> | Minus |
arm_3L | 20337010..20337279 | 17..286 | 97 | | Minus |
BS15614.5prime Sequence
848 bp (793 high quality bases) assembled on 2006-12-21
> BS15614.5prime
GAAGTTATCCTTCGACATGAAGCTCGGATTTCTGGGCCTTTTTGGCATGG
TGCTCAGTTTGCGGGCCCATATATGTGCAAATACTGTTGATACGAAGAGT
CTATTACAAAAAATGACGGACGCAAGGCTTCAATTTGCCCTCAACCTGCT
GCAAATGGAATCCACGCATTTAAACCTGGAAAACTTTGCGATGACGCCAT
TTTCCACGTGGTCACTTATGATCATGTTCTACGAGGGAGCAGAGGGGACT
ACCTTGAAGCAGATACGTGATGTCCTGGCGATCTATGTCGATTATCCAAC
ACTGCGCAGGTGGTACGAGGATGTCCGAGCTTATCACTATTTAAATTCGG
AAAACACAAAACTGTTTTCGCTGCGTTACGCTTACTACGACGATGTAGGA
GATTTAGAACTCGTGAAAGGGTACAACAGTGTAGTCCTAGAAGGAGTAGG
AGAAGGAAATGTGGTTCTTCGAGAGGGTCGGCCAAGGGGTGTGGACTTCG
ACCAGGGGGCGAGTATAATTATCAACGACGATATCGACAAAGCCTCTCAT
GCGAAAATCTTCAGTTCTTATAGCCGTCGTTCGTTCAATAGTACAGTAAC
TGTGCTGGGGATTACTGTTAGCTACTTTAAGGCCAAATGGAAGTATCCAT
TCGATAAGTCCCAGACGAAAGTGGAACAGTTTTACAACGCCGGCGGCTCG
CCGGCAGGTAAGGTGGAGATGATGGTGCAAACGGGGAAGTATGCCTACGT
CAATAATGTAAAGGGTCTGCAAGCGGATGTCCTGGAGCTACCTTTTGGGG
AACATGAGCTAGTAATGATCGTCATACTGCCGAAAGCCTTCCAGAGAG
BS15614.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6289-PA | 1251 | CG6289-RA | 1..818 | 17..834 | 4090 | 100 | Plus |
CG6663-PA | 1089 | CG6663-RA | 91..656 | 269..834 | 2705 | 99.1 | Plus |
CG6663-PA | 1089 | CG6663-RA | 1..40 | 17..56 | 175 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 02:30:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn77Bc-RB | 1430 | CG6289-RB | 40..871 | 17..848 | 4115 | 99.8 | Plus |
Spn77Bc-RA | 1440 | CG6289-RA | 50..881 | 17..848 | 4115 | 99.8 | Plus |
Spn77Bb-RA | 1161 | CG6663-RA | 74..690 | 218..834 | 2860 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 02:30:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20342738..20343060 | 17..339 | 1615 | 100 | Plus |
3L | 28110227 | 3L | 20343128..20343431 | 340..643 | 1520 | 100 | Plus |
3L | 28110227 | 3L | 20321269..20321572 | 340..643 | 1490 | 99.3 | Plus |
3L | 28110227 | 3L | 20343497..20343703 | 642..848 | 975 | 98.1 | Plus |
3L | 28110227 | 3L | 20321638..20321830 | 642..834 | 935 | 99 | Plus |
3L | 28110227 | 3L | 20321080..20321201 | 218..339 | 445 | 91 | Plus |
3L | 28110227 | 3L | 20321041..20321080 | 17..56 | 185 | 97.5 | Plus |
Blast to na_te.dros performed on 2015-01-30 02:30:31 has no hits.
BS15614.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:52 Download gff for
BS15614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6289-PA | 1..832 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:10 Download gff for
BS15614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6289-PA | 1..832 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:28:12 Download gff for
BS15614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn77Bc-RA | 50..881 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:02:29 Download gff for
BS15614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn77Bc-RA | 50..881 | 17..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:02:29 Download gff for
BS15614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20342738..20343060 | 17..339 | 100 | -> | Plus |
3L | 20343128..20343431 | 340..643 | 100 | -> | Plus |
3L | 20343499..20343703 | 644..848 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:28:12 Download gff for
BS15614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20335838..20336160 | 17..339 | 100 | -> | Plus |
arm_3L | 20336228..20336531 | 340..643 | 100 | -> | Plus |
arm_3L | 20336599..20336803 | 644..848 | 99 | | Plus |
BS15614.pep Sequence
Translation from 16 to 1266
> BS15614.pep
MKLGFLGLFGMVLSLRAHICANTVDTKSLLQKMTDARLQFALNLLQMEST
HLNLENFAMTPFSTWSLMIMFYEGAEGTTLKQIRDVLAIYVDYPTLRRWY
EDVRAYHYLNSENTKLFSLRYAYYDDVGDLELVKGYNSVVLEGVGEGNVV
LREGRPRGVDFDQGASIIINDDIDKASHAKIFSSYSRRSFNSTVTVLGIT
VSYFKAKWKYPFDKSQTKVEQFYNAGGSPAGKVEMMVQTGKYAYVNNVKG
LQADVLELPFGEHELVMIVILPKPSQRVSLVLKQLKNLGLHRLLEELEAS
KNESDVEVKLPKFDTRSVLSLEDTVYEAGLTDLRNEFADLGRMLIPTGDR
GAYLSLYHQFARIVVDEEGLPNAVPQKSSGTNNIKFHINRPFAYLVLQRT
HKLLIHSGVFREGEIQ*
BS15614.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:03:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn77Bc-PB | 416 | CG6289-PB | 1..416 | 1..416 | 2132 | 100 | Plus |
Spn77Bc-PA | 416 | CG6289-PA | 1..416 | 1..416 | 2132 | 100 | Plus |
Spn77Bb-PA | 362 | CG6663-PA | 13..362 | 67..416 | 1664 | 92 | Plus |
Spn77Ba-PC | 450 | CG6680-PC | 79..445 | 40..411 | 472 | 33.3 | Plus |
Spn77Ba-PB | 450 | CG6680-PB | 79..445 | 40..411 | 472 | 33.3 | Plus |