Clone Sequence Records
BS15625.3prime Sequence
860 bp (707 high quality bases) assembled on 2006-12-21
> BS15625.3prime
ATGGTCTAGAAAGCTTCTCCCTTTAAAGATCATCGTCGCCGTTGTCGCCG
GGCGAGTTAACTGGCAAGTTGTTACCAGATCCTGAGGTGTTGCCGGTTTG
ACCGGGGAATCTGAAGTTCTGTCCGAATCCACGGGACTGCTGCAAAGTCT
GGGCAAACATCTCGTACTTCCTGATGTCATTATCGGACACCGAACGGCGA
GCGAACTTCATGGCCTCCTCGAAGTGGGCGCTAGTAATCTCCGGCACTGG
ATCGTCCTCGTCCATGTCCATCGCGGAGTTCTGATTTTCGGCGCGCTCCT
TCTCGCGACGAATTTCAGCCTCGATGGCCTGTCGGATGGCCAGCTTGCAA
GCCCGCTGGCAGATCTCGGTCAGATCGGCGCCAGAGAAGCCCTGCGTCAC
CTTGGCGATGTAGGTAAGGTCTACTTCCTTGGCCAGCGGCGACTTGCGCA
AGTTAGCCTTCAGGATAGCCTCACGCGATTTGTCGTCGGGCAGCGGAATA
TAGATCAACTGATCCAGACGGCCCGGACGGAGGATGGCCGGATCGATAAT
GTCCGGGCGATTGGTGGCTCCGATGATGAACACATTCTTCTTGGCTCCCA
TGCCATCCATTTCGGTAAGGATCTGATTGATCACACGATCAGCGGCGCCG
CCAGCATCGCCGACATTACCGCCACGGGCTTTGGCGATCGAGTCCAGCTC
GTCGAAAAAGAGCACACAAGGAGCCGCCGAGCGGGCCTTATCGAAGATGT
CGCGCACGTTGGCCTCAGACTCGCCGAACCACATGGTCAGCAGTTCGGGA
CCCTTGACTGAGATGAAGTTCGCCTGGCACTCGTTTGGCATGGCCTTGGC
CAGCAGCGTC
BS15625.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2331-PA | 2406 | TER94-RA | 1588..2399 | 835..24 | 4035 | 99.8 | Minus |
CG2331-PB | 894 | TER94-RB | 76..887 | 835..24 | 4035 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:59:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TER94-RD | 3125 | CG2331-RD | 1800..2636 | 860..24 | 4125 | 99.6 | Minus |
TER94-RC | 3058 | CG2331-RC | 1733..2569 | 860..24 | 4125 | 99.6 | Minus |
TER94-RA | 3016 | CG2331-RA | 1691..2527 | 860..24 | 4125 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:59:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9992102..9992696 | 860..266 | 2915 | 99.3 | Minus |
2R | 25286936 | 2R | 9992763..9992917 | 265..111 | 775 | 100 | Minus |
2R | 25286936 | 2R | 9992981..9993070 | 113..24 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 13:59:50 has no hits.
BS15625.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:12 Download gff for
BS15625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TER94-PB | 51..894 | 17..860 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:34 Download gff for
BS15625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2331-PB | 51..894 | 17..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:13:10 Download gff for
BS15625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TER94-RA | 1691..2535 | 16..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:50:33 Download gff for
BS15625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TER94-RA | 1691..2535 | 16..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:50:33 Download gff for
BS15625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9992984..9993078 | 16..110 | 96 | | Minus |
2R | 9992102..9992696 | 266..860 | 99 | -> | Minus |
2R | 9992763..9992917 | 111..265 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:13:10 Download gff for
BS15625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5879607..5880201 | 266..860 | 99 | -> | Minus |
arm_2R | 5880268..5880422 | 111..265 | 100 | -> | Minus |
arm_2R | 5880489..5880583 | 16..110 | 96 | | Minus |
BS15625.5prime Sequence
873 bp (795 high quality bases) assembled on 2006-12-21
> BS15625.5prime
GAAGTTATCCTTCGACATGCAGCCCAGTCGCGGTGTCCTTTTCTACGGAC
CCCCTGGTTGCGGTAAGACGCTGCTGGCCAAGGCCATTGCCAACGAGTGC
CAGGCGAACTTCATCTCAGTCAAGGGTCCCGAACTGCTGACCATGTGGTT
CGGCGAGTCTGAGGCCAACGTGCGCGACATCTTCGATAAGGCCCGCTCGG
CGGCTCCTTGTGTGCTCTTCTTCGACGAGCTGGACTCGATCGCCAAAGCC
CGTGGCGGTAATGTCGGCGATGCTGGCGGCGCCGCTGATCGTGTGATCAA
TCAGATCCTTACCGAAATGGATGGCATGGGAGCCAAGAAGAATGTGTTCA
