Clone Sequence Records
BS15615.5prime Sequence
776 bp (733 high quality bases) assembled on 2006-12-21
> BS15615.5prime
GAAGTTATCCTTCGACATGTTGTTCTCACTGGGCAGCGGCAAGGCCAACA
TGGATCCAGCGCTGATCAACTTTAAGGTGCTCTATGTGCTCACCCAGCTG
TGCGGCCTGACCATGATCGTCCTGGTGGCCACCTGGATTGGCCAGCACTT
CGGCGGTCTGGCCGGCACCTCAAATCCCGGCGTGGAGTTCAACTGGCATC
CGCTGTTCATGACCATTGGCTTCATTTACCTGTATGGCAACTCCATTCTG
ATCTATCGTGGTTTCCGCACCACGCGCAAGAAGACTCTGAAGCTTACCCA
CGCCGGCATCCACATGGGTGCATTCATTCTGACGGTGATTGCCCTGAAGA
CGGTCTTCGATTCCCACAACTTGGCCAATCCGCCCATTCCCAACATGTAC
TCCCTGCACTCTTGGCTGGGGCTCTCCGCGGTGATCGTCTTCTCGCTGCA
GTATGTGGCCGGATTTGTGGCCTTTTTGGCGCCGGGGTTGAGGGAGAACT
ACAGGATCGCCATGATGCCGCTGCACATCTACTTCGGACTCTTTGGATTC
GTTCTGGCTATTGCTAGTGCCCTGATGGGCATAACCGAGAAGGCCATCTT
CGCCATCAAAACTCCGGCTTACTCCACTCTTCCACCGGCTGGTGTGTTGG
CCAATGTGATTGGAGTAATGTACGTGGTCTTCGGGGCGCTGGTTGTCTAC
CTAGCCACTGAGCCCTCCTACAAGCGGAAGCCCATTCCCGAGGACACGGC
TCTGCTGAACTCCAGTTCTGTCAACG
BS15615.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1275-PC | 765 | CG1275-RC | 1..760 | 17..776 | 3800 | 100 | Plus |
CG1275-PB | 1023 | CG1275-RB | 274..1018 | 32..776 | 3725 | 100 | Plus |
CG1275-PA | 1023 | CG1275-RA | 274..1018 | 32..776 | 3725 | 100 | Plus |
CG1275-PD | 732 | CG1275-RD | 1..727 | 50..776 | 3635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1275-RC | 1300 | CG1275-RC | 191..951 | 16..776 | 3805 | 100 | Plus |
CG1275-RA | 1574 | CG1275-RA | 472..1216 | 32..776 | 3725 | 100 | Plus |
CG1275-RB | 1698 | CG1275-RB | 596..1340 | 32..776 | 3725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2253329..2253692 | 606..243 | 1820 | 100 | Minus |
3L | 28110227 | 3L | 2253777..2253987 | 242..32 | 1055 | 100 | Minus |
3L | 28110227 | 3L | 2253102..2253271 | 776..607 | 850 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:20:08 has no hits.
BS15615.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:54 Download gff for
BS15615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-PC | 1..760 | 17..776 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:12 Download gff for
BS15615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-PC | 1..760 | 17..776 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 13:01:01 Download gff for
BS15615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RC | 188..951 | 13..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:46:08 Download gff for
BS15615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RC | 188..951 | 13..776 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:46:08 Download gff for
BS15615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2253102..2253271 | 607..776 | 100 | <- | Minus |
3L | 2253329..2253692 | 243..606 | 100 | <- | Minus |
3L | 2253777..2253986 | 33..242 | 100 | <- | Minus |
3L | 2256606..2256625 | 13..32 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 13:01:01 Download gff for
BS15615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2253102..2253271 | 607..776 | 100 | <- | Minus |
arm_3L | 2253329..2253692 | 243..606 | 100 | <- | Minus |
arm_3L | 2253777..2253986 | 33..242 | 100 | <- | Minus |
arm_3L | 2256606..2256625 | 13..32 | 95 | | Minus |
BS15615.3prime Sequence
795 bp (673 high quality bases) assembled on 2006-12-21
> BS15615.3prime
ATGGTCTAGAAAGCTTTTACCCGTTGAGAGAACTGGAGTTCAGCAGAGCC
GTGTCCTCGGGAATGGGCTTCCGCTTGTAGGAGGGCTCAGTGGCTTGGTA
GACAACCAGCGCCCCGAAGACCACGTACATTACTCCAATCACATTGGCCA
ACACACCAGCCGGTGGAAGAGTGGAGTAAGCCGGAGTTTTGATGGCGAAG
