Clone BS15631 Report

Search the DGRC for BS15631

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:156
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptCG1340-RA
Protein status:BS15631.pep: full length peptide match
Sequenced Size:1412

Clone Sequence Records

BS15631.3prime Sequence

787 bp (757 high quality bases) assembled on 2006-12-21

> BS15631.3prime
ATGGTCTAGAAAGCTTCTACCTTTCGCCCAAGCCTGGATCATGATCATGA
TCACTTGGAGCACCTGACGATCCTGCGTCCAAATCCTGGCGTGGCCAGGA
GACGGGCGTGGAGCTATCATCACGGGGCTTGGCCTTTCCGAAGATGAGAG
CAGCCTGTTTGGTTTCAGCCAGAGAGTTGATGGGTGCAGTCACAGTCCTG
GGCTTGAGCACTAGCTTGGGCCGATCATCATCGTCGCGTACGGCGAATTG
ATTGCTCGAACTAGGACCTGTTCCAGATGATGCCGACTCGGATGCTCCGT
GCACAGGATGATTGTTCTCCCCGCCAAAGGTGTTGTTCCCATTGTTATTG
TAGCCGCCAGAACTTCCAGAGTGATTTGGATTGTAGTGTCCACGGCGATC
GCGATTGCGATTCTGCACAAAATTGGTATAGTTGCCGCCTCCATTTACGA
CCCCGAATCCACCGCCGCCTCCATTTCCATTGAAGTTCCGCTGCGGATGC
CCGCCCCTACCTACTCCAGCACCTCCTCCGCCGACGCTGTTGTTCATGGA
TCGGTTAAAGTTGTAGGTGCGATTGCGTTGGAATCCTCCGCTGCCGGTCG
ATTGCTGATCCTCGCGGTCATTGAAGTTACGTGGAGCTCCTCCTTGGTAA
CGATTGCCATTTCCACCTACAGCAACACGGCTATTGAAACCACCTCGAGT
GGTGCGGTTGTAATTAATGGACGTGGTGCTTTGTGTGGGGCTGCTATTGG
ACATTTGGTGGTTGCTGCTGTTGCTGCGCGGTTCCCT

BS15631.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1340-PA 1380 CG1340-RA 610..1373 787..24 3795 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 12:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1340-RC 1843 CG1340-RC 833..1596 787..24 3805 99.9 Minus
CG1340-RA 1851 CG1340-RA 833..1596 787..24 3805 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 12:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30727214..30727742 552..24 2630 99.8 Minus
3R 32079331 3R 30726919..30727154 787..552 1180 100 Minus
Blast to na_te.dros performed 2015-01-30 12:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6795..6882 783..700 123 64.8 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3290..3370 785..708 118 65.9 Minus

BS15631.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:25 Download gff for BS15631.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1340-PA 610..1380 17..787 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:52 Download gff for BS15631.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1340-PA 610..1380 17..787 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:36:21 Download gff for BS15631.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1340-RA 833..1604 16..787 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:00:59 Download gff for BS15631.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1340-RA 833..1604 16..787 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 14:00:59 Download gff for BS15631.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30726919..30727154 552..787 100 -> Minus
3R 30727215..30727750 16..551 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:36:21 Download gff for BS15631.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26552641..26552876 552..787 100 -> Minus
arm_3R 26552937..26553472 16..551 99   Minus

BS15631.5prime Sequence

806 bp (766 high quality bases) assembled on 2006-12-21

> BS15631.5prime
GAAGTTATCCTTCGACATGGCCAATCGCTCCAGCCAGCGGGACCGAGAGT
TCAATCGTGATAATACTTACAATAACAATCGCGACAATCGAGACCATAAT
CGGGACAATCGCGATAATCGGGAGAATCGCAGTAATTTCCAAAACTATCG
CAATCGTGACAGGGATCGCGATAGGCAGCGTCAGGTGCCCACGGAACCTC
CGTTCATCGCTTATGTGGGCAACCTTCCCAAGGGTCTCGTCCAGGGCGAT
GTGATGAAGATATTTTCGGACTTCGAGGTGAAGAATGTGCGCCTGATCAA
GGACCGTGAGACGGATGAATTCAAAGGCTATGGCTACGTAGAGTTCGAGA
CTCTGGCACAACTGAAGAGTGCTCTCAACTGCAACGGACGCATCAAGCTA
GACAACTTTTCGGCCCCCCTGCGTATCGATATAGCCGACCATCGCCGGCA
GAACCCGGGTGCTCCCAGCGGTGTTGGCGGAGCTCCTCCAGCCGGAGTGG
GCCACGAAAGAGGTGGTGGCGTCGGAAGAGGAGGCAGCACGGGTGCAGCA
AACGGTAACAATCCCTACTACCAGAGGCGCAACTATCGGCGGGACGACAG
TGTGGGATCCCATCAGTTTAGAAGGAGGGAACCGCGCAGCAACAGCAGCA
ACCACCAAATGTCCAATAGCAGCCCCACACAAAGCACCACGTCCATTAAT
TACAACCGCACCACTCGAGGTGGTTTCAATAGCCGTGTTGCTGTAGGTGG
AAATGGCAATCGTTACCAAAGAGGAGCTCCACGTAACTTCAATGACCGCG
AGGATC

