Clone Sequence Records
BS15626.3prime Sequence
908 bp (837 high quality bases) assembled on 2006-12-21
> BS15626.3prime
TCCCTTAAGGGGCGCGCCAAACGAATGGTCTAGAAAGCTTCTACCTTTTA
GGGAACTGTCGCTAGCTGAGGAGCAGTGCGAGCAATTAAGCTCCATATTT
TTCATAGCTTCTCTCAGCTCTTCCTTCTCGTTCATCTCCTCGCGCAGTTT
CTGCTGCAAACTGAGAATGAGATCGTTTTTATTTCGAATCTGCAGCTTCA
GATGCTCAATTGTCTCCTCCTGAGCTTCGAAAATTGCACGACACTCCTCC
ATGGATTCAGAGTACGAAGGCGGCTCGTCCAGGCAGAAGAACTCCCGAAC
CAGTTTGCACTTTCGCAGCTCCTCCTTGGCCATCACTGAGTTGACGAAGA
TCTGCAGACCTTGCACCCGATTGTCGAGAAAGACGGCATTGAAGTTATCG
CCGAAAAGCTTCTTCCGGGGCAGCATGAGCGTAAGGTTGGGAAAAGCCTG
CTTTAGCTTGCTATTGAGCCGCACGAAGTCGGTGTAGCGTCGCATAACAA
GCCAATAGTCGTTGGTCTCCGGATTCTCGACTCGCAGCTTGTAGGCAGTG
AAACGCGCACGTTCCTCCATAACCTCGTAACCAATAATGGGCACCCTTAG
CACAGCGTTGGGGTCCACGGGCGGCACCACCGATCCCGAGGAGAGAGTCA
TCTGGCTGGCGAACATAGAGTTGGAGCCAGTGTGCCGGGAGCTGGATTGG
CTGTAGCCCAAGCTGCACTCGCTCATCCGCCGAGGAGTTCTAGACCTGGA
TTCCAAATCCACGGAATGTCCACCTGCCTGGTTGCCATAGGACGACTGCG
TCAGGTCGCGATGGGAACGTGCACCGCCGAGCATTTCGCTTTTGTTTATC
GGCGTTCTCGGAGATTGTTCGTAACTGTGAGAGCTAATCCTTTGCAGGCA
AACCTCTG
BS15626.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6410-PA | 1224 | CG6410-RA | 356..1210 | 908..54 | 4225 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 03:13:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snx16-RA | 1699 | CG6410-RA | 479..1333 | 908..54 | 4245 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 03:13:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17725698..17726369 | 237..908 | 3360 | 100 | Plus |
| 2R | 25286936 | 2R | 17725502..17725638 | 101..237 | 655 | 98.5 | Plus |
| 2R | 25286936 | 2R | 17725396..17725442 | 54..100 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 03:13:19 has no hits.
BS15626.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:15 Download gff for
BS15626.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6410-PA | 356..1210 | 54..908 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:37 Download gff for
BS15626.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6410-PA | 356..1210 | 54..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:30:13 Download gff for
BS15626.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snx16-RA | 479..1333 | 54..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:08:56 Download gff for
BS15626.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snx16-RA | 479..1333 | 54..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:08:56 Download gff for
BS15626.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17725502..17725638 | 101..237 | 98 | <- | Plus |
| 2R | 17725699..17726369 | 238..908 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:30:13 Download gff for
BS15626.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13613007..13613143 | 101..237 | 98 | <- | Plus |
| arm_2R | 13613204..13613874 | 238..908 | 100 | | Plus |
BS15626.5prime Sequence
903 bp (837 high quality bases) assembled on 2006-12-21
> BS15626.5prime
GAAGTTATCCTTTGACATGTCACTGCGTGCGCTTCGGAAAAGAGAAACAG
GCACTGGCTACGGCAACAATAACAACCATTTAGCATCACCAGCAAGAACT
