Clone BS15625 Report

Search the DGRC for BS15625

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:156
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptTER94-RB
Protein status:BS15625.pep: full length peptide match
Sequenced Size:926

Clone Sequence Records

BS15625.3prime Sequence

860 bp (707 high quality bases) assembled on 2006-12-21

> BS15625.3prime
ATGGTCTAGAAAGCTTCTCCCTTTAAAGATCATCGTCGCCGTTGTCGCCG
GGCGAGTTAACTGGCAAGTTGTTACCAGATCCTGAGGTGTTGCCGGTTTG
ACCGGGGAATCTGAAGTTCTGTCCGAATCCACGGGACTGCTGCAAAGTCT
GGGCAAACATCTCGTACTTCCTGATGTCATTATCGGACACCGAACGGCGA
GCGAACTTCATGGCCTCCTCGAAGTGGGCGCTAGTAATCTCCGGCACTGG
ATCGTCCTCGTCCATGTCCATCGCGGAGTTCTGATTTTCGGCGCGCTCCT
TCTCGCGACGAATTTCAGCCTCGATGGCCTGTCGGATGGCCAGCTTGCAA
GCCCGCTGGCAGATCTCGGTCAGATCGGCGCCAGAGAAGCCCTGCGTCAC
CTTGGCGATGTAGGTAAGGTCTACTTCCTTGGCCAGCGGCGACTTGCGCA
AGTTAGCCTTCAGGATAGCCTCACGCGATTTGTCGTCGGGCAGCGGAATA
TAGATCAACTGATCCAGACGGCCCGGACGGAGGATGGCCGGATCGATAAT
GTCCGGGCGATTGGTGGCTCCGATGATGAACACATTCTTCTTGGCTCCCA
TGCCATCCATTTCGGTAAGGATCTGATTGATCACACGATCAGCGGCGCCG
CCAGCATCGCCGACATTACCGCCACGGGCTTTGGCGATCGAGTCCAGCTC
GTCGAAAAAGAGCACACAAGGAGCCGCCGAGCGGGCCTTATCGAAGATGT
CGCGCACGTTGGCCTCAGACTCGCCGAACCACATGGTCAGCAGTTCGGGA
CCCTTGACTGAGATGAAGTTCGCCTGGCACTCGTTTGGCATGGCCTTGGC
CAGCAGCGTC

BS15625.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG2331-PA 2406 TER94-RA 1588..2399 835..24 4035 99.8 Minus
CG2331-PB 894 TER94-RB 76..887 835..24 4035 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:59:52
Subject Length Description Subject Range Query Range Score Percent Strand
TER94-RD 3125 CG2331-RD 1800..2636 860..24 4125 99.6 Minus
TER94-RC 3058 CG2331-RC 1733..2569 860..24 4125 99.6 Minus
TER94-RA 3016 CG2331-RA 1691..2527 860..24 4125 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9992102..9992696 860..266 2915 99.3 Minus
2R 25286936 2R 9992763..9992917 265..111 775 100 Minus
2R 25286936 2R 9992981..9993070 113..24 450 100 Minus
Blast to na_te.dros performed on 2015-02-02 13:59:50 has no hits.

BS15625.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:12 Download gff for BS15625.3prime
Subject Subject Range Query Range Percent Splice Strand
TER94-PB 51..894 17..860 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:34 Download gff for BS15625.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2331-PB 51..894 17..860 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:13:10 Download gff for BS15625.3prime
Subject Subject Range Query Range Percent Splice Strand
TER94-RA 1691..2535 16..860 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:50:33 Download gff for BS15625.3prime
Subject Subject Range Query Range Percent Splice Strand
TER94-RA 1691..2535 16..860 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:50:33 Download gff for BS15625.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9992984..9993078 16..110 96   Minus
2R 9992102..9992696 266..860 99 -> Minus
2R 9992763..9992917 111..265 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:13:10 Download gff for BS15625.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5879607..5880201 266..860 99 -> Minus
arm_2R 5880268..5880422 111..265 100 -> Minus
arm_2R 5880489..5880583 16..110 96   Minus

