Clone Sequence Records
BS15628.complete Sequence
1421 bp assembled on 2009-12-07
GenBank Submission: KX800876
> BS15628.complete
GAAGTTATCAGTCGACATGAAGACAGGCACTCGAATGGACGCTTTCCACA
CGGCGCTGCACTTAATCACAATCGCAGCTCTGACGACGCACGCGGCGCAG
ATTCCAACGGCAATGAAAGATGCCCAGAGCTCGCTGAGCGATGCGATTGC
GGCGGCGGAGGCGGAGGTGGCCTCCACCTCTAAGCCGGCGGTGGAGCCGA
GTGTGCGGATCAAGTGCCTCTCCGGATCGATGCTGATCACCATTAAAGAC
GCTCCTCCGAACCACGAAACGGGCCTGTTCAGCGGCATGATCTACCCGAA
AGGCCTGTCCAAGAACTCCACCTGCTTGAGCGAGTACAGAGATCATGTGG
GCTCCCTGCGATATAAGCTGCCCCTGAGATCTTGCAACACGATGCCGAAG
GAAACGGATGACGGTGGCATTGAGTTCTTCAACACCATCGTGCTGCAGCC
CCACCTAAAGCTCATCACGGACCTGGGACGTGGCTACCACGTCCGCTGTG
CGTACAAGAGTCGGGACGCAGCCATGAAGCCCAAAAAGTACCTGCGCAAG
CACGCCCAGAAGCCACAGGCCTTCCGCAGCGATGATCGGCGGGAGTACGG
ACGATCGCTGGACAAGCAGCAGGACGACGACCTGGACGAGGAGGATGTCT
ACGATGCGAATGCCCCGACGCAGGAGGAGGACGTGACCAACAACGAGATC
CCCATGCCAGGCTGCCACATGAAGATCTACAACGACGAGCACAAAATTGC
CGACGATGTGAAGATCGGTGATCCTCTGACCATTGTCATCAGCATCGATA
AGCAGAAGGTTTACGGACTCCATGTCACGGACTGCATAGTTCGCGATGGT
CTGGGCTGGGGAGAGCAGCGACTGGTGGGCGAAGATGGCTGCCCCATGGA
CAACGAGATCATGGGTCAGTTCAACTACACCCAAGACCGATTGGCAGCCA
ACGTGACCTTTCCGGCGCACAAGTTCCCCTACACCACCTCCGTGTACTAC
CAGTGCAACGTGCGACTGTGCGCCCTGGAGGACCCCACCTGCCAGGAGGC
TCCCCAGTGCAGCGGCAAGAGGCCCAAGCGCCAAGCCGCCGCGGACAGCA
AGGAGGAGGACGGTCTGCCCGCCACCATTGAGGTCTTCTCTGGCCTATAT
GTGAATGAGAACGAAAACGCCAACGACAGCGACGAGGACGCGGTTTACAA
GGAGAAGACTCTGGACGACGCCCTGTGCGTTTCGCAACGCACCTTCGCCA
TAGCCATTGCCATCGCCGGATTGATCCTTATGCTAGCCGTGGTCGCCGCC
GTTCTCTGCATCATGGCGCGCAGGAGCACCAAGACGGTGTCCAACTCTGG
CAGCTCCATCTACAGTGGACCCTACACGAACACCGCCTTCTCGCACAGCA
GCTAAAAGCTTTCTAGACCAT
BS15628.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:27:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pio-RE | 1389 | CG3541-PE | 1..1389 | 17..1405 | 6945 | 100 | Plus |
pio-RD | 1389 | CG3541-PD | 1..1389 | 17..1405 | 6945 | 100 | Plus |
pio-RB | 1389 | CG3541-PB | 1..1389 | 17..1405 | 6945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:27:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pio-RE | 2374 | CG3541-RE | 88..1477 | 16..1405 | 6950 | 100 | Plus |
pio-RD | 3128 | CG3541-RD | 842..2231 | 16..1405 | 6950 | 100 | Plus |
pio-RB | 2656 | CG3541-RB | 370..1759 | 16..1405 | 6950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:27:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24595857..24596339 | 406..888 | 2415 | 100 | Plus |
2R | 25286936 | 2R | 24596395..24596714 | 888..1207 | 1600 | 100 | Plus |
2R | 25286936 | 2R | 24591952..24592174 | 117..339 | 1115 | 100 | Plus |
2R | 25286936 | 2R | 24596766..24596965 | 1206..1405 | 1000 | 100 | Plus |
2R | 25286936 | 2R | 24592230..24592300 | 337..407 | 355 | 100 | Plus |
2R | 25286936 | 2R | 24588754..24588805 | 16..67 | 260 | 100 | Plus |
2R | 25286936 | 2R | 24589377..24589425 | 68..116 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:27:56 has no hits.
