Clone Sequence Records
BS15631.3prime Sequence
787 bp (757 high quality bases) assembled on 2006-12-21
> BS15631.3prime
ATGGTCTAGAAAGCTTCTACCTTTCGCCCAAGCCTGGATCATGATCATGA
TCACTTGGAGCACCTGACGATCCTGCGTCCAAATCCTGGCGTGGCCAGGA
GACGGGCGTGGAGCTATCATCACGGGGCTTGGCCTTTCCGAAGATGAGAG
CAGCCTGTTTGGTTTCAGCCAGAGAGTTGATGGGTGCAGTCACAGTCCTG
GGCTTGAGCACTAGCTTGGGCCGATCATCATCGTCGCGTACGGCGAATTG
ATTGCTCGAACTAGGACCTGTTCCAGATGATGCCGACTCGGATGCTCCGT
GCACAGGATGATTGTTCTCCCCGCCAAAGGTGTTGTTCCCATTGTTATTG
TAGCCGCCAGAACTTCCAGAGTGATTTGGATTGTAGTGTCCACGGCGATC
GCGATTGCGATTCTGCACAAAATTGGTATAGTTGCCGCCTCCATTTACGA
CCCCGAATCCACCGCCGCCTCCATTTCCATTGAAGTTCCGCTGCGGATGC
CCGCCCCTACCTACTCCAGCACCTCCTCCGCCGACGCTGTTGTTCATGGA
TCGGTTAAAGTTGTAGGTGCGATTGCGTTGGAATCCTCCGCTGCCGGTCG
ATTGCTGATCCTCGCGGTCATTGAAGTTACGTGGAGCTCCTCCTTGGTAA
CGATTGCCATTTCCACCTACAGCAACACGGCTATTGAAACCACCTCGAGT
GGTGCGGTTGTAATTAATGGACGTGGTGCTTTGTGTGGGGCTGCTATTGG
ACATTTGGTGGTTGCTGCTGTTGCTGCGCGGTTCCCT
BS15631.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1340-PA | 1380 | CG1340-RA | 610..1373 | 787..24 | 3795 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 12:25:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1340-RC | 1843 | CG1340-RC | 833..1596 | 787..24 | 3805 | 99.9 | Minus |
CG1340-RA | 1851 | CG1340-RA | 833..1596 | 787..24 | 3805 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 12:25:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30727214..30727742 | 552..24 | 2630 | 99.8 | Minus |
3R | 32079331 | 3R | 30726919..30727154 | 787..552 | 1180 | 100 | Minus |
Blast to na_te.dros performed 2015-01-30 12:25:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..6882 | 783..700 | 123 | 64.8 | Minus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3290..3370 | 785..708 | 118 | 65.9 | Minus |
BS15631.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:25 Download gff for
BS15631.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1340-PA | 610..1380 | 17..787 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:52 Download gff for
BS15631.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1340-PA | 610..1380 | 17..787 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:36:21 Download gff for
BS15631.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1340-RA | 833..1604 | 16..787 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:00:59 Download gff for
BS15631.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1340-RA | 833..1604 | 16..787 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 14:00:59 Download gff for
BS15631.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30726919..30727154 | 552..787 | 100 | -> | Minus |
3R | 30727215..30727750 | 16..551 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:36:21 Download gff for
BS15631.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26552641..26552876 | 552..787 | 100 | -> | Minus |
arm_3R | 26552937..26553472 | 16..551 | 99 | | Minus |
BS15631.5prime Sequence
806 bp (766 high quality bases) assembled on 2006-12-21
> BS15631.5prime
GAAGTTATCCTTCGACATGGCCAATCGCTCCAGCCAGCGGGACCGAGAGT
TCAATCGTGATAATACTTACAATAACAATCGCGACAATCGAGACCATAAT
CGGGACAATCGCGATAATCGGGAGAATCGCAGTAATTTCCAAAACTATCG
CAATCGTGACAGGGATCGCGATAGGCAGCGTCAGGTGCCCACGGAACCTC
CGTTCATCGCTTATGTGGGCAACCTTCCCAAGGGTCTCGTCCAGGGCGAT
GTGATGAAGATATTTTCGGACTTCGAGGTGAAGAATGTGCGCCTGATCAA
GGACCGTGAGACGGATGAATTCAAAGGCTATGGCTACGTAGAGTTCGAGA
CTCTGGCACAACTGAAGAGTGCTCTCAACTGCAACGGACGCATCAAGCTA
GACAACTTTTCGGCCCCCCTGCGTATCGATATAGCCGACCATCGCCGGCA
GAACCCGGGTGCTCCCAGCGGTGTTGGCGGAGCTCCTCCAGCCGGAGTGG