TCACAAGCAACGCTCTTTAAGAAGGCCAGCACAGCAATAACGTCACCGAA
GAAATCGTTGCTCAAAACTGGGAACTCCGTCTGCGGATTGGACAAACGGA
GCCAGTTCCGGGAGCAGAAGCTACTCGGTCGCAAGTGCCACTCGAGTCCT
GACCTACGACAAATCGGAAAATACCAAAACAACAGCCTGTTGCGCAGCAA
ATCGGAGGGGGATGTTAGTTTAATCCTGGCCAGTAACTCCGGTGCTCCAT
TGACGGTGGCAAACGCCAAGTCAGAGGTTTGCCTGCAAAGGATTAGCTCT
CACAGTTACGAACAATCTCCGAGAACGCCGATAAACAAAAGCGAAATGCT
CGGCGGTGCACGTTCCCATCGCGACCTGACGCAGTCGTCCTATGGCAACC
AGGCAGGTGGACATTCCGTGGATTTGGAATCCAGGTCTAGAACTCCTCGG
CGGATGAGCGAGTGCAGCTTGGGCTACAGCCAATCCAGCTCCCGGCACAC
TGGCTCCAACTCTATGTTCGCCAGCCAGATGACTCTCTCCTCGGGATCGG
TGGTGCCGCCCGTGGACCCCAACGCTGTGCTAAGGGTGCCCATTATTGGT
TACGAGGTTATGGAGGAACGTGCGCGTTTCACTGCCTACAAGCTGCGAGT
CGAGAATCCGGAGACCAACGACTATTGGCTTGTTATGCGACGCTACACCG
ACTTCGTGCGGCTCAATAGCAAGCTAAAGCAGGCTTTTCCCACCTTACGC
TCATGCTGCCCCGGAAGAAGCTTTTCGGCGATAACTTCAATGCCGTCTTT
CTC
BS15626.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6410-PA | 1224 | CG6410-RA | 1..826 | 17..842 | 4080 | 99.7 | Plus |
| CG6410-PA | 1224 | CG6410-RA | 827..888 | 842..903 | 310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snx16-RA | 1699 | CG6410-RA | 124..1011 | 17..903 | 4385 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17725837..17726724 | 903..17 | 4360 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:25:14 has no hits.
BS15626.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:16 Download gff for
BS15626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6410-PA | 1..888 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:38 Download gff for
BS15626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6410-PA | 1..888 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 13:01:52 Download gff for
BS15626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snx16-RA | 124..1011 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:49:18 Download gff for
BS15626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snx16-RA | 124..1011 | 17..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:49:18 Download gff for
BS15626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17725837..17726724 | 17..903 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 13:01:52 Download gff for
BS15626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13613342..13614229 | 17..903 | 99 | | Minus |
BS15626.complete Sequence
1280 bp assembled on 2009-08-24
GenBank Submission: KX800988
> BS15626.complete
GAAGTTATCAGTCGACATGTCACTGCGTGCGCTTCGGAAAAGAGAAACAG
GCACTGGCTACGGCAACAATAACAACCATTTAGCAGCACCAGCAAGAACT
TCACAAGCAACGCTCTTTAAGAAGGCCAGCACAGCAATAACGTCACCGAA
GAAATCGTTGCTCAAAACTGGGAACTCCGTCTGCGGATTGGACAAACGGA
GCCAGTTCCGGGAGCAGAAGCTACTCGGTCGCAAGTGCCACTCGAGTCCT
GACCTACGACAAATCGGAAAATACCAAAACAACAGCCTGTTGCGCAGCAA
ATCGGAGGGGGATGTTAGTTTAATCCTGGCCAGTAACTCCGGTGCTCCAT
TGACGGTGGCAAACGCCAAGTCAGAGGTTTGCCTGCAAAGGATTAGCTCT
CACAGTTACGAACAATCTCCGAGAACGCCGATAAACAAAAGCGAAATGCT
CGGCGGTGCACGTTCCCATCGCGACCTGACGCAGTCGTCCTATGGCAACC
AGGCAGGTGGACATTCCGTGGATTTGGAATCCAGGTCTAGAACTCCTCGG
CGGATGAGCGAGTGCAGCTTGGGCTACAGCCAATCCAGCTCCCGGCACAC
TGGCTCCAACTCTATGTTCGCCAGCCAGATGACTCTCTCCTCGGGATCGG