BS15628.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:19 Download gff for
BS15628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pio-RB | 344..1730 | 17..1403 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:49 Download gff for
BS15628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pio-RB | 371..1757 | 17..1403 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:03:12 Download gff for
BS15628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pio-RB | 344..1730 | 17..1403 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:00 Download gff for
BS15628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pio-RB | 371..1757 | 17..1403 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:00 Download gff for
BS15628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24591952..24592174 | 117..339 | 100 | -> | Plus |
2R | 24592233..24592299 | 340..406 | 100 | -> | Plus |
2R | 24589377..24589425 | 68..116 | 100 | -> | Plus |
2R | 24588755..24588805 | 17..67 | 100 | -> | Plus |
2R | 24595858..24596339 | 407..888 | 100 | -> | Plus |
2R | 24596396..24596714 | 889..1207 | 100 | -> | Plus |
2R | 24596768..24596963 | 1208..1403 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:49 Download gff for
BS15628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20483919..20484237 | 889..1207 | 100 | -> | Plus |
arm_2R | 20484291..20484486 | 1208..1403 | 100 | | Plus |
arm_2R | 20476278..20476328 | 17..67 | 100 | -> | Plus |
arm_2R | 20476900..20476948 | 68..116 | 100 | -> | Plus |
arm_2R | 20479475..20479697 | 117..339 | 100 | -> | Plus |
arm_2R | 20479756..20479822 | 340..406 | 100 | -> | Plus |
arm_2R | 20483381..20483862 | 407..888 | 100 | -> | Plus |
BS15628.3prime Sequence
918 bp (897 high quality bases) assembled on 2006-12-21
> BS15628.3prime
TCCCTTAAAGGGCGCGCCAAACGAATGGTCTAGAAAGCTTTTACCTTCTG
TGCGAGAAGGCGGTGTTCGTGTAGGGTCCACTGTAGATGGAGCTGCCAGA
GTTGGACACCGTCTTGGTGCTCCTGCGCGCCATGATGCAGAGAACGGCGG
CGACCACGGCTAGCATAAGGATCAATCCGGCGATGGCAATGGCTATGGCG
AAGGTGCGTTGCGAAACGCACAGGGCGTCGTCCAGAGTCTTCTCCTTGTA
AACCGCGTCCTCGTCGCTGTCGTTGGCGTTTTCGTTCTCATTCACATATA
GGCCAGAGAAGACCTCAATGGTGGCGGGCAGACCGTCCTCCTCCTTGCTG
TCCGCGGCGGCTTGGCGCTTGGGCCTCTTGCCGCTGCACTGGGGAGCCTC
CTGGCAGGTGGGGTCCTCCAGGGCGCACAGTCGCACGTTGCACTGGTAGT
ACACGGAGGTGGTGTAGGGGAACTTGTGCGCCGGAAAGGTCACGTTGGCT
GCCAATCGGTCTTGGGTGTAGTTGAACTGACCCATGATCTCGTTGTCCAT
GGGGCAGCCATCTTCGCCCACCAGTCGCTGCTCTCCCCAGCCCAGACCAT
CGCGAACTATGCAGTCCGTGACATGGAGTCCGTAAACCTTCTGCTTATCG
ATGCTGATGACAATGGTCAGAGGATCACCGATCTTCACATCGTCGGCAAT
TTTGTGCTCGTCGTTGTAGATCTTCATGTGGCAGCCTGGCATGGGGATCT
CGTTGTTGGTCACGTCCTCCTCCTGCGTCGGGGCATTCGCATCGTAGACA
TCCTCCTCGTCCAGGTCGTCGTCCTGCTGCTTGTCCAGCGATCGTCCGTA
CTCCCGCCGATCATCGCTGCGGAAGGCCTGTGGCTTCTGGGCGTGCTTGC
GCATGTACTTTTTGGGCT
BS15628.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3541-PB | 1389 | pio-RB | 512..1382 | 918..48 | 4330 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:15:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pio-RE | 2374 | CG3541-RE | 600..1477 | 918..41 | 4345 | 99.7 | Minus |
pio-RD | 3128 | CG3541-RD | 1354..2231 | 918..41 | 4345 | 99.7 | Minus |
pio-RB | 2656 | CG3541-RB | 882..1759 | 918..41 | 4345 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:15:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24595979..24596339 | 918..558 | 1790 | 99.7 | Minus |
2R | 25286936 | 2R | 24596395..24596714 | 558..239 | 1600 | 100 | Minus |
2R | 25286936 | 2R | 24596766..24596965 | 240..41 | 970 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:15:55 has no hits.
