Clone BS15615 Report

Search the DGRC for BS15615

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:156
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG1275-RC
Protein status:BS15615.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15615.5prime Sequence

776 bp (733 high quality bases) assembled on 2006-12-21

> BS15615.5prime
GAAGTTATCCTTCGACATGTTGTTCTCACTGGGCAGCGGCAAGGCCAACA
TGGATCCAGCGCTGATCAACTTTAAGGTGCTCTATGTGCTCACCCAGCTG
TGCGGCCTGACCATGATCGTCCTGGTGGCCACCTGGATTGGCCAGCACTT
CGGCGGTCTGGCCGGCACCTCAAATCCCGGCGTGGAGTTCAACTGGCATC
CGCTGTTCATGACCATTGGCTTCATTTACCTGTATGGCAACTCCATTCTG
ATCTATCGTGGTTTCCGCACCACGCGCAAGAAGACTCTGAAGCTTACCCA
CGCCGGCATCCACATGGGTGCATTCATTCTGACGGTGATTGCCCTGAAGA
CGGTCTTCGATTCCCACAACTTGGCCAATCCGCCCATTCCCAACATGTAC
TCCCTGCACTCTTGGCTGGGGCTCTCCGCGGTGATCGTCTTCTCGCTGCA
GTATGTGGCCGGATTTGTGGCCTTTTTGGCGCCGGGGTTGAGGGAGAACT
ACAGGATCGCCATGATGCCGCTGCACATCTACTTCGGACTCTTTGGATTC
GTTCTGGCTATTGCTAGTGCCCTGATGGGCATAACCGAGAAGGCCATCTT
CGCCATCAAAACTCCGGCTTACTCCACTCTTCCACCGGCTGGTGTGTTGG
CCAATGTGATTGGAGTAATGTACGTGGTCTTCGGGGCGCTGGTTGTCTAC
CTAGCCACTGAGCCCTCCTACAAGCGGAAGCCCATTCCCGAGGACACGGC
TCTGCTGAACTCCAGTTCTGTCAACG

BS15615.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG1275-PC 765 CG1275-RC 1..760 17..776 3800 100 Plus
CG1275-PB 1023 CG1275-RB 274..1018 32..776 3725 100 Plus
CG1275-PA 1023 CG1275-RA 274..1018 32..776 3725 100 Plus
CG1275-PD 732 CG1275-RD 1..727 50..776 3635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG1275-RC 1300 CG1275-RC 191..951 16..776 3805 100 Plus
CG1275-RA 1574 CG1275-RA 472..1216 32..776 3725 100 Plus
CG1275-RB 1698 CG1275-RB 596..1340 32..776 3725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2253329..2253692 606..243 1820 100 Minus
3L 28110227 3L 2253777..2253987 242..32 1055 100 Minus
3L 28110227 3L 2253102..2253271 776..607 850 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:20:08 has no hits.

BS15615.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:54 Download gff for BS15615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1275-PC 1..760 17..776 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:12 Download gff for BS15615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1275-PC 1..760 17..776 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 13:01:01 Download gff for BS15615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1275-RC 188..951 13..776 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:46:08 Download gff for BS15615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1275-RC 188..951 13..776 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:46:08 Download gff for BS15615.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2253102..2253271 607..776 100 <- Minus
3L 2253329..2253692 243..606 100 <- Minus
3L 2253777..2253986 33..242 100 <- Minus
3L 2256606..2256625 13..32 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 13:01:01 Download gff for BS15615.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2253102..2253271 607..776 100 <- Minus
arm_3L 2253329..2253692 243..606 100 <- Minus
arm_3L 2253777..2253986 33..242 100 <- Minus
arm_3L 2256606..2256625 13..32 95   Minus