TCATCGGAGCCACCAATCGCCCGGACATTATCGATCCGGCCATCCTCCGT
CCGGGCCGTCTGGATCAGTTGATCTATATTCCGCTGCCCGACGACAAATC
GCGTGAGGCTATCCTGAAGGCTAACTTGCGCAAGTCGCCGCTGGCCAAGG
AAGTAGACCTTACCTACATCGCCAAGGTGACGCAGGGCTTCTCTGGCGCC
GATCTGACCGAGATCTGCCAGCGGGCTTGCAAGCTGGCCATCCGACAGGC
CATCGAGGCTGAAATTCGTCGCGAGAAGGAGCGCGCCGAAAATCAGAACT
CCGCGATGGACATGGACGAGGACGATCCAGTGCCGGAGATTACTAGCGCC
CACTTCGAGGAGGCCATGAAGTTCGCTCGCCGTTCGGTGTCCGATAATGA
CATCAGGAAGTACGAGATGTTTGCCCAGACTTTGCAGCAGTCCCGTGGAT
TCGGACAGAACTTCAGATTCCCCCGGTCAACCGGGCACACCTCAGGATCT
GGTAACAACTTGCCAGTTAACTC
BS15625.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2331-PA | 2406 | TER94-RA | 1512..2319 | 16..823 | 4040 | 100 | Plus |
CG2331-PB | 894 | TER94-RB | 1..807 | 17..823 | 4035 | 100 | Plus |
CG2331-PA | 2406 | TER94-RA | 2333..2369 | 837..873 | 185 | 100 | Plus |
CG2331-PB | 894 | TER94-RB | 821..857 | 837..873 | 185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:20:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TER94-RD | 3125 | CG2331-RD | 1749..2606 | 16..873 | 4215 | 99.5 | Plus |
TER94-RC | 3058 | CG2331-RC | 1682..2539 | 16..873 | 4215 | 99.5 | Plus |
TER94-RA | 3016 | CG2331-RA | 1640..2497 | 16..873 | 4215 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:20:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9992051..9992696 | 16..661 | 3230 | 100 | Plus |
2R | 25286936 | 2R | 9992763..9992917 | 662..816 | 775 | 100 | Plus |
2R | 25286936 | 2R | 9992981..9993040 | 814..873 | 210 | 90 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:20:57 has no hits.
BS15625.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:13 Download gff for
BS15625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TER94-PA | 1507..2369 | 11..873 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:36 Download gff for
BS15625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2331-PA | 1507..2369 | 11..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 13:14:45 Download gff for
BS15625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TER94-RA | 1635..2497 | 11..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:32:50 Download gff for
BS15625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TER94-RA | 1635..2497 | 11..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:32:50 Download gff for
BS15625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9992046..9992696 | 11..661 | 99 | -> | Plus |
2R | 9992763..9992917 | 662..816 | 100 | -> | Plus |
2R | 9992984..9993040 | 817..873 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 13:14:45 Download gff for
BS15625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5879551..5880201 | 11..661 | 99 | -> | Plus |
arm_2R | 5880268..5880422 | 662..816 | 100 | -> | Plus |
arm_2R | 5880489..5880545 | 817..873 | 93 | | Plus |
BS15625.complete Sequence
926 bp assembled on 2008-08-14
GenBank Submission: KX802516
> BS15625.complete
GAAGTTATCCTTCGACATGCAGCCCAGTCGCGGTGTCCTTTTCTACGGAC
CCCCTGGTTGCGGTAAGACGCTGCTGGCCAAGGCCATTGCCAACGAGTGC
CAGGCGAACTTCATCTCAGTCAAGGGTCCCGAACTGCTGACCATGTGGTT
CGGCGAGTCTGAGGCCAACGTGCGCGACATCTTCGATAAGGCCCGCTCGG
CGGCTCCTTGTGTGCTCTTCTTCGACGAGCTGGACTCGATCGCCAAAGCC
CGTGGCGGTAATGTCGGCGATGCTGGCGGCGCCGCTGATCGTGTGATCAA
TCAGATCCTTACCGAAATGGATGGCATGGGAGCCAAGAAGAATGTGTTCA
TCATCGGAGCCACCAATCGCCCGGACATTATCGATCCGGCCATCCTCCGT
CCGGGCCGTCTGGATCAGTTGATCTATATTCCGCTGCCCGACGACAAATC
GCGTGAGGCTATCCTGAAGGCTAACTTGCGCAAGTCGCCGCTGGCCAAGG
AAGTAGACCTTACCTACATCGCCAAGGTGACGCAGGGCTTCTCTGGCGCC
GATCTGACCGAGATCTGCCAGCGGGCTTGCAAGCTGGCCATCCGACAGGC
CATCGAGGCTGAAATTCGTCGCGAGAAGGAGCGCGCCGAAAATCAGAACT