BS15628.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:19 Download gff for
BS15628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pio-PB | 512..1389 | 41..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:43 Download gff for
BS15628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3541-PB | 512..1389 | 41..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:26:48 Download gff for
BS15628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pio-RB | 882..1761 | 37..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:51:00 Download gff for
BS15628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pio-RB | 882..1761 | 37..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:51:00 Download gff for
BS15628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24595979..24596339 | 558..918 | 99 | -> | Minus |
2R | 24596396..24596714 | 239..557 | 100 | -> | Minus |
2R | 24596768..24596967 | 37..238 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:26:48 Download gff for
BS15628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20483502..20483862 | 558..918 | 99 | -> | Minus |
arm_2R | 20483919..20484237 | 239..557 | 100 | -> | Minus |
arm_2R | 20484291..20484490 | 37..238 | 98 | | Minus |
BS15628.5prime Sequence
916 bp (803 high quality bases) assembled on 2006-12-21
> BS15628.5prime
GAAGTTATCCGTCGACATGAAGACAGGCACTCGAATGGACGCTTTCCACA
CGGCGCTGCACTTAATCACAATCGCAGCTCTGACGACGCACGCGGCGCAG
ATTCCAACGGCAATGAAAGATGCCCAGAGCTCGCTGAGCGATGCGATTGC
GGCGGCGGAGGCGGAGGTGGCCTCCACCTCTAAGCCGGCGGTGGAGCCGA
GTGTGCGGATCAAGTGCCTCTCCGGATCGATGCTGATCACCATTAAAGAC
GCTCCTCCGAACCACGAAACGGGCCTGTTCAGCGGCATGATCTACCCGAA
AGGCCTGTCCAAGAACTCCACCTGCTTGAGCGAGTACAGAGATCATGTGG
GCTCCCTGCGATATAAGCTGCCCCTGAGATCTTGCAACACGATGCCGAAG
GAAACGGATGACGGTGGCATTGAGTTCTTCAACACCATCGTGCTGCAGCC
CCACCTAAAGCTCATCACGGACCTGGGACGTGGCTACCACGTCCGCTGTG
CGTACAAGAGTCGGGACGCAGCCATGAAGCCCAAAAAGTACCTGCGCAAG
CACGCCCAGAAGCCACAGGCCTTCCGCAGCGATGATCGGCGGGAGTACGG
ACGATCGCTGGACAAGCAGCAGGACGACGACCTGGACGAGGAGGATGTCT
ACGATGCGAATGCCCCGACGCAGGAGGAGGACGTGACCAACAACGAGATC
CCCATGCCAGGCTGCCACATGAAGATCTACAACGACGAGCACAAAATTGC
CGACGATGTGAAGATCGGTGATCCTCTGACCATTGTCATCAGCATCGATA
AGCAGAAGGTTTACGGACTCCATGTCACGGACTGCATAGTTCGCGATGGT
CTGGGCTGGGGAGAGCAGCGACTGGTGGGCGAAGATGGCTGCCCCATGGA
CAACGAGATCATGGGT
BS15628.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3541-PB | 1389 | pio-RB | 1..900 | 17..916 | 4500 | 100 | Plus |
CG3541-PC | 471 | pio-RC | 1..391 | 17..407 | 1955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:29:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pio-RE | 2374 | CG3541-RE | 88..988 | 16..916 | 4505 | 100 | Plus |
pio-RD | 3128 | CG3541-RD | 842..1742 | 16..916 | 4505 | 100 | Plus |
pio-RB | 2656 | CG3541-RB | 370..1270 | 16..916 | 4505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:28:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24595857..24596339 | 406..888 | 2415 | 100 | Plus |
2R | 25286936 | 2R | 24591952..24592174 | 117..339 | 1115 | 100 | Plus |
2R | 25286936 | 2R | 24592230..24592300 | 337..407 | 355 | 100 | Plus |
2R | 25286936 | 2R | 24588754..24588805 | 16..67 | 260 | 100 | Plus |
2R | 25286936 | 2R | 24589377..24589425 | 68..116 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:28:59 has no hits.