GCCACGAAAGAGGTGGTGGCGTCGGAAGAGGAGGCAGCACGGGTGCAGCA
AACGGTAACAATCCCTACTACCAGAGGCGCAACTATCGGCGGGACGACAG
TGTGGGATCCCATCAGTTTAGAAGGAGGGAACCGCGCAGCAACAGCAGCA
ACCACCAAATGTCCAATAGCAGCCCCACACAAAGCACCACGTCCATTAAT
TACAACCGCACCACTCGAGGTGGTTTCAATAGCCGTGTTGCTGTAGGTGG
AAATGGCAATCGTTACCAAAGAGGAGCTCCACGTAACTTCAATGACCGCG
AGGATC
BS15631.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1340-PA | 1380 | CG1340-RA | 1..790 | 17..806 | 3925 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 03:58:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1340-RC | 1843 | CG1340-RC | 223..1013 | 16..806 | 3940 | 99.9 | Plus |
CG1340-RA | 1851 | CG1340-RA | 223..1013 | 16..806 | 3940 | 99.9 | Plus |
Rbp2-RC | 2640 | CG4429-RC | 97..353 | 182..438 | 355 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 03:58:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30726309..30727099 | 16..806 | 3940 | 99.9 | Plus |
X | 23542271 | X | 16449905..16450079 | 182..356 | 350 | 80 | Plus |
Blast to na_te.dros performed 2015-01-31 03:58:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..6882 | 630..713 | 123 | 64.8 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3290..3370 | 628..705 | 118 | 65.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1092..1155 | 620..684 | 114 | 69.7 | Plus |
BS15631.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:26 Download gff for
BS15631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1340-PA | 1..790 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:54 Download gff for
BS15631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1340-PA | 1..790 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 20:52:40 Download gff for
BS15631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1340-RA | 215..1013 | 9..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 05:24:59 Download gff for
BS15631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1340-RA | 215..1013 | 9..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 05:24:59 Download gff for
BS15631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30726301..30727099 | 9..806 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 20:52:40 Download gff for
BS15631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26552023..26552821 | 9..806 | 99 | | Plus |
BS15631.complete Sequence
1412 bp assembled on 2009-12-07
GenBank Submission: KX800282
> BS15631.complete
GAAGTTATCAGTCGACATGGCCAATCGCTCCAGCCAGCGGGACCGAGAGT
TCAATCGTGATAATACTTACAATAACAATCGCGACAATCGAGACCATAAT
CGGGACAATCGCGATAATCGGGAGAATCGCAGTAATTTCCAAAACTATCG
CAATCGTGACAGGGATCGCGATAGGCAGCGTCAGGTGCCCACGGAACCTC
CGTTCATCGCTTATGTGGGCAACCTTCCCAAGGGTCTCGTCCAGGGCGAT
GTGATGAAGATATTTTCGGACTTCGAGGTGAAGAATGTGCGCCTGATCAA
GGACCGTGAGACGGATGAATTCAAAGGCTATGGCTACGTAGAGTTCGAGA
CTCTGGCACAACTGAAGAGTGCTCTCAACTGCAACGGACGCATCAAGCTA
GACAACTTTTCGGCCCCCCTGCGTATCGATATAGCCGACCATCGCCGGCA
GAACCCGGGTGCTCCCAGCGGTGTTGGCGGAGCTCCTCCAGCCGGAGTGG
GCCACGAAAGAGGTGGTGGCGTCGGAAGAGGAGGCAGCACGGGTGCAGCA
AACGGTAACAATCCCTACTACCAGAGGCGCAACTATCGGCGGGACGACAG
TGTGGGATCCCATCAGTTTAGAAGGAGGGAACCGCGCAGCAACAGCAGCA
ACCACCAAATGTCCAATAGCAGCCCCACACAAAGCACCACGTCCATTAAT
TACAACCGCACCACTCGAGGTGGTTTCAATAGCCGTGTTGCTGTAGGTGG
AAATGGCAATCGTTACCAAGGAGGAGCTCCACGTAACTTCAATGACCGCG
AGGATCAGCAATCGACCGGCAGCGGAGGATTCCAACGCAATCGCACCTAC
AACTTTAACCGATCCATGAACAACAGCGTCGGCGGAGGAGGTGCTGGAGT
AGGTAGGGGCGGGCATCCGCAGCGGAACTTCAATGGAAATGGAGGCGGCG
GTGGATTCGGGGTCGTAAATGGAGGCGGCAACTATACCAATTTTGTGCAG
AATCGCAATCGCGATCGCCGTGGACACTACAATCCAAATCACTCTGGAAG
TTCTGGCGGCTACAATAACAATGGGAACAACACCTTTGGCGGGGAGAACA