BS15625.5prime Sequence

873 bp (795 high quality bases) assembled on 2006-12-21

> BS15625.5prime
GAAGTTATCCTTCGACATGCAGCCCAGTCGCGGTGTCCTTTTCTACGGAC
CCCCTGGTTGCGGTAAGACGCTGCTGGCCAAGGCCATTGCCAACGAGTGC
CAGGCGAACTTCATCTCAGTCAAGGGTCCCGAACTGCTGACCATGTGGTT
CGGCGAGTCTGAGGCCAACGTGCGCGACATCTTCGATAAGGCCCGCTCGG
CGGCTCCTTGTGTGCTCTTCTTCGACGAGCTGGACTCGATCGCCAAAGCC
CGTGGCGGTAATGTCGGCGATGCTGGCGGCGCCGCTGATCGTGTGATCAA
TCAGATCCTTACCGAAATGGATGGCATGGGAGCCAAGAAGAATGTGTTCA
TCATCGGAGCCACCAATCGCCCGGACATTATCGATCCGGCCATCCTCCGT
CCGGGCCGTCTGGATCAGTTGATCTATATTCCGCTGCCCGACGACAAATC
GCGTGAGGCTATCCTGAAGGCTAACTTGCGCAAGTCGCCGCTGGCCAAGG
AAGTAGACCTTACCTACATCGCCAAGGTGACGCAGGGCTTCTCTGGCGCC
GATCTGACCGAGATCTGCCAGCGGGCTTGCAAGCTGGCCATCCGACAGGC
CATCGAGGCTGAAATTCGTCGCGAGAAGGAGCGCGCCGAAAATCAGAACT
CCGCGATGGACATGGACGAGGACGATCCAGTGCCGGAGATTACTAGCGCC
CACTTCGAGGAGGCCATGAAGTTCGCTCGCCGTTCGGTGTCCGATAATGA
CATCAGGAAGTACGAGATGTTTGCCCAGACTTTGCAGCAGTCCCGTGGAT
TCGGACAGAACTTCAGATTCCCCCGGTCAACCGGGCACACCTCAGGATCT
GGTAACAACTTGCCAGTTAACTC

BS15625.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG2331-PA 2406 TER94-RA 1512..2319 16..823 4040 100 Plus
CG2331-PB 894 TER94-RB 1..807 17..823 4035 100 Plus
CG2331-PA 2406 TER94-RA 2333..2369 837..873 185 100 Plus
CG2331-PB 894 TER94-RB 821..857 837..873 185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
TER94-RD 3125 CG2331-RD 1749..2606 16..873 4215 99.5 Plus
TER94-RC 3058 CG2331-RC 1682..2539 16..873 4215 99.5 Plus
TER94-RA 3016 CG2331-RA 1640..2497 16..873 4215 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9992051..9992696 16..661 3230 100 Plus
2R 25286936 2R 9992763..9992917 662..816 775 100 Plus
2R 25286936 2R 9992981..9993040 814..873 210 90 Plus
Blast to na_te.dros performed on 2015-02-11 09:20:57 has no hits.

BS15625.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:13 Download gff for BS15625.5prime
Subject Subject Range Query Range Percent Splice Strand
TER94-PA 1507..2369 11..873 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:36 Download gff for BS15625.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2331-PA 1507..2369 11..873 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 13:14:45 Download gff for BS15625.5prime
Subject Subject Range Query Range Percent Splice Strand
TER94-RA 1635..2497 11..873 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:32:50 Download gff for BS15625.5prime
Subject Subject Range Query Range Percent Splice Strand
TER94-RA 1635..2497 11..873 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:32:50 Download gff for BS15625.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9992046..9992696 11..661 99 -> Plus
2R 9992763..9992917 662..816 100 -> Plus
2R 9992984..9993040 817..873 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 13:14:45 Download gff for BS15625.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5879551..5880201 11..661 99 -> Plus
arm_2R 5880268..5880422 662..816 100 -> Plus
arm_2R 5880489..5880545 817..873 93   Plus

