Clone Sequence Records
BS15620.complete Sequence
1877 bp assembled on 2010-02-11
GenBank Submission: KX802898
> BS15620.complete
GAAGTTATCAGTCGACATGAGGCTGTTTGCGGCAGCAACAGTTGCGCTTG
TATTGCTTCTGGGCCAAGCAGCTGGCGAGGAGCTTGCGGAGGAGCGAGCG
GGACAGGCACAGGGCGATGCGGAGAGCACGGAATCTTCAGAAACAACAAC
GGACCAGGCGGTGAGTGAGCCCCCGATCACGCTGGTCCACGTTCTGAATC
CCGGCGAGCGGGAGTATTTGTCACCCAACCTGATTGGTGTCCAGAACATT
GCGATGACCTTCCTGCCACTGTCGATGAACTTTGTGAATATCATCGACGC
CTTTCGGGAAATCACCGCCGGAGTGCGCTATGAGATCCTGCTAAACGCGC
TAGACACAAAGGCAATACAGCCGGCGGAAGCGGACATAGTCTGCCGCCTG
GTCATCCTGGAAAAGCCTTGGCTGCGCACCCAGTGGGGCGACAAGCACCG
CGAACTGGTTACCTCCAATTGCACCGACCCAGCGGTGAACTCGGTGGCCG
GAGATCCGGCAGAGAAGGCGCGACTGCTTAACGAGAAATATGTCCATCGC
AGCAGACGCAGCGCGAACGATATCTTGGGTAGGCATAAGCCTTACGATGA
AGAGGCGGCGAAGGCGCAGCTGCAAAAATCTCTGGACAAACTGACCGCGG
GAGAGGGTCCCCATTACAAAATTGTGAAAGTATACTCAGCCTCGCGGCAA
GTGGATTCAGGCATCTTGACCCGCATCGATGCGGATCTAATCGACGGGTC
GGAGGAGCAGCACCGCTGTATCGTGGATATCTGGACAAAGGTCTGGGTGA
GGAAGGATGAGCACGAAATCACCTTTAAGTGCCGCAACCAGCCGGTGGTC
CAGGCCCGACACACGCGATCCGTGGAGTGGGCCGAGAAGAAGACGCACAA
GAAGCACAGCCATCGCTTTGACAAGGTGGACCACCTCTTCTACAAGTTCC
AGGTGCGATTTGGCCGTCGCTACGTAAGCACCGCCGAGCGCCAGATGCGC
CTGCGCATTTTCCGTCAGAACCTGAAGACTATCGAGGAGCTAAACGCCAA
CGAGATGGGCAGCGCCAAGTACGGCATCACGGAGTTTGCTGATATGACCA
GCTCGGAATACAAGGAACGCACGGGACTCTGGCAGCGTGATGAGGCAAAG
GCCACTGGCGGATCGGCGGCTGTCGTACCGGCTTACCATGGTGAACTGCC
GAAGGAGTTTGACTGGAGGCAGAAGGATGCTGTCACCCAGGTGAAGAATC
AGGGATCCTGCGGTTCATGCTGGGCCTTCAGTGTGACCGGCAACATCGAA
GGCCTGTACGCAGTGAAAACGGGCGAATTGAAAGAGTTCTCCGAACAGGA
GCTGCTGGACTGTGATACCACGGATAGTGCCTGCAACGGCGGCCTCATGG
ACAATGCTTACAAGGCCATTAAGGATATTGGCGGCCTAGAGTACGAGGCT
GAGTACCCATACAAGGCCAAAAAGAATCAGTGCCACTTCAACAGGACTTT
GTCCCACGTTCAGGTTGCCGGCTTCGTGGATCTGCCGAAGGGAAATGAGA
CCGCCATGCAGGAGTGGCTTCTCGCCAATGGTCCCATTTCGATCGGCATC
AATGCGAATGCTATGCAGTTCTATCGCGGCGGAGTTTCCCATCCGTGGAA
GGCCCTGTGCTCCAAGAAAAACCTCGACCACGGTGTTCTAGTTGTGGGGT
ATGGCGTCTCCGACTATCCCAATTTCCACAAGACCTTGCCCTACTGGATT
GTGAAGAACTCGTGGGGTCCGCGCTGGGGAGAGCAGGGCTATTATCGCGT
TTATCGTGGTGACAACACTTGCGGCGTCAGCGAAATGGCCACTTCGGCTG
TGCTGGCCTAGAAGCTTTCTAGACCAT
BS15620.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:13:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12163-RA | 1845 | CG12163-PA | 1..1845 | 17..1861 | 9225 | 100 | Plus |
| CG12163-RB | 1428 | CG12163-PB | 109..1428 | 542..1861 | 6600 | 100 | Plus |
| CG12163-RC | 1053 | CG12163-PC | 1..527 | 17..543 | 2635 | 100 | Plus |
| CG12163-RB | 1428 | CG12163-PB | 1..108 | 17..124 | 540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12163-RA | 2299 | CG12163-RA | 213..2060 | 15..1862 | 9240 | 100 | Plus |
| CG12163-RB | 1882 | CG12163-RB | 323..1643 | 542..1862 | 6605 | 100 | Plus |
| CG12163-RC | 1425 | CG12163-RC | 213..741 | 15..543 | 2645 | 100 | Plus |
| CG12163-RB | 1882 | CG12163-RB | 213..322 | 15..124 | 550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5238453..5239197 | 1414..670 | 3725 | 100 | Minus |
| 3R | 32079331 | 3R | 5243836..5244256 | 543..123 | 2105 | 100 | Minus |
| 3R | 32079331 | 3R | 5237890..5238167 | 1862..1585 | 1345 | 98.9 | Minus |
| 3R | 32079331 | 3R | 5238212..5238394 | 1596..1414 | 915 | 100 | Minus |
| 3R | 32079331 | 3R | 5239492..5239619 | 669..542 | 640 | 100 | Minus |
| 3R | 32079331 | 3R | 5251424..5251533 | 124..15 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:13:27 has no hits.
