Clone Sequence Records
BS15616.complete Sequence
539 bp assembled on 2010-02-09
GenBank Submission: KX803032
> BS15616.complete
GAAGTTATCAGTCGACATGTTCAAAAACCACTTGGAAATGATTGGGCGCA
ATGAGAGCCCCAGCAAGAAGGCGAAATTCTGGCAGTCCTACATCAGGTCC
CTGAAGGGCTCCGAGGATATCCGTGCCCACGAGGCGCCCCGTGCCTCTCG
TCCCTACAGCTCCTACCTGGACTCGCCCTCCTACAGGAGCATCTATGACG
AGCCCGCCACCGCCAATGAGCGCGTCCAGTCCTCTGGCTACAGATATCTG
CCAGTGAGCCGCGACACCTACGGCTACTCGCCCCGTGCCATCTACGATCA
TCACTACAGCCGAACAATTCCAGCTAACTACGACGCAGAGAAGGCCTGGA
ATGATCATCTGAAGCGCATGCAGGAGATCGAGCGCAGGTACCCATCTCGC
TATGGTCTCTACTTGAGGGACAAGCCACTCACGCCCAACTCGCTGGTGCC
CCTGGAGTACGAGCCAGAGGACAAGCTGCTGGCTGAGCTCAACAAGGGTA
AGGATATCAAAGACATTTTCTAAAAGCTTTCTAGACCAT
BS15616.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:00:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mf-RQ | 507 | CG6803-PQ | 1..507 | 17..523 | 2535 | 100 | Plus |
Mf-RC | 507 | CG6803-PC | 1..507 | 17..523 | 2535 | 100 | Plus |
Mf-RM | 1095 | CG6803-PM | 1..481 | 17..497 | 2405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:00:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mf-RQ | 1440 | CG6803-RQ | 115..622 | 17..524 | 2540 | 100 | Plus |
Mf-RC | 824 | CG6803-RC | 115..622 | 17..524 | 2540 | 100 | Plus |
Mf-RM | 1939 | CG553-RM | 115..595 | 17..497 | 2405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:00:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15178280..15178490 | 317..107 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 15176157..15176295 | 524..386 | 695 | 100 | Minus |
3R | 32079331 | 3R | 15179038..15179129 | 108..17 | 460 | 100 | Minus |
3R | 32079331 | 3R | 15176362..15176437 | 389..314 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:00:02 has no hits.
BS15616.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:20 Download gff for
BS15616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RC | 1..507 | 17..523 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:31 Download gff for
BS15616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RC | 120..619 | 22..521 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:58 Download gff for
BS15616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RC | 120..619 | 22..521 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:32:46 Download gff for
BS15616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RC | 120..619 | 22..521 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:14 Download gff for
BS15616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RC | 120..619 | 22..521 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:14 Download gff for
BS15616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15176160..15176293 | 388..521 | 100 | <- | Minus |
3R | 15176364..15176433 | 318..387 | 100 | <- | Minus |
3R | 15178280..15178489 | 108..317 | 100 | <- | Minus |
3R | 15179039..15179124 | 22..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:58 Download gff for
BS15616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11001882..11002015 | 388..521 | 100 | <- | Minus |
arm_3R | 11002086..11002155 | 318..387 | 100 | <- | Minus |
arm_3R | 11004002..11004211 | 108..317 | 100 | <- | Minus |
arm_3R | 11004761..11004846 | 22..107 | 100 | | Minus |
BS15616.3prime Sequence
560 bp (560 high quality bases) assembled on 2006-12-21
> BS15616.3prime
TCCCTTAAAGGGCGCGCCAAACGAATGGTCTAGAAAGCTTTTAGCATTGT
CTTTGATATCCTTACCCTTGTTGAGCTCAGCCAGCAGCTTGTCCTCTGGC