BS15615.3prime Sequence

795 bp (673 high quality bases) assembled on 2006-12-21

> BS15615.3prime
ATGGTCTAGAAAGCTTTTACCCGTTGAGAGAACTGGAGTTCAGCAGAGCC
GTGTCCTCGGGAATGGGCTTCCGCTTGTAGGAGGGCTCAGTGGCTTGGTA
GACAACCAGCGCCCCGAAGACCACGTACATTACTCCAATCACATTGGCCA
ACACACCAGCCGGTGGAAGAGTGGAGTAAGCCGGAGTTTTGATGGCGAAG
ATGGCCTTCTCGGTTATGCCCATCAGGGCACTAGCAATAGCCAGAACGAA
TCCAAAGAGTCCGAAGTAGATGTGCAGCGGCATCATGGCGATCCTGTAGT
TCTCCCTCAACCCCGGCGCCAAAAAGGCCACAAATCCGGCCACATACTGC
AGCGAGAAGACGATCACCGCGGAGAGCCCCAGCCAAGAGTGCAGGGAGTA
CATGTTGGGAATGGGCGGATTGGCCAAGTTGTGGGAATCGAAGACCGTCT
TCAGGGCAATCACCGTCAGAATGAATGCACCCATGTGGATGCCGGCGTGG
GTAAGCTTCAGAGTCTTCTTGCGCGTGGTGCGGAAACCACGATAGATCAG
AATGGAGTTGCCATACAGGTAAATGAAGCCAATGGTCATGAACAGCGGAT
GCCAGTTGAACTCCACGCCGGGATTTGAGGTGCCGGCCAGACCGCCGAAG
TGCTGGCCAATCCAGGTGGCCACCAGGACGATCATGGTCAGGCCGCACAG
CTGGGTGAGCACATAGAGCACCTTAAAGTTGATCAGCGCTGGATCCATGT
TGGCCTTGCCGCTGCCCAGTGAGAACAACATGTCGACTGATAACT

BS15615.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG1275-PC 765 CG1275-RC 1..760 781..22 3750 99.7 Minus
CG1275-PB 1023 CG1275-RB 274..1018 766..22 3675 99.7 Minus
CG1275-PA 1023 CG1275-RA 274..1018 766..22 3675 99.7 Minus
CG1275-PD 732 CG1275-RD 1..727 748..22 3585 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 21:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1275-RC 1300 CG1275-RC 191..956 782..17 3785 99.6 Minus
CG1275-RA 1574 CG1275-RA 472..1221 766..17 3705 99.6 Minus
CG1275-RB 1698 CG1275-RB 596..1345 766..17 3705 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 21:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2253329..2253692 192..555 1820 100 Plus
3L 28110227 3L 2253777..2253987 556..766 1055 100 Plus
3L 28110227 3L 2253097..2253271 17..191 830 98.3 Plus
Blast to na_te.dros performed on 2015-02-05 21:26:56 has no hits.

BS15615.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:53 Download gff for BS15615.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1275-PC 1..765 17..781 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:11 Download gff for BS15615.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1275-PC 1..765 17..781 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 03:20:21 Download gff for BS15615.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1275-RC 184..961 12..792 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:22:10 Download gff for BS15615.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1275-RC 184..961 12..792 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 00:22:10 Download gff for BS15615.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 2253092..2253271 12..191 97 <- Plus
3L 2253329..2253692 192..555 100 <- Plus
3L 2253777..2253986 556..765 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 03:20:21 Download gff for BS15615.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2253092..2253271 12..191 97 <- Plus
arm_3L 2253329..2253692 192..555 100 <- Plus
arm_3L 2253777..2253986 556..765 100 <- Plus