BS15620.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-11 10:12:09 Download gff for
BS15620.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12163-RA | 216..2060 | 17..1861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:31 Download gff for
BS15620.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12163-RA | 215..2059 | 17..1861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:04 Download gff for
BS15620.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12163-RA | 216..2060 | 17..1861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:32 Download gff for
BS15620.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12163-RA | 215..2059 | 17..1861 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:32 Download gff for
BS15620.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5237891..5238156 | 1596..1861 | 100 | <- | Minus |
| 3R | 5238213..5238394 | 1414..1595 | 100 | <- | Minus |
| 3R | 5238454..5239197 | 670..1413 | 100 | <- | Minus |
| 3R | 5239492..5239619 | 542..669 | 100 | <- | Minus |
| 3R | 5243838..5244254 | 125..541 | 100 | <- | Minus |
| 3R | 5251424..5251531 | 17..124 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:31 Download gff for
BS15620.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1063613..1063878 | 1596..1861 | 100 | <- | Minus |
| arm_3R | 1063935..1064116 | 1414..1595 | 100 | <- | Minus |
| arm_3R | 1064176..1064919 | 670..1413 | 100 | <- | Minus |
| arm_3R | 1065214..1065341 | 542..669 | 100 | <- | Minus |
| arm_3R | 1069560..1069976 | 125..541 | 100 | <- | Minus |
| arm_3R | 1077146..1077253 | 17..124 | 100 | | Minus |
BS15620.3prime Sequence
873 bp (823 high quality bases) assembled on 2006-12-21
> BS15620.3prime
ATGGTCTAGAAAGCTTCTAGGCTTGCACAGCCGAAGTGGCCATTTCGCTG
ACGCCGCAAGTGTTGTCACCACGATAAACGCGATAATAGCCCTGCTCTCC
CCAGCGCGGACCCCACGAGTTCTTCACAATCCAGTAGGGCAAGGTCTTGT
GGAAATTGGGATAGTCGGAGACGCCATACCCCACAACTAGAACACCGTGG
TCGAGGTTTTTCTTGGAGCACAGGGCCTTCCACGGATGGGAAACTCCGCC
GCGATAGAACTGCATAGCATTCGCATTGATGCCGATCGAAATGGGACCAT
TGGCGAGAAGCCACTCCTGCATGGCGGTCTCATTTCCCTTCGGCAGATCC
ACGAAGCCGGCAACCTGAACGTGGGACAAAGTCCTGTTGAAGTGGCACTG
ATTCTTTTTGGCCTTGTATGGGTACTCAGCCTCGTACTCTAGGCCGCCAA
TATCCTTAATGGCCTTGTAAGCATTGTCCATGAGGCCGCCGTTGCAGGCA
CTATCCGTGGTATCACAGTCCAGCAGCTCCTGTTCGGAGAACTCTTTCAA
TTCGCCCGTTTTCACTGCGTACAGGCCTTCGATGTTGCCGGTCACACTGA
AGGCCCAGCATGAACCGCAGGATCCCTGATTCTTCACCTGGGTGACAGCA
TCCTTCTGCCTCCAGTCAAACTCCTTCGGCAGTTCACCATGGTAAGCCGG
TACGACAGCCGCCGATCCGCCAGTGGCCTTTGCCTCATCACGCTGCCAGA
GTCCCGTGCGTTCCTTGTATTCCGAGCTGGTCATATCAGCAAACTCCGTG
ATGCCGTACTTGGCGCTGCCCATCTCGTTGGCGTTTAGCTCCTCGATAGT
CTTCAGGTTCTGACGGGAAATGC
BS15620.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12163-PB | 1428 | CG12163-RB | 572..1420 | 873..25 | 4220 | 99.8 | Minus |
| CG12163-PA | 1845 | CG12163-RA | 989..1837 | 873..25 | 4220 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:41:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12163-RA | 2299 | CG12163-RA | 1203..2060 | 873..16 | 4245 | 99.7 | Minus |
| CG12163-RB | 1882 | CG12163-RB | 786..1643 | 873..16 | 4245 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:41:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5238453..5238862 | 464..873 | 2035 | 99.8 | Plus |
| 3R | 32079331 | 3R | 5237890..5238167 | 16..293 | 1315 | 98.2 | Plus |