TGGTGCCGCCCGTGGACCCCAACGCTGTGCTAAGGGTGCCCATTATTGGT
TACGAGGTTATGGAGGAACGTGCGCGTTTCACTGCCTACAAGCTGCGAGT
CGAGAATCCGGAGACCAACGACTATTGGCTTGTTATGCGACGCTACACCG
ACTTCGTGCGGCTCAATAGCAAGCTAAAGCAGGCTTTTCCCAACCTTACG
CTCATGCTGCCCCGGAAGAAGCTTTTCGGCGATAACTTCAATGCCGTCTT
TCTCGACAATCGGGTGCAAGGTCTGCAGATCTTCGTCAACTCAGTGATGG
CCAAGGAGGAGCTGCGAAAGTGCAAACTGGTTCGGGAGTTCTTCTGCCTG
GACGAGCCGCCTTCGTACTCTGAATCCATGGAGGAGTGTCGTGCAATTTT
CGAAGCTCAGGAGGAGACAATTGAGCATCTGAAGCTGCAGATTCGAAATA
AAAACGATCTCATTCTCAGTTTGCAGCAGAAACTGCGCGAGGAGATGAAC
GAGAAGGAGCAGCTGAGAGAAGCTATGAAAAATATGGAGCTTAATTGCTC
GCACTGCTCCTCAGCTAGCGACAGTTTGGGAATAAAGTAGAAGCTTTCTA
GACCATTCGTTTGGCGCGCCCCTTAAGGGA
BS15626.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:36:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snx16-RA | 1224 | CG6410-PA | 1..1224 | 17..1240 | 6105 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snx16-RA | 1699 | CG6410-RA | 124..1348 | 17..1241 | 6110 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17725698..17726724 | 1043..17 | 5120 | 99.9 | Minus |
| 2R | 25286936 | 2R | 17725502..17725638 | 1179..1043 | 685 | 100 | Minus |
| 2R | 25286936 | 2R | 17725381..17725442 | 1241..1180 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:36:03 has no hits.
BS15626.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:37 Download gff for
BS15626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6410-RA | 77..1305 | 17..1246 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:21 Download gff for
BS15626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snx16-RA | 124..1352 | 17..1246 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:27 Download gff for
BS15626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snx16-RA | 124..1352 | 17..1246 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:27 Download gff for
BS15626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17725377..17725442 | 1180..1246 | 97 | <- | Minus |
| 2R | 17725502..17725638 | 1043..1179 | 100 | <- | Minus |
| 2R | 17725699..17726724 | 17..1042 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:21 Download gff for
BS15626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13612882..13612947 | 1180..1246 | 97 | <- | Minus |
| arm_2R | 13613007..13613143 | 1043..1179 | 100 | <- | Minus |
| arm_2R | 13613204..13614229 | 17..1042 | 99 | | Minus |
BS15626.pep Sequence
Translation from 16 to 1239
> BS15626.pep
MSLRALRKRETGTGYGNNNNHLAAPARTSQATLFKKASTAITSPKKSLLK
TGNSVCGLDKRSQFREQKLLGRKCHSSPDLRQIGKYQNNSLLRSKSEGDV
SLILASNSGAPLTVANAKSEVCLQRISSHSYEQSPRTPINKSEMLGGARS
HRDLTQSSYGNQAGGHSVDLESRSRTPRRMSECSLGYSQSSSRHTGSNSM
FASQMTLSSGSVVPPVDPNAVLRVPIIGYEVMEERARFTAYKLRVENPET
NDYWLVMRRYTDFVRLNSKLKQAFPNLTLMLPRKKLFGDNFNAVFLDNRV
QGLQIFVNSVMAKEELRKCKLVREFFCLDEPPSYSESMEECRAIFEAQEE
TIEHLKLQIRNKNDLILSLQQKLREEMNEKEQLREAMKNMELNCSHCSSA
SDSLGIK*
BS15626.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:34:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snx16-PA | 407 | CG6410-PA | 1..407 | 1..407 | 2076 | 100 | Plus |
| CG8726-PB | 646 | CG8726-PB | 13..130 | 215..340 | 159 | 35.4 | Plus |