BS15615.complete Sequence

797 bp assembled on 2006-11-29

GenBank Submission: FJ638868

> BS15615.complete
GAAGTTATCAGTCGACATGTTGTTCTCACTGGGCAGCGGCAAGGCCAACA
TGGATCCAGCGCTGATCAACTTTAAGGTGCTCTATGTGCTCACCCAGCTG
TGCGGCCTGACCATGATCGTCCTGGTGGCCACCTGGATTGGCCAGCACTT
CGGCGGTCTGGCCGGCACCTCAAATCCCGGCGTGGAGTTCAACTGGCATC
CGCTGTTCATGACCATTGGCTTCATTTACCTGTATGGCAACTCCATTCTG
ATCTATCGTGGTTTCCGCACCACGCGCAAGAAGACTCTGAAGCTTACCCA
CGCCGGCATCCACATGGGTGCATTCATTCTGACGGTGATTGCCCTGAAGA
CGGTCTTCGATTCCCACAACTTGGCCAATCCGCCCATTCCCAACATGTAC
TCCCTGCACTCTTGGCTGGGGCTCTCCGCGGTGATCGTCTTCTCGCTGCA
GTATGTGGCCGGATTTGTGGCCTTTTTGGCGCCGGGGTTGAGGGAGAACT
ACAGGATCGCCATGATGCCGCTGCACATCTACTTCGGACTCTTTGGATTC
GTTCTGGCTATTGCTAGTGCCCTGATGGGCATAACCGAGAAGGCCATCTT
CGCCATCAAAACTCCGGCTTACTCCACTCTTCCACCGGCTGGTGTGTTGG
CCAATGTGATTGGAGTAATGTACGTGGTCTTCGGGGCGCTGGTTGTCTAC
CTAGCCACTGAGCCCTCCTACAAGCGGAAGCCCATTCCCGAGGACACGGC
TCTGCTGAACTCCAGTTCTGTCAACGAGTAAAAGCTTTCTAGACCAT

BS15615.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:24:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1275-RC 765 CG1275-PC 1..765 17..781 3825 100 Plus
CG1275-RA 1023 CG1275-PA 274..1023 32..781 3750 100 Plus
CG1275-RB 1023 CG1275-PB 274..1023 32..781 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1275-RC 1300 CG1275-RC 191..956 16..781 3830 100 Plus
CG1275-RA 1574 CG1275-RA 472..1221 32..781 3750 100 Plus
CG1275-RB 1698 CG1275-RB 596..1345 32..781 3750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2253329..2253692 606..243 1820 100 Minus
3L 28110227 3L 2253777..2253987 242..32 1055 100 Minus
3L 28110227 3L 2253097..2253271 781..607 875 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:24:20 has no hits.

BS15615.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:23:53 Download gff for BS15615.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RC 1..765 17..781 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:20 Download gff for BS15615.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RC 130..907 6..786 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:56:56 Download gff for BS15615.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RC 197..954 22..779 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:23:54 Download gff for BS15615.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RC 130..907 6..786 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:59:59 Download gff for BS15615.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RC 197..954 22..779 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:59:59 Download gff for BS15615.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2253099..2253271 607..779 100 <- Minus
3L 2253329..2253692 243..606 100 <- Minus
3L 2253777..2253992 23..242 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:56:56 Download gff for BS15615.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2253099..2253271 607..779 100 <- Minus
arm_3L 2253329..2253692 243..606 100 <- Minus
arm_3L 2253777..2253992 23..242 98   Minus

BS15615.pep Sequence

Translation from 16 to 780

> BS15615.pep
MLFSLGSGKANMDPALINFKVLYVLTQLCGLTMIVLVATWIGQHFGGLAG
TSNPGVEFNWHPLFMTIGFIYLYGNSILIYRGFRTTRKKTLKLTHAGIHM
GAFILTVIALKTVFDSHNLANPPIPNMYSLHSWLGLSAVIVFSLQYVAGF
VAFLAPGLRENYRIAMMPLHIYFGLFGFVLAIASALMGITEKAIFAIKTP
AYSTLPPAGVLANVIGVMYVVFGALVVYLATEPSYKRKPIPEDTALLNSS
SVNE*

BS15615.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG1275-PC 254 CG1275-PC 1..254 1..254 1307 100 Plus
CG1275-PA 340 CG1275-PA 92..340 6..254 1284 100 Plus
CG1275-PB 340 CG1275-PB 92..340 6..254 1284 100 Plus
CG1275-PD 243 CG1275-PD 1..243 12..254 1253 100 Plus
nemy-PL 256 CG8776-PL 25..237 19..228 281 33.6 Plus