CCGCGATGGACATGGACGAGGACGATCCAGTGCCGGAGATTACTAGCGCC
CACTTCGAGGAGGCCATGAAGTTCGCTCGCCGTTCGGTGTCCGATAATGA
CATCAGGAAGTACGAGATGTTTGCCCAGACTTTGCAGCAGTCCCGTGGAT
TCGGACAGAACTTCAGATTCCCCGGTCAAACCGGCAACACCTCAGGATCT
GGTAACAACTTGCCAGTTAACTCGCCCGGCGACAACGGCGACGATGATCT
TTACAGTTAGAAGCTTTCTAGACCAT
BS15625.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:33:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TER94-RD | 2280 | CG2331-PD | 1386..2280 | 16..910 | 4475 | 100 | Plus |
TER94-RC | 2481 | CG2331-PC | 1587..2481 | 16..910 | 4475 | 100 | Plus |
TER94-RA | 2406 | CG2331-PA | 1512..2406 | 16..910 | 4475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:33:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TER94-RD | 3125 | CG2331-RD | 1749..2644 | 16..911 | 4480 | 100 | Plus |
TER94-RC | 3058 | CG2331-RC | 1682..2577 | 16..911 | 4480 | 100 | Plus |
TER94-RA | 3016 | CG2331-RA | 1640..2535 | 16..911 | 4480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:33:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9992051..9992696 | 16..661 | 3230 | 100 | Plus |
2R | 25286936 | 2R | 9992763..9992917 | 662..816 | 775 | 100 | Plus |
2R | 25286936 | 2R | 9992981..9993078 | 814..911 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:33:43 has no hits.
BS15625.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:50:40 Download gff for
BS15625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TER94-RC | 1582..2489 | 11..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:54:42 Download gff for
BS15625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TER94-RA | 1641..2534 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:52 Download gff for
BS15625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TER94-RC | 1588..2481 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:38 Download gff for
BS15625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TER94-RA | 1641..2534 | 17..910 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:38 Download gff for
BS15625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9992052..9992696 | 17..661 | 100 | -> | Plus |
2R | 9992763..9992917 | 662..816 | 100 | -> | Plus |
2R | 9992984..9993077 | 817..910 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:42 Download gff for
BS15625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5879557..5880201 | 17..661 | 100 | -> | Plus |
arm_2R | 5880268..5880422 | 662..816 | 100 | -> | Plus |
arm_2R | 5880489..5880582 | 817..910 | 100 | | Plus |
BS15625.pep Sequence
Translation from 16 to 909
> BS15625.pep
MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEA
NVRDIFDKARSAAPCVLFFDELDSIAKARGGNVGDAGGAADRVINQILTE
MDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDDKSREAIL
KANLRKSPLAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEI
RREKERAENQNSAMDMDEDDPVPEITSAHFEEAMKFARRSVSDNDIRKYE
MFAQTLQQSRGFGQNFRFPGQTGNTSGSGNNLPVNSPGDNGDDDLYS*
BS15625.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TER94-PD | 759 | CG2331-PD | 463..759 | 1..297 | 1534 | 100 | Plus |
TER94-PA | 801 | CG2331-PA | 505..801 | 1..297 | 1534 | 100 | Plus |
TER94-PC | 826 | CG2331-PC | 530..826 | 1..297 | 1534 | 100 | Plus |
TER94-PE | 825 | CG2331-PE | 530..825 | 1..297 | 1517 | 99.7 | Plus |
smid-PI | 910 | CG8571-PI | 664..893 | 6..250 | 568 | 48.4 | Plus |
TER94-PD | 759 | CG2331-PD | 190..383 | 1..197 | 412 | 41.6 | Plus |
TER94-PA | 801 | CG2331-PA | 232..425 | 1..197 | 412 | 41.6 | Plus |
TER94-PC | 826 | CG2331-PC | 257..450 | 1..197 | 412 | 41.6 | Plus |
TER94-PE | 825 | CG2331-PE | 257..450 | 1..197 | 412 | 41.6 | Plus |