Clone BS15628 Report

Search the DGRC for BS15628

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:156
Well:28
Vector:pDNR-Dual
Associated Gene/Transcriptpio-RB
Protein status:BS15628.pep: full length peptide match
Sequenced Size:1421

Clone Sequence Records

BS15628.complete Sequence

1421 bp assembled on 2009-12-07

GenBank Submission: KX800876

> BS15628.complete
GAAGTTATCAGTCGACATGAAGACAGGCACTCGAATGGACGCTTTCCACA
CGGCGCTGCACTTAATCACAATCGCAGCTCTGACGACGCACGCGGCGCAG
ATTCCAACGGCAATGAAAGATGCCCAGAGCTCGCTGAGCGATGCGATTGC
GGCGGCGGAGGCGGAGGTGGCCTCCACCTCTAAGCCGGCGGTGGAGCCGA
GTGTGCGGATCAAGTGCCTCTCCGGATCGATGCTGATCACCATTAAAGAC
GCTCCTCCGAACCACGAAACGGGCCTGTTCAGCGGCATGATCTACCCGAA
AGGCCTGTCCAAGAACTCCACCTGCTTGAGCGAGTACAGAGATCATGTGG
GCTCCCTGCGATATAAGCTGCCCCTGAGATCTTGCAACACGATGCCGAAG
GAAACGGATGACGGTGGCATTGAGTTCTTCAACACCATCGTGCTGCAGCC
CCACCTAAAGCTCATCACGGACCTGGGACGTGGCTACCACGTCCGCTGTG
CGTACAAGAGTCGGGACGCAGCCATGAAGCCCAAAAAGTACCTGCGCAAG
CACGCCCAGAAGCCACAGGCCTTCCGCAGCGATGATCGGCGGGAGTACGG
ACGATCGCTGGACAAGCAGCAGGACGACGACCTGGACGAGGAGGATGTCT
ACGATGCGAATGCCCCGACGCAGGAGGAGGACGTGACCAACAACGAGATC
CCCATGCCAGGCTGCCACATGAAGATCTACAACGACGAGCACAAAATTGC
CGACGATGTGAAGATCGGTGATCCTCTGACCATTGTCATCAGCATCGATA
AGCAGAAGGTTTACGGACTCCATGTCACGGACTGCATAGTTCGCGATGGT
CTGGGCTGGGGAGAGCAGCGACTGGTGGGCGAAGATGGCTGCCCCATGGA
CAACGAGATCATGGGTCAGTTCAACTACACCCAAGACCGATTGGCAGCCA
ACGTGACCTTTCCGGCGCACAAGTTCCCCTACACCACCTCCGTGTACTAC
CAGTGCAACGTGCGACTGTGCGCCCTGGAGGACCCCACCTGCCAGGAGGC
TCCCCAGTGCAGCGGCAAGAGGCCCAAGCGCCAAGCCGCCGCGGACAGCA
AGGAGGAGGACGGTCTGCCCGCCACCATTGAGGTCTTCTCTGGCCTATAT
GTGAATGAGAACGAAAACGCCAACGACAGCGACGAGGACGCGGTTTACAA
GGAGAAGACTCTGGACGACGCCCTGTGCGTTTCGCAACGCACCTTCGCCA
TAGCCATTGCCATCGCCGGATTGATCCTTATGCTAGCCGTGGTCGCCGCC
GTTCTCTGCATCATGGCGCGCAGGAGCACCAAGACGGTGTCCAACTCTGG
CAGCTCCATCTACAGTGGACCCTACACGAACACCGCCTTCTCGCACAGCA
GCTAAAAGCTTTCTAGACCAT