BS15631.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1340-PA 1380 CG1340-RA 1..790 17..806 3925 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 03:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG1340-RC 1843 CG1340-RC 223..1013 16..806 3940 99.9 Plus
CG1340-RA 1851 CG1340-RA 223..1013 16..806 3940 99.9 Plus
Rbp2-RC 2640 CG4429-RC 97..353 182..438 355 76.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 03:58:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30726309..30727099 16..806 3940 99.9 Plus
X 23542271 X 16449905..16450079 182..356 350 80 Plus
Blast to na_te.dros performed 2015-01-31 03:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6795..6882 630..713 123 64.8 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3290..3370 628..705 118 65.9 Plus
roo 9092 roo DM_ROO 9092bp 1092..1155 620..684 114 69.7 Plus

BS15631.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:26 Download gff for BS15631.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1340-PA 1..790 17..806 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:10:54 Download gff for BS15631.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1340-PA 1..790 17..806 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 20:52:40 Download gff for BS15631.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1340-RA 215..1013 9..806 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 05:24:59 Download gff for BS15631.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1340-RA 215..1013 9..806 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 05:24:59 Download gff for BS15631.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30726301..30727099 9..806 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 20:52:40 Download gff for BS15631.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26552023..26552821 9..806 99   Plus

BS15631.complete Sequence

1412 bp assembled on 2009-12-07

GenBank Submission: KX800282

> BS15631.complete
GAAGTTATCAGTCGACATGGCCAATCGCTCCAGCCAGCGGGACCGAGAGT
TCAATCGTGATAATACTTACAATAACAATCGCGACAATCGAGACCATAAT
CGGGACAATCGCGATAATCGGGAGAATCGCAGTAATTTCCAAAACTATCG
CAATCGTGACAGGGATCGCGATAGGCAGCGTCAGGTGCCCACGGAACCTC
CGTTCATCGCTTATGTGGGCAACCTTCCCAAGGGTCTCGTCCAGGGCGAT
GTGATGAAGATATTTTCGGACTTCGAGGTGAAGAATGTGCGCCTGATCAA
GGACCGTGAGACGGATGAATTCAAAGGCTATGGCTACGTAGAGTTCGAGA
CTCTGGCACAACTGAAGAGTGCTCTCAACTGCAACGGACGCATCAAGCTA
GACAACTTTTCGGCCCCCCTGCGTATCGATATAGCCGACCATCGCCGGCA
GAACCCGGGTGCTCCCAGCGGTGTTGGCGGAGCTCCTCCAGCCGGAGTGG
GCCACGAAAGAGGTGGTGGCGTCGGAAGAGGAGGCAGCACGGGTGCAGCA
AACGGTAACAATCCCTACTACCAGAGGCGCAACTATCGGCGGGACGACAG
TGTGGGATCCCATCAGTTTAGAAGGAGGGAACCGCGCAGCAACAGCAGCA
ACCACCAAATGTCCAATAGCAGCCCCACACAAAGCACCACGTCCATTAAT
TACAACCGCACCACTCGAGGTGGTTTCAATAGCCGTGTTGCTGTAGGTGG
AAATGGCAATCGTTACCAAGGAGGAGCTCCACGTAACTTCAATGACCGCG
AGGATCAGCAATCGACCGGCAGCGGAGGATTCCAACGCAATCGCACCTAC
AACTTTAACCGATCCATGAACAACAGCGTCGGCGGAGGAGGTGCTGGAGT
AGGTAGGGGCGGGCATCCGCAGCGGAACTTCAATGGAAATGGAGGCGGCG
GTGGATTCGGGGTCGTAAATGGAGGCGGCAACTATACCAATTTTGTGCAG
AATCGCAATCGCGATCGCCGTGGACACTACAATCCAAATCACTCTGGAAG
TTCTGGCGGCTACAATAACAATGGGAACAACACCTTTGGCGGGGAGAACA
ATCATCCTGTGCACGGAGCATCCGAGTCGGCATCATCTGGAACAGGTCCT
AGTTCGAGCAATCAATTCGCCGTACGCGACGATGATGATCGGCCCAAGCT
AGTGCTCAAGCCCAGGACTGTGACTGCACCCATCAACTCTCTGGCTGAAA
CCAAACAGGCTGCTCTCATCTTCGGAAAGGCCAAGCCCCGTGATGATAGC
TCCACGCCCGTCTCCTCGCCACGCCAGGATTTGGACGCAGGATCGTCAGG
TGCTCCAAGTGATCATGATCATGATCCAGGCTTGGGCGACAACTAGAAGC
TTTCTAGACCAT