| 3R | 32079331 | 3R | 5238212..5238394 | 282..464 | 915 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 16:41:05 has no hits.
BS15620.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:04 Download gff for
BS15620.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12163-PA | 989..1845 | 17..873 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:25 Download gff for
BS15620.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12163-PA | 989..1845 | 17..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 15:52:11 Download gff for
BS15620.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12163-RB | 786..1649 | 8..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:09:20 Download gff for
BS15620.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12163-RB | 786..1649 | 8..873 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:09:20 Download gff for
BS15620.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5237884..5238156 | 8..282 | 98 | <- | Plus |
| 3R | 5238213..5238394 | 283..464 | 100 | <- | Plus |
| 3R | 5238454..5238862 | 465..873 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 15:52:11 Download gff for
BS15620.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1063606..1063878 | 8..282 | 98 | <- | Plus |
| arm_3R | 1063935..1064116 | 283..464 | 100 | <- | Plus |
| arm_3R | 1064176..1064584 | 465..873 | 99 | | Plus |
BS15620.5prime Sequence
821 bp (798 high quality bases) assembled on 2006-12-21
> BS15620.5prime
GAAGTTATCATTTGACGTGAGGCTGTTTGCGGCAGCAACAGTTGCGCTTG
TATTGCTTCTGGGCCAAGCAGCTGGCGAGGAGCTTGCGGAGGAGCGAGCG
GGACAGGCACAGGGCGATGCGGAGAGCACGGAATCTTCAGAAACAACAAC
GGACCAGGCGGTGAGTGAGCCCCCGATCACGCTGGTCCACGTTCTGAATC
CCGGCGAGCGGGAGTATTTGTCACCCAACCTGATTGGTGTCCAGAACATT
GCGATGACCTTCCTGCCACTGTCGATGAACTTTGTGAATATCATCGACGC
CTTTCGGGAAATCACCGCCGGAGTGCGCTATGAGATCCTGCTAAACGCGC
TAGACACAAAGGCAATACAGCCGGCGGAAGCGGACATAGTCTGCCGCCTG
GTCATCCTGGAAAAGCCTTGGCTGCGCACCCAGTGGGGCGACAAGCACCG
CGAACTGGTTACCTCCAATTGCACCGACCCAGCGGTGAACTCGGTGGCCG
GAGATCCGGCAGAGAAGGCGCGACTGCTTAACGAGAAATATGTCCATCGC
AGCAGACGCAGCGCGAACGATATCTTGGGTAGGCATAAGCCTTACGATGA
AGAGGCGGCGAAGGCGCAGCTGCAAAAATCTCTGGACAAACTGACCGCGG
GAGAGGGTCCCCATTACAAAATTGTGAAAGTATACTCAGCCTCGCGGCAA
GTGGATTCAGGCATCTTGACCCGCATCGATGCGGATCTAATCGACGGGTC
GGAGGAGCAGCACCGCTGTATCGTGGATATCTGGACAAAGGTCTGGGTGA
GGAAGGATGAGCACGAAATCA
BS15620.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12163-PA | 1845 | CG12163-RA | 2..805 | 18..821 | 4020 | 100 | Plus |
| CG12163-PB | 1428 | CG12163-RB | 109..388 | 542..821 | 1400 | 100 | Plus |
| CG12163-PB | 1428 | CG12163-RB | 2..108 | 18..124 | 535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 12:20:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12163-RA | 2299 | CG12163-RA | 216..1019 | 18..821 | 4020 | 100 | Plus |
| CG12163-RC | 1425 | CG12163-RC | 216..741 | 18..543 | 2630 | 100 | Plus |
| CG12163-RB | 1882 | CG12163-RB | 323..602 | 542..821 | 1400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 12:20:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5243836..5244256 | 543..123 | 2105 | 100 | Minus |
| 3R | 32079331 | 3R | 5239046..5239197 | 821..670 | 760 | 100 | Minus |
| 3R | 32079331 | 3R | 5239492..5239619 | 669..542 | 640 | 100 | Minus |
| 3R | 32079331 | 3R | 5251424..5251530 | 124..18 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 12:20:05 has no hits.