BS15628.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
pio-RE 1389 CG3541-PE 1..1389 17..1405 6945 100 Plus
pio-RD 1389 CG3541-PD 1..1389 17..1405 6945 100 Plus
pio-RB 1389 CG3541-PB 1..1389 17..1405 6945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
pio-RE 2374 CG3541-RE 88..1477 16..1405 6950 100 Plus
pio-RD 3128 CG3541-RD 842..2231 16..1405 6950 100 Plus
pio-RB 2656 CG3541-RB 370..1759 16..1405 6950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24595857..24596339 406..888 2415 100 Plus
2R 25286936 2R 24596395..24596714 888..1207 1600 100 Plus
2R 25286936 2R 24591952..24592174 117..339 1115 100 Plus
2R 25286936 2R 24596766..24596965 1206..1405 1000 100 Plus
2R 25286936 2R 24592230..24592300 337..407 355 100 Plus
2R 25286936 2R 24588754..24588805 16..67 260 100 Plus
2R 25286936 2R 24589377..24589425 68..116 245 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:27:56 has no hits.

BS15628.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:19 Download gff for BS15628.complete
Subject Subject Range Query Range Percent Splice Strand
pio-RB 344..1730 17..1403 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:49 Download gff for BS15628.complete
Subject Subject Range Query Range Percent Splice Strand
pio-RB 371..1757 17..1403 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:03:12 Download gff for BS15628.complete
Subject Subject Range Query Range Percent Splice Strand
pio-RB 344..1730 17..1403 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:00 Download gff for BS15628.complete
Subject Subject Range Query Range Percent Splice Strand
pio-RB 371..1757 17..1403 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:00 Download gff for BS15628.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24591952..24592174 117..339 100 -> Plus
2R 24592233..24592299 340..406 100 -> Plus
2R 24589377..24589425 68..116 100 -> Plus
2R 24588755..24588805 17..67 100 -> Plus
2R 24595858..24596339 407..888 100 -> Plus
2R 24596396..24596714 889..1207 100 -> Plus
2R 24596768..24596963 1208..1403 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:49 Download gff for BS15628.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20483919..20484237 889..1207 100 -> Plus
arm_2R 20484291..20484486 1208..1403 100   Plus
arm_2R 20476278..20476328 17..67 100 -> Plus
arm_2R 20476900..20476948 68..116 100 -> Plus
arm_2R 20479475..20479697 117..339 100 -> Plus
arm_2R 20479756..20479822 340..406 100 -> Plus
arm_2R 20483381..20483862 407..888 100 -> Plus

BS15628.3prime Sequence

918 bp (897 high quality bases) assembled on 2006-12-21

> BS15628.3prime
TCCCTTAAAGGGCGCGCCAAACGAATGGTCTAGAAAGCTTTTACCTTCTG
TGCGAGAAGGCGGTGTTCGTGTAGGGTCCACTGTAGATGGAGCTGCCAGA
GTTGGACACCGTCTTGGTGCTCCTGCGCGCCATGATGCAGAGAACGGCGG
CGACCACGGCTAGCATAAGGATCAATCCGGCGATGGCAATGGCTATGGCG
AAGGTGCGTTGCGAAACGCACAGGGCGTCGTCCAGAGTCTTCTCCTTGTA
AACCGCGTCCTCGTCGCTGTCGTTGGCGTTTTCGTTCTCATTCACATATA
GGCCAGAGAAGACCTCAATGGTGGCGGGCAGACCGTCCTCCTCCTTGCTG
TCCGCGGCGGCTTGGCGCTTGGGCCTCTTGCCGCTGCACTGGGGAGCCTC
CTGGCAGGTGGGGTCCTCCAGGGCGCACAGTCGCACGTTGCACTGGTAGT
ACACGGAGGTGGTGTAGGGGAACTTGTGCGCCGGAAAGGTCACGTTGGCT
GCCAATCGGTCTTGGGTGTAGTTGAACTGACCCATGATCTCGTTGTCCAT
GGGGCAGCCATCTTCGCCCACCAGTCGCTGCTCTCCCCAGCCCAGACCAT
CGCGAACTATGCAGTCCGTGACATGGAGTCCGTAAACCTTCTGCTTATCG
ATGCTGATGACAATGGTCAGAGGATCACCGATCTTCACATCGTCGGCAAT
TTTGTGCTCGTCGTTGTAGATCTTCATGTGGCAGCCTGGCATGGGGATCT
CGTTGTTGGTCACGTCCTCCTCCTGCGTCGGGGCATTCGCATCGTAGACA
TCCTCCTCGTCCAGGTCGTCGTCCTGCTGCTTGTCCAGCGATCGTCCGTA
CTCCCGCCGATCATCGCTGCGGAAGGCCTGTGGCTTCTGGGCGTGCTTGC
GCATGTACTTTTTGGGCT