TCGTACTCCAGGGGCACCTCCGAGTTGGGCGTGAGTGGCTTGTCCCTCAA
GTAGAGACCATAGCGAGATGGGTACCTGCGCTCGATCTCCTGCATGCGCT
TCAGATGATCATTCCAGGCCTTCTCTGCGTCGTAGTTAGCTGGAATTGTT
CGGCTGTAGTGATGATCGTAGATGGCACGGGGCGAGTAGCCGTAGGTGTC
GCGGCTCACTGGCAGATATCTGTAGCCAGAGGACTGGACGCGCTCATTGG
CGGTGGCGGGCTCGTCATAGATGCTCCTGTAGGAGGGCGAGTCCAGGTAG
GAGCTGTAGGGACGAGAGGCACGGGGCGCCTCGTGGGCACGGATATCCTC
GGAGCCCTTCAGGGACCTGATGTAGGACTGCCAGAATTTCGCCTTCTTGC
TGGGGCTCTCATTGCGCCCAATCATTTCCAAGTGGTTTTTGAACATGTCG
ACTGATAACT
BS15616.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6803-PC | 507 | Zeelin1-RC | 1..499 | 546..48 | 2445 | 99.5 | Minus |
CG6803-PD | 939 | Zeelin1-RD | 1..481 | 546..66 | 2355 | 99.5 | Minus |
CG6803-PE | 501 | Zeelin1-RE | 1..481 | 546..66 | 2355 | 99.5 | Minus |
CG6803-PB | 1098 | Zeelin1-RB | 1..481 | 546..66 | 2355 | 99.5 | Minus |
CG6803-PA | 474 | Zeelin1-RA | 1..301 | 546..246 | 1505 | 100 | Minus |
CG6803-PA | 474 | Zeelin1-RA | 302..460 | 224..66 | 745 | 98.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mf-RQ | 1440 | CG6803-RQ | 115..613 | 546..48 | 2465 | 99.6 | Minus |
Mf-RC | 824 | CG6803-RC | 115..613 | 546..48 | 2465 | 99.6 | Minus |
Mf-RM | 1939 | CG553-RM | 115..595 | 546..66 | 2375 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15178280..15178490 | 246..456 | 1055 | 100 | Plus |
3R | 32079331 | 3R | 15176166..15176295 | 48..177 | 620 | 98.5 | Plus |
3R | 32079331 | 3R | 15179038..15179129 | 455..546 | 460 | 100 | Plus |
3R | 32079331 | 3R | 15176362..15176437 | 174..249 | 365 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:58:36 has no hits.
BS15616.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:55 Download gff for
BS15616.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6803-PC | 1..507 | 41..546 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:14 Download gff for
BS15616.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6803-PC | 1..507 | 41..546 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 16:38:46 Download gff for
BS15616.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RC | 105..622 | 40..556 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:29:05 Download gff for
BS15616.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RC | 105..622 | 40..556 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:29:05 Download gff for
BS15616.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15178280..15178489 | 246..455 | 100 | <- | Plus |
3R | 15179039..15179139 | 456..556 | 96 | | Plus |
3R | 15176158..15176293 | 41..175 | 96 | <- | Plus |
3R | 15176364..15176433 | 176..245 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 16:38:46 Download gff for
BS15616.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11001880..11002015 | 41..175 | 96 | <- | Plus |
arm_3R | 11002086..11002155 | 176..245 | 100 | <- | Plus |
arm_3R | 11004002..11004211 | 246..455 | 100 | <- | Plus |
arm_3R | 11004761..11004861 | 456..556 | 96 | | Plus |
BS15616.5prime Sequence
537 bp (537 high quality bases) assembled on 2006-12-21
> BS15616.5prime
GAAGTTATCACTTTACATGTTCAAAAACCACTTGGAAATGATTGGGCGCA
ATGAGAGCCCCAGCAAGAAGGCGAAATTCTGGCAGTCCTACATCAGGTCC
CTGAAGGGCTCCGAGGATATCCGTGCCCACGAGGCGCCCCGTGCCTCTCG
TCCCTACAGCTCCTACCTGGACTCGCCCTCCTACAGGAGCATCTATGACG
AGCCCGCCACCGCCAATGAGCGCGTCCAGTCCTCTGGCTACAGATATCTG
CCAGTGAGCCGCGACACCTACGGCTACTCGCCCCGTGCCATCTACGATCA
TCACTACAGCCGAACAATTCCAGCTAACTACGACGCAGAGAAGGCCTGGA