BS15625.complete Sequence

926 bp assembled on 2008-08-14

GenBank Submission: KX802516

> BS15625.complete
GAAGTTATCCTTCGACATGCAGCCCAGTCGCGGTGTCCTTTTCTACGGAC
CCCCTGGTTGCGGTAAGACGCTGCTGGCCAAGGCCATTGCCAACGAGTGC
CAGGCGAACTTCATCTCAGTCAAGGGTCCCGAACTGCTGACCATGTGGTT
CGGCGAGTCTGAGGCCAACGTGCGCGACATCTTCGATAAGGCCCGCTCGG
CGGCTCCTTGTGTGCTCTTCTTCGACGAGCTGGACTCGATCGCCAAAGCC
CGTGGCGGTAATGTCGGCGATGCTGGCGGCGCCGCTGATCGTGTGATCAA
TCAGATCCTTACCGAAATGGATGGCATGGGAGCCAAGAAGAATGTGTTCA
TCATCGGAGCCACCAATCGCCCGGACATTATCGATCCGGCCATCCTCCGT
CCGGGCCGTCTGGATCAGTTGATCTATATTCCGCTGCCCGACGACAAATC
GCGTGAGGCTATCCTGAAGGCTAACTTGCGCAAGTCGCCGCTGGCCAAGG
AAGTAGACCTTACCTACATCGCCAAGGTGACGCAGGGCTTCTCTGGCGCC
GATCTGACCGAGATCTGCCAGCGGGCTTGCAAGCTGGCCATCCGACAGGC
CATCGAGGCTGAAATTCGTCGCGAGAAGGAGCGCGCCGAAAATCAGAACT
CCGCGATGGACATGGACGAGGACGATCCAGTGCCGGAGATTACTAGCGCC
CACTTCGAGGAGGCCATGAAGTTCGCTCGCCGTTCGGTGTCCGATAATGA
CATCAGGAAGTACGAGATGTTTGCCCAGACTTTGCAGCAGTCCCGTGGAT
TCGGACAGAACTTCAGATTCCCCGGTCAAACCGGCAACACCTCAGGATCT
GGTAACAACTTGCCAGTTAACTCGCCCGGCGACAACGGCGACGATGATCT
TTACAGTTAGAAGCTTTCTAGACCAT

BS15625.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:33:45
Subject Length Description Subject Range Query Range Score Percent Strand
TER94-RD 2280 CG2331-PD 1386..2280 16..910 4475 100 Plus
TER94-RC 2481 CG2331-PC 1587..2481 16..910 4475 100 Plus
TER94-RA 2406 CG2331-PA 1512..2406 16..910 4475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
TER94-RD 3125 CG2331-RD 1749..2644 16..911 4480 100 Plus
TER94-RC 3058 CG2331-RC 1682..2577 16..911 4480 100 Plus
TER94-RA 3016 CG2331-RA 1640..2535 16..911 4480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9992051..9992696 16..661 3230 100 Plus
2R 25286936 2R 9992763..9992917 662..816 775 100 Plus
2R 25286936 2R 9992981..9993078 814..911 490 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:33:43 has no hits.

BS15625.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:50:40 Download gff for BS15625.complete
Subject Subject Range Query Range Percent Splice Strand
TER94-RC 1582..2489 11..921 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:54:42 Download gff for BS15625.complete
Subject Subject Range Query Range Percent Splice Strand
TER94-RA 1641..2534 17..910 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:52 Download gff for BS15625.complete
Subject Subject Range Query Range Percent Splice Strand
TER94-RC 1588..2481 17..910 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:38 Download gff for BS15625.complete
Subject Subject Range Query Range Percent Splice Strand
TER94-RA 1641..2534 17..910 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:38 Download gff for BS15625.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9992052..9992696 17..661 100 -> Plus
2R 9992763..9992917 662..816 100 -> Plus
2R 9992984..9993077 817..910 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:42 Download gff for BS15625.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5879557..5880201 17..661 100 -> Plus
arm_2R 5880268..5880422 662..816 100 -> Plus
arm_2R 5880489..5880582 817..910 100   Plus

BS15625.pep Sequence

Translation from 16 to 909

> BS15625.pep
MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEA
NVRDIFDKARSAAPCVLFFDELDSIAKARGGNVGDAGGAADRVINQILTE
MDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDDKSREAIL
KANLRKSPLAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEI
RREKERAENQNSAMDMDEDDPVPEITSAHFEEAMKFARRSVSDNDIRKYE
MFAQTLQQSRGFGQNFRFPGQTGNTSGSGNNLPVNSPGDNGDDDLYS*

BS15625.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
TER94-PD 759 CG2331-PD 463..759 1..297 1534 100 Plus
TER94-PA 801 CG2331-PA 505..801 1..297 1534 100 Plus
TER94-PC 826 CG2331-PC 530..826 1..297 1534 100 Plus
TER94-PE 825 CG2331-PE 530..825 1..297 1517 99.7 Plus
smid-PI 910 CG8571-PI 664..893 6..250 568 48.4 Plus
TER94-PD 759 CG2331-PD 190..383 1..197 412 41.6 Plus
TER94-PA 801 CG2331-PA 232..425 1..197 412 41.6 Plus
TER94-PC 826 CG2331-PC 257..450 1..197 412 41.6 Plus
TER94-PE 825 CG2331-PE 257..450 1..197 412 41.6 Plus