BS15628.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3541-PB 1389 pio-RB 512..1382 918..48 4330 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
pio-RE 2374 CG3541-RE 600..1477 918..41 4345 99.7 Minus
pio-RD 3128 CG3541-RD 1354..2231 918..41 4345 99.7 Minus
pio-RB 2656 CG3541-RB 882..1759 918..41 4345 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:15:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24595979..24596339 918..558 1790 99.7 Minus
2R 25286936 2R 24596395..24596714 558..239 1600 100 Minus
2R 25286936 2R 24596766..24596965 240..41 970 99 Minus
Blast to na_te.dros performed on 2015-02-10 15:15:55 has no hits.

BS15628.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:19 Download gff for BS15628.3prime
Subject Subject Range Query Range Percent Splice Strand
pio-PB 512..1389 41..918 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:43 Download gff for BS15628.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3541-PB 512..1389 41..918 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:26:48 Download gff for BS15628.3prime
Subject Subject Range Query Range Percent Splice Strand
pio-RB 882..1761 37..918 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:51:00 Download gff for BS15628.3prime
Subject Subject Range Query Range Percent Splice Strand
pio-RB 882..1761 37..918 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:51:00 Download gff for BS15628.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24595979..24596339 558..918 99 -> Minus
2R 24596396..24596714 239..557 100 -> Minus
2R 24596768..24596967 37..238 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:26:48 Download gff for BS15628.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20483502..20483862 558..918 99 -> Minus
arm_2R 20483919..20484237 239..557 100 -> Minus
arm_2R 20484291..20484490 37..238 98   Minus

BS15628.5prime Sequence

916 bp (803 high quality bases) assembled on 2006-12-21

> BS15628.5prime
GAAGTTATCCGTCGACATGAAGACAGGCACTCGAATGGACGCTTTCCACA
CGGCGCTGCACTTAATCACAATCGCAGCTCTGACGACGCACGCGGCGCAG
ATTCCAACGGCAATGAAAGATGCCCAGAGCTCGCTGAGCGATGCGATTGC
GGCGGCGGAGGCGGAGGTGGCCTCCACCTCTAAGCCGGCGGTGGAGCCGA
GTGTGCGGATCAAGTGCCTCTCCGGATCGATGCTGATCACCATTAAAGAC
GCTCCTCCGAACCACGAAACGGGCCTGTTCAGCGGCATGATCTACCCGAA
AGGCCTGTCCAAGAACTCCACCTGCTTGAGCGAGTACAGAGATCATGTGG
GCTCCCTGCGATATAAGCTGCCCCTGAGATCTTGCAACACGATGCCGAAG
GAAACGGATGACGGTGGCATTGAGTTCTTCAACACCATCGTGCTGCAGCC
CCACCTAAAGCTCATCACGGACCTGGGACGTGGCTACCACGTCCGCTGTG
CGTACAAGAGTCGGGACGCAGCCATGAAGCCCAAAAAGTACCTGCGCAAG
CACGCCCAGAAGCCACAGGCCTTCCGCAGCGATGATCGGCGGGAGTACGG
ACGATCGCTGGACAAGCAGCAGGACGACGACCTGGACGAGGAGGATGTCT
ACGATGCGAATGCCCCGACGCAGGAGGAGGACGTGACCAACAACGAGATC
CCCATGCCAGGCTGCCACATGAAGATCTACAACGACGAGCACAAAATTGC
CGACGATGTGAAGATCGGTGATCCTCTGACCATTGTCATCAGCATCGATA
AGCAGAAGGTTTACGGACTCCATGTCACGGACTGCATAGTTCGCGATGGT
CTGGGCTGGGGAGAGCAGCGACTGGTGGGCGAAGATGGCTGCCCCATGGA
CAACGAGATCATGGGT