ATGATCATCTGAAGCGCATGCAGGAGATCGAGCGCAGGTACCCATCTCGC
TATGGTCTCTACTTGAGGGACAAGCCACTCACGCCCAACTCGCTGGTGCC
CCTGGAGTACGAGCCAGAGGACAAGCTGCTGGCTGAGCTCAACAAGGGTA
AGGATATCAAAGACATTTTCTAAAAGCTTTCTAGACC
BS15616.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6803-PC | 507 | Zeelin1-RC | 1..507 | 17..523 | 2535 | 100 | Plus |
CG6803-PD | 939 | Zeelin1-RD | 1..481 | 17..497 | 2405 | 100 | Plus |
CG6803-PE | 501 | Zeelin1-RE | 1..481 | 17..497 | 2405 | 100 | Plus |
CG6803-PB | 1098 | Zeelin1-RB | 1..481 | 17..497 | 2405 | 100 | Plus |
CG6803-PA | 474 | Zeelin1-RA | 1..301 | 17..317 | 1505 | 100 | Plus |
CG6803-PA | 474 | Zeelin1-RA | 302..460 | 339..497 | 795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:18:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mf-RQ | 1440 | CG6803-RQ | 115..622 | 17..524 | 2540 | 100 | Plus |
Mf-RC | 824 | CG6803-RC | 115..622 | 17..524 | 2540 | 100 | Plus |
Mf-RM | 1939 | CG553-RM | 115..595 | 17..497 | 2405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:18:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15178280..15178490 | 317..107 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 15176157..15176295 | 524..386 | 695 | 100 | Minus |
3R | 32079331 | 3R | 15179038..15179129 | 108..17 | 460 | 100 | Minus |
3R | 32079331 | 3R | 15176362..15176437 | 389..314 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:18:18 has no hits.
BS15616.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:56 Download gff for
BS15616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6803-PC | 1..507 | 17..523 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:15 Download gff for
BS15616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6803-PC | 1..507 | 17..523 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 18:34:44 Download gff for
BS15616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RC | 115..622 | 17..524 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:08 Download gff for
BS15616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RC | 115..622 | 17..524 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:08 Download gff for
BS15616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15176157..15176293 | 388..524 | 100 | <- | Minus |
3R | 15176364..15176433 | 318..387 | 100 | <- | Minus |
3R | 15178280..15178489 | 108..317 | 100 | <- | Minus |
3R | 15179039..15179129 | 17..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 18:34:44 Download gff for
BS15616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11001879..11002015 | 388..524 | 100 | <- | Minus |
arm_3R | 11002086..11002155 | 318..387 | 100 | <- | Minus |
arm_3R | 11004002..11004211 | 108..317 | 100 | <- | Minus |
arm_3R | 11004761..11004851 | 17..107 | 100 | | Minus |
BS15616.pep Sequence
Translation from 16 to 522
> BS15616.pep
MFKNHLEMIGRNESPSKKAKFWQSYIRSLKGSEDIRAHEAPRASRPYSSY
LDSPSYRSIYDEPATANERVQSSGYRYLPVSRDTYGYSPRAIYDHHYSRT
IPANYDAEKAWNDHLKRMQEIERRYPSRYGLYLRDKPLTPNSLVPLEYEP
EDKLLAELNKGKDIKDIF*
BS15616.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:58:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mf-PQ | 168 | CG6803-PQ | 1..168 | 1..168 | 898 | 100 | Plus |
Mf-PC | 168 | CG6803-PC | 1..168 | 1..168 | 898 | 100 | Plus |
Mf-PI | 230 | CG6803-PI | 1..162 | 1..162 | 858 | 98.8 | Plus |
Mf-PH | 236 | CG6803-PH | 1..162 | 1..162 | 858 | 98.8 | Plus |
Mf-PE | 166 | CG6803-PE | 1..160 | 1..160 | 856 | 100 | Plus |