BS15628.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:20 Download gff for
BS15628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pio-PB | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:45 Download gff for
BS15628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3541-PB | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 18:35:37 Download gff for
BS15628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pio-RB | 364..1270 | 12..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:47 Download gff for
BS15628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pio-RB | 364..1270 | 12..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:47 Download gff for
BS15628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24588748..24588805 | 12..67 | 96 | -> | Plus |
2R | 24589377..24589425 | 68..116 | 100 | -> | Plus |
2R | 24591952..24592174 | 117..339 | 100 | -> | Plus |
2R | 24592233..24592299 | 340..406 | 100 | -> | Plus |
2R | 24595858..24596339 | 407..888 | 100 | -> | Plus |
2R | 24596396..24596423 | 889..916 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 18:35:37 Download gff for
BS15628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20476271..20476328 | 12..67 | 96 | -> | Plus |
arm_2R | 20476900..20476948 | 68..116 | 100 | -> | Plus |
arm_2R | 20479475..20479697 | 117..339 | 100 | -> | Plus |
arm_2R | 20479756..20479822 | 340..406 | 100 | -> | Plus |
arm_2R | 20483381..20483862 | 407..888 | 100 | -> | Plus |
arm_2R | 20483919..20483946 | 889..916 | 100 | | Plus |
BS15628.pep Sequence
Translation from 16 to 1404
> BS15628.pep
MKTGTRMDAFHTALHLITIAALTTHAAQIPTAMKDAQSSLSDAIAAAEAE
VASTSKPAVEPSVRIKCLSGSMLITIKDAPPNHETGLFSGMIYPKGLSKN
STCLSEYRDHVGSLRYKLPLRSCNTMPKETDDGGIEFFNTIVLQPHLKLI
TDLGRGYHVRCAYKSRDAAMKPKKYLRKHAQKPQAFRSDDRREYGRSLDK
QQDDDLDEEDVYDANAPTQEEDVTNNEIPMPGCHMKIYNDEHKIADDVKI
GDPLTIVISIDKQKVYGLHVTDCIVRDGLGWGEQRLVGEDGCPMDNEIMG
QFNYTQDRLAANVTFPAHKFPYTTSVYYQCNVRLCALEDPTCQEAPQCSG
KRPKRQAAADSKEEDGLPATIEVFSGLYVNENENANDSDEDAVYKEKTLD
DALCVSQRTFAIAIAIAGLILMLAVVAAVLCIMARRSTKTVSNSGSSIYS
GPYTNTAFSHSS*
BS15628.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:04:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pio-PE | 462 | CG3541-PE | 1..462 | 1..462 | 2417 | 100 | Plus |
pio-PD | 462 | CG3541-PD | 1..462 | 1..462 | 2417 | 100 | Plus |
pio-PB | 462 | CG3541-PB | 1..462 | 1..462 | 2417 | 100 | Plus |
pio-PC | 156 | CG3541-PC | 1..130 | 1..130 | 661 | 100 | Plus |
dp-PM | 8579 | CG33196-PM | 8200..8551 | 61..442 | 229 | 23.7 | Plus |