BS15628.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3541-PB 1389 pio-RB 1..900 17..916 4500 100 Plus
CG3541-PC 471 pio-RC 1..391 17..407 1955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
pio-RE 2374 CG3541-RE 88..988 16..916 4505 100 Plus
pio-RD 3128 CG3541-RD 842..1742 16..916 4505 100 Plus
pio-RB 2656 CG3541-RB 370..1270 16..916 4505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:28:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24595857..24596339 406..888 2415 100 Plus
2R 25286936 2R 24591952..24592174 117..339 1115 100 Plus
2R 25286936 2R 24592230..24592300 337..407 355 100 Plus
2R 25286936 2R 24588754..24588805 16..67 260 100 Plus
2R 25286936 2R 24589377..24589425 68..116 245 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:28:59 has no hits.

BS15628.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:20 Download gff for BS15628.5prime
Subject Subject Range Query Range Percent Splice Strand
pio-PB 1..900 17..916 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:45 Download gff for BS15628.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3541-PB 1..900 17..916 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 18:35:37 Download gff for BS15628.5prime
Subject Subject Range Query Range Percent Splice Strand
pio-RB 364..1270 12..916 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:47 Download gff for BS15628.5prime
Subject Subject Range Query Range Percent Splice Strand
pio-RB 364..1270 12..916 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:47 Download gff for BS15628.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24588748..24588805 12..67 96 -> Plus
2R 24589377..24589425 68..116 100 -> Plus
2R 24591952..24592174 117..339 100 -> Plus
2R 24592233..24592299 340..406 100 -> Plus
2R 24595858..24596339 407..888 100 -> Plus
2R 24596396..24596423 889..916 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 18:35:37 Download gff for BS15628.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20476271..20476328 12..67 96 -> Plus
arm_2R 20476900..20476948 68..116 100 -> Plus
arm_2R 20479475..20479697 117..339 100 -> Plus
arm_2R 20479756..20479822 340..406 100 -> Plus
arm_2R 20483381..20483862 407..888 100 -> Plus
arm_2R 20483919..20483946 889..916 100   Plus

BS15628.pep Sequence

Translation from 16 to 1404

> BS15628.pep
MKTGTRMDAFHTALHLITIAALTTHAAQIPTAMKDAQSSLSDAIAAAEAE
VASTSKPAVEPSVRIKCLSGSMLITIKDAPPNHETGLFSGMIYPKGLSKN
STCLSEYRDHVGSLRYKLPLRSCNTMPKETDDGGIEFFNTIVLQPHLKLI
TDLGRGYHVRCAYKSRDAAMKPKKYLRKHAQKPQAFRSDDRREYGRSLDK
QQDDDLDEEDVYDANAPTQEEDVTNNEIPMPGCHMKIYNDEHKIADDVKI
GDPLTIVISIDKQKVYGLHVTDCIVRDGLGWGEQRLVGEDGCPMDNEIMG
QFNYTQDRLAANVTFPAHKFPYTTSVYYQCNVRLCALEDPTCQEAPQCSG
KRPKRQAAADSKEEDGLPATIEVFSGLYVNENENANDSDEDAVYKEKTLD
DALCVSQRTFAIAIAIAGLILMLAVVAAVLCIMARRSTKTVSNSGSSIYS
GPYTNTAFSHSS*

BS15628.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
pio-PE 462 CG3541-PE 1..462 1..462 2417 100 Plus
pio-PD 462 CG3541-PD 1..462 1..462 2417 100 Plus
pio-PB 462 CG3541-PB 1..462 1..462 2417 100 Plus
pio-PC 156 CG3541-PC 1..130 1..130 661 100 Plus
dp-PM 8579 CG33196-PM 8200..8551 61..442 229 23.7 Plus