BS15620.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:05 Download gff for
BS15620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12163-PA | 2..804 | 18..820 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:27 Download gff for
BS15620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12163-PA | 2..804 | 18..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:34:48 Download gff for
BS15620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12163-RA | 213..1018 | 15..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 13:59:41 Download gff for
BS15620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12163-RA | 213..1018 | 15..820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 13:59:41 Download gff for
BS15620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5243838..5244254 | 125..541 | 100 | <- | Minus |
| 3R | 5251424..5251533 | 15..124 | 99 | | Minus |
| 3R | 5239047..5239197 | 670..820 | 100 | <- | Minus |
| 3R | 5239492..5239619 | 542..669 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:34:48 Download gff for
BS15620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1064769..1064919 | 670..820 | 100 | <- | Minus |
| arm_3R | 1065214..1065341 | 542..669 | 100 | <- | Minus |
| arm_3R | 1069560..1069976 | 125..541 | 100 | <- | Minus |
| arm_3R | 1077146..1077255 | 15..124 | 99 | | Minus |
BS15620.pep Sequence
Translation from 16 to 1860
> BS15620.pep
MRLFAAATVALVLLLGQAAGEELAEERAGQAQGDAESTESSETTTDQAVS
EPPITLVHVLNPGEREYLSPNLIGVQNIAMTFLPLSMNFVNIIDAFREIT
AGVRYEILLNALDTKAIQPAEADIVCRLVILEKPWLRTQWGDKHRELVTS
NCTDPAVNSVAGDPAEKARLLNEKYVHRSRRSANDILGRHKPYDEEAAKA
QLQKSLDKLTAGEGPHYKIVKVYSASRQVDSGILTRIDADLIDGSEEQHR
CIVDIWTKVWVRKDEHEITFKCRNQPVVQARHTRSVEWAEKKTHKKHSHR
FDKVDHLFYKFQVRFGRRYVSTAERQMRLRIFRQNLKTIEELNANEMGSA
KYGITEFADMTSSEYKERTGLWQRDEAKATGGSAAVVPAYHGELPKEFDW
RQKDAVTQVKNQGSCGSCWAFSVTGNIEGLYAVKTGELKEFSEQELLDCD
TTDSACNGGLMDNAYKAIKDIGGLEYEAEYPYKAKKNQCHFNRTLSHVQV
AGFVDLPKGNETAMQEWLLANGPISIGINANAMQFYRGGVSHPWKALCSK
KNLDHGVLVVGYGVSDYPNFHKTLPYWIVKNSWGPRWGEQGYYRVYRGDN
TCGVSEMATSAVLA*
BS15620.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:17:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12163-PA | 614 | CG12163-PA | 1..614 | 1..614 | 3244 | 100 | Plus |
| CG12163-PB | 475 | CG12163-PB | 37..475 | 176..614 | 2363 | 100 | Plus |
| CG12163-PC | 350 | CG12163-PC | 1..179 | 1..179 | 888 | 98.9 | Plus |
| Cp1-PA | 341 | CG6692-PA | 23..337 | 302..609 | 583 | 39.3 | Plus |
| Cp1-PC | 371 | CG6692-PC | 53..367 | 302..609 | 583 | 39.3 | Plus |
| CG12163-PB | 475 | CG12163-PB | 1..161 | 1..178 | 185 | 36.1 | Plus |