ATGGCCTTCTCGGTTATGCCCATCAGGGCACTAGCAATAGCCAGAACGAA
TCCAAAGAGTCCGAAGTAGATGTGCAGCGGCATCATGGCGATCCTGTAGT
TCTCCCTCAACCCCGGCGCCAAAAAGGCCACAAATCCGGCCACATACTGC
AGCGAGAAGACGATCACCGCGGAGAGCCCCAGCCAAGAGTGCAGGGAGTA
CATGTTGGGAATGGGCGGATTGGCCAAGTTGTGGGAATCGAAGACCGTCT
TCAGGGCAATCACCGTCAGAATGAATGCACCCATGTGGATGCCGGCGTGG
GTAAGCTTCAGAGTCTTCTTGCGCGTGGTGCGGAAACCACGATAGATCAG
AATGGAGTTGCCATACAGGTAAATGAAGCCAATGGTCATGAACAGCGGAT
GCCAGTTGAACTCCACGCCGGGATTTGAGGTGCCGGCCAGACCGCCGAAG
TGCTGGCCAATCCAGGTGGCCACCAGGACGATCATGGTCAGGCCGCACAG
CTGGGTGAGCACATAGAGCACCTTAAAGTTGATCAGCGCTGGATCCATGT
TGGCCTTGCCGCTGCCCAGTGAGAACAACATGTCGACTGATAACT
BS15615.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1275-PC | 765 | CG1275-RC | 1..760 | 781..22 | 3750 | 99.7 | Minus |
CG1275-PB | 1023 | CG1275-RB | 274..1018 | 766..22 | 3675 | 99.7 | Minus |
CG1275-PA | 1023 | CG1275-RA | 274..1018 | 766..22 | 3675 | 99.7 | Minus |
CG1275-PD | 732 | CG1275-RD | 1..727 | 748..22 | 3585 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 21:26:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1275-RC | 1300 | CG1275-RC | 191..956 | 782..17 | 3785 | 99.6 | Minus |
CG1275-RA | 1574 | CG1275-RA | 472..1221 | 766..17 | 3705 | 99.6 | Minus |
CG1275-RB | 1698 | CG1275-RB | 596..1345 | 766..17 | 3705 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 21:26:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2253329..2253692 | 192..555 | 1820 | 100 | Plus |
3L | 28110227 | 3L | 2253777..2253987 | 556..766 | 1055 | 100 | Plus |
3L | 28110227 | 3L | 2253097..2253271 | 17..191 | 830 | 98.3 | Plus |
Blast to na_te.dros performed on 2015-02-05 21:26:56 has no hits.
BS15615.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:53 Download gff for
BS15615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-PC | 1..765 | 17..781 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:11 Download gff for
BS15615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-PC | 1..765 | 17..781 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 03:20:21 Download gff for
BS15615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RC | 184..961 | 12..792 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:22:10 Download gff for
BS15615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RC | 184..961 | 12..792 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 00:22:10 Download gff for
BS15615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2253092..2253271 | 12..191 | 97 | <- | Plus |
3L | 2253329..2253692 | 192..555 | 100 | <- | Plus |
3L | 2253777..2253986 | 556..765 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 03:20:21 Download gff for
BS15615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2253092..2253271 | 12..191 | 97 | <- | Plus |
arm_3L | 2253329..2253692 | 192..555 | 100 | <- | Plus |
arm_3L | 2253777..2253986 | 556..765 | 100 | <- | Plus |
BS15615.complete Sequence
797 bp assembled on 2006-11-29
GenBank Submission: FJ638868
> BS15615.complete
GAAGTTATCAGTCGACATGTTGTTCTCACTGGGCAGCGGCAAGGCCAACA
TGGATCCAGCGCTGATCAACTTTAAGGTGCTCTATGTGCTCACCCAGCTG
TGCGGCCTGACCATGATCGTCCTGGTGGCCACCTGGATTGGCCAGCACTT
CGGCGGTCTGGCCGGCACCTCAAATCCCGGCGTGGAGTTCAACTGGCATC
CGCTGTTCATGACCATTGGCTTCATTTACCTGTATGGCAACTCCATTCTG
ATCTATCGTGGTTTCCGCACCACGCGCAAGAAGACTCTGAAGCTTACCCA
CGCCGGCATCCACATGGGTGCATTCATTCTGACGGTGATTGCCCTGAAGA
CGGTCTTCGATTCCCACAACTTGGCCAATCCGCCCATTCCCAACATGTAC
TCCCTGCACTCTTGGCTGGGGCTCTCCGCGGTGATCGTCTTCTCGCTGCA