ATCATCCTGTGCACGGAGCATCCGAGTCGGCATCATCTGGAACAGGTCCT
AGTTCGAGCAATCAATTCGCCGTACGCGACGATGATGATCGGCCCAAGCT
AGTGCTCAAGCCCAGGACTGTGACTGCACCCATCAACTCTCTGGCTGAAA
CCAAACAGGCTGCTCTCATCTTCGGAAAGGCCAAGCCCCGTGATGATAGC
TCCACGCCCGTCTCCTCGCCACGCCAGGATTTGGACGCAGGATCGTCAGG
TGCTCCAAGTGATCATGATCATGATCCAGGCTTGGGCGACAACTAGAAGC
TTTCTAGACCAT
BS15631.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:51:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1340-RC | 1380 | CG1340-PC | 1..1380 | 17..1396 | 6900 | 100 | Plus |
CG1340-RA | 1380 | CG1340-PA | 1..1380 | 17..1396 | 6900 | 100 | Plus |
Rbp2-RC | 1077 | CG4429-PC | 64..238 | 182..356 | 350 | 80 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1340-RC | 1843 | CG1340-RC | 223..1604 | 16..1397 | 6910 | 100 | Plus |
CG1340-RA | 1851 | CG1340-RA | 223..1604 | 16..1397 | 6910 | 100 | Plus |
Rbp2-RC | 2640 | CG4429-RC | 97..271 | 182..356 | 350 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30726309..30727154 | 16..861 | 4230 | 100 | Plus |
3R | 32079331 | 3R | 30727214..30727750 | 861..1397 | 2685 | 100 | Plus |
X | 23542271 | X | 16449905..16450079 | 182..356 | 350 | 80 | Plus |
Blast to na_te.dros performed 2014-11-28 01:51:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..6882 | 630..713 | 123 | 64.8 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3290..3370 | 628..705 | 118 | 65.9 | Plus |
BS15631.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:22 Download gff for
BS15631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1340-RA | 224..1603 | 17..1396 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:52 Download gff for
BS15631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1340-RA | 224..1603 | 17..1396 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:02:12 Download gff for
BS15631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1340-RA | 224..1603 | 17..1396 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:37 Download gff for
BS15631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1340-RA | 224..1603 | 17..1396 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:37 Download gff for
BS15631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30726310..30727154 | 17..861 | 100 | -> | Plus |
3R | 30727215..30727749 | 862..1396 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:52 Download gff for
BS15631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26552032..26552876 | 17..861 | 100 | -> | Plus |
arm_3R | 26552937..26553471 | 862..1396 | 100 | | Plus |
BS15631.pep Sequence
Translation from 16 to 1395
> BS15631.pep
MANRSSQRDREFNRDNTYNNNRDNRDHNRDNRDNRENRSNFQNYRNRDRD
RDRQRQVPTEPPFIAYVGNLPKGLVQGDVMKIFSDFEVKNVRLIKDRETD
EFKGYGYVEFETLAQLKSALNCNGRIKLDNFSAPLRIDIADHRRQNPGAP
SGVGGAPPAGVGHERGGGVGRGGSTGAANGNNPYYQRRNYRRDDSVGSHQ
FRRREPRSNSSNHQMSNSSPTQSTTSINYNRTTRGGFNSRVAVGGNGNRY
QGGAPRNFNDREDQQSTGSGGFQRNRTYNFNRSMNNSVGGGGAGVGRGGH
PQRNFNGNGGGGGFGVVNGGGNYTNFVQNRNRDRRGHYNPNHSGSSGGYN
NNGNNTFGGENNHPVHGASESASSGTGPSSSNQFAVRDDDDRPKLVLKPR
TVTAPINSLAETKQAALIFGKAKPRDDSSTPVSSPRQDLDAGSSGAPSDH
DHDPGLGDN*
BS15631.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:54:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1340-PC | 459 | CG1340-PC | 1..459 | 1..459 | 2477 | 100 | Plus |
CG1340-PA | 459 | CG1340-PA | 1..459 | 1..459 | 2477 | 100 | Plus |
Rbp2-PC | 358 | CG4429-PC | 4..343 | 38..427 | 619 | 41.4 | Plus |
Rbp2-PD | 388 | CG4429-PD | 4..373 | 38..427 | 609 | 40.7 | Plus |
Rbp2-PA | 325 | CG4429-PA | 4..310 | 38..427 | 582 | 39.4 | Plus |