BS15631.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1340-RC 1380 CG1340-PC 1..1380 17..1396 6900 100 Plus
CG1340-RA 1380 CG1340-PA 1..1380 17..1396 6900 100 Plus
Rbp2-RC 1077 CG4429-PC 64..238 182..356 350 80 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG1340-RC 1843 CG1340-RC 223..1604 16..1397 6910 100 Plus
CG1340-RA 1851 CG1340-RA 223..1604 16..1397 6910 100 Plus
Rbp2-RC 2640 CG4429-RC 97..271 182..356 350 80 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30726309..30727154 16..861 4230 100 Plus
3R 32079331 3R 30727214..30727750 861..1397 2685 100 Plus
X 23542271 X 16449905..16450079 182..356 350 80 Plus
Blast to na_te.dros performed 2014-11-28 01:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6795..6882 630..713 123 64.8 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3290..3370 628..705 118 65.9 Plus

BS15631.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:22 Download gff for BS15631.complete
Subject Subject Range Query Range Percent Splice Strand
CG1340-RA 224..1603 17..1396 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:52 Download gff for BS15631.complete
Subject Subject Range Query Range Percent Splice Strand
CG1340-RA 224..1603 17..1396 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:02:12 Download gff for BS15631.complete
Subject Subject Range Query Range Percent Splice Strand
CG1340-RA 224..1603 17..1396 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:37 Download gff for BS15631.complete
Subject Subject Range Query Range Percent Splice Strand
CG1340-RA 224..1603 17..1396 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:37 Download gff for BS15631.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30726310..30727154 17..861 100 -> Plus
3R 30727215..30727749 862..1396 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:52 Download gff for BS15631.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26552032..26552876 17..861 100 -> Plus
arm_3R 26552937..26553471 862..1396 100   Plus

BS15631.pep Sequence

Translation from 16 to 1395

> BS15631.pep
MANRSSQRDREFNRDNTYNNNRDNRDHNRDNRDNRENRSNFQNYRNRDRD
RDRQRQVPTEPPFIAYVGNLPKGLVQGDVMKIFSDFEVKNVRLIKDRETD
EFKGYGYVEFETLAQLKSALNCNGRIKLDNFSAPLRIDIADHRRQNPGAP
SGVGGAPPAGVGHERGGGVGRGGSTGAANGNNPYYQRRNYRRDDSVGSHQ
FRRREPRSNSSNHQMSNSSPTQSTTSINYNRTTRGGFNSRVAVGGNGNRY
QGGAPRNFNDREDQQSTGSGGFQRNRTYNFNRSMNNSVGGGGAGVGRGGH
PQRNFNGNGGGGGFGVVNGGGNYTNFVQNRNRDRRGHYNPNHSGSSGGYN
NNGNNTFGGENNHPVHGASESASSGTGPSSSNQFAVRDDDDRPKLVLKPR
TVTAPINSLAETKQAALIFGKAKPRDDSSTPVSSPRQDLDAGSSGAPSDH
DHDPGLGDN*

BS15631.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:54:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG1340-PC 459 CG1340-PC 1..459 1..459 2477 100 Plus
CG1340-PA 459 CG1340-PA 1..459 1..459 2477 100 Plus
Rbp2-PC 358 CG4429-PC 4..343 38..427 619 41.4 Plus
Rbp2-PD 388 CG4429-PD 4..373 38..427 609 40.7 Plus
Rbp2-PA 325 CG4429-PA 4..310 38..427 582 39.4 Plus