GTATGTGGCCGGATTTGTGGCCTTTTTGGCGCCGGGGTTGAGGGAGAACT
ACAGGATCGCCATGATGCCGCTGCACATCTACTTCGGACTCTTTGGATTC
GTTCTGGCTATTGCTAGTGCCCTGATGGGCATAACCGAGAAGGCCATCTT
CGCCATCAAAACTCCGGCTTACTCCACTCTTCCACCGGCTGGTGTGTTGG
CCAATGTGATTGGAGTAATGTACGTGGTCTTCGGGGCGCTGGTTGTCTAC
CTAGCCACTGAGCCCTCCTACAAGCGGAAGCCCATTCCCGAGGACACGGC
TCTGCTGAACTCCAGTTCTGTCAACGAGTAAAAGCTTTCTAGACCAT
BS15615.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:24:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1275-RC | 765 | CG1275-PC | 1..765 | 17..781 | 3825 | 100 | Plus |
CG1275-RA | 1023 | CG1275-PA | 274..1023 | 32..781 | 3750 | 100 | Plus |
CG1275-RB | 1023 | CG1275-PB | 274..1023 | 32..781 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:24:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1275-RC | 1300 | CG1275-RC | 191..956 | 16..781 | 3830 | 100 | Plus |
CG1275-RA | 1574 | CG1275-RA | 472..1221 | 32..781 | 3750 | 100 | Plus |
CG1275-RB | 1698 | CG1275-RB | 596..1345 | 32..781 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:24:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2253329..2253692 | 606..243 | 1820 | 100 | Minus |
3L | 28110227 | 3L | 2253777..2253987 | 242..32 | 1055 | 100 | Minus |
3L | 28110227 | 3L | 2253097..2253271 | 781..607 | 875 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:24:20 has no hits.
BS15615.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:23:53 Download gff for
BS15615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RC | 1..765 | 17..781 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:20 Download gff for
BS15615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RC | 130..907 | 6..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:56:56 Download gff for
BS15615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RC | 197..954 | 22..779 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:23:54 Download gff for
BS15615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RC | 130..907 | 6..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:59:59 Download gff for
BS15615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RC | 197..954 | 22..779 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:59:59 Download gff for
BS15615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2253099..2253271 | 607..779 | 100 | <- | Minus |
3L | 2253329..2253692 | 243..606 | 100 | <- | Minus |
3L | 2253777..2253992 | 23..242 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:56:56 Download gff for
BS15615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2253099..2253271 | 607..779 | 100 | <- | Minus |
arm_3L | 2253329..2253692 | 243..606 | 100 | <- | Minus |
arm_3L | 2253777..2253992 | 23..242 | 98 | | Minus |
BS15615.pep Sequence
Translation from 16 to 780
> BS15615.pep
MLFSLGSGKANMDPALINFKVLYVLTQLCGLTMIVLVATWIGQHFGGLAG
TSNPGVEFNWHPLFMTIGFIYLYGNSILIYRGFRTTRKKTLKLTHAGIHM
GAFILTVIALKTVFDSHNLANPPIPNMYSLHSWLGLSAVIVFSLQYVAGF
VAFLAPGLRENYRIAMMPLHIYFGLFGFVLAIASALMGITEKAIFAIKTP
AYSTLPPAGVLANVIGVMYVVFGALVVYLATEPSYKRKPIPEDTALLNSS
SVNE*
BS15615.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1275-PC | 254 | CG1275-PC | 1..254 | 1..254 | 1307 | 100 | Plus |
CG1275-PA | 340 | CG1275-PA | 92..340 | 6..254 | 1284 | 100 | Plus |
CG1275-PB | 340 | CG1275-PB | 92..340 | 6..254 | 1284 | 100 | Plus |
CG1275-PD | 243 | CG1275-PD | 1..243 | 12..254 | 1253 | 100 | Plus |
nemy-PL | 256 | CG8776-PL | 25..237 | 19..228 | 281 | 33.6 | Plus |