Clone Sequence Records
BS15634.3prime Sequence
881 bp (795 high quality bases) assembled on 2006-12-21
> BS15634.3prime
ATGGTCTAGAAAGCTTTTATTCTTCCAGAGTCTCGACCTCATCGGCAGCC
ACAATGTCTCGCTTGGCGGCCGTCTTAATGCTGGCCAGATACTTATCACC
ATCGAAGCGCTGGCTCTCATCCTGCAGATCCTTGTTGCGCAGAATCGAGG
GCGCTGTCTCCTGCATCTTTTGCCAGTCGGTGGGCAGGGTCCACGAGTGC
GGACTCATGGAGTAGTAGAGCAAGTGTTCAATATCGTAAGAAACGCGAGA
TGCATTGCTTTTCAAGGAATTGGTGCCTGCCAAATCGTCCAAGTCACCCT
TTTCCCGAGCGCCCTTGGTCTCCGGCGTGGACTCCTTGCGCGAAAAGTGG
CTGCGACGCGATCTGGCCAGTCCATTCTGATTGCTAGTCGATGATCCTCC
ATTGCTGGGCTCAGCGAACACCTCGTCGTCGCCTTCACCATTGTTGTTCG
CTGACGAGGAAACAACGCAATTCAGTCCAATGCCACTGTCCGTGCCGGGC
AGCCAAAATTGCGGCGGCCCGGCTCCGGGAAGCGGAGTCGATGGCGTGGT
CACCAGCGAAGTGCCGTCGAAGGCGGCGCCAGCCTCAATGGATGCCAGAA
ACTCCGAGCTGCTAAAATAGTCATCGAGCACGAGTTTGGCCACGCGCACT
AGTTCGCAGCAGTCGCCGGTGATCTTGATCAGGTGCTGGCCCACGTTGAC
CGTGAACTTGTATTCACCTACGGAAGCATCGTTTGTGGAATATGAGTGCA
TTAGCAGCTGTTGATTGGGACGCAAGACTTTACCGGCAGCGGCTGTCGCC
TGAGCATGTGCCGCCGCTGCTGCTGCGGCGGCTACTGCGGCGACCTGCTG
CTGCTGTTGGTGCTGCANGTGATGCGTTTGG
BS15634.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2950-PB | 1962 | CG2950-RB | 1098..1962 | 881..17 | 4281 | 99.7 | Minus |
| CG2950-PA | 1962 | CG2950-RA | 1098..1962 | 881..17 | 4281 | 99.7 | Minus |
| CG2950-PC | 1962 | CG2950-RC | 1098..1962 | 881..17 | 4281 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 04:18:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mxt-RF | 2264 | CG2950-RF | 1256..2121 | 881..16 | 4304 | 99.8 | Minus |
| mxt-RE | 2351 | CG2950-RE | 1343..2208 | 881..16 | 4304 | 99.8 | Minus |
| mxt-RC | 2328 | CG2950-RC | 1320..2185 | 881..16 | 4304 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 04:18:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4843718..4844111 | 250..643 | 1970 | 100 | Plus |
| 2L | 23513712 | 2L | 4844166..4844406 | 641..881 | 1194 | 99.6 | Plus |
| 2L | 23513712 | 2L | 4843539..4843658 | 130..249 | 600 | 100 | Plus |
| 2L | 23513712 | 2L | 4842233..4842349 | 16..132 | 570 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-01-31 04:18:08 has no hits.
BS15634.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:31 Download gff for
BS15634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2950-PA | 1098..1962 | 17..881 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:11:00 Download gff for
BS15634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2950-PC | 1098..1962 | 17..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 20:55:53 Download gff for
BS15634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2950-RC | 1320..2191 | 9..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 05:27:49 Download gff for
BS15634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mxt-RC | 1320..2191 | 9..881 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 05:27:49 Download gff for
BS15634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4843540..4843658 | 131..249 | 100 | <- | Plus |
| 2L | 4842227..4842347 | 9..130 | 96 | <- | Plus |
| 2L | 4843718..4844111 | 250..643 | 100 | <- | Plus |
| 2L | 4844169..4844406 | 644..881 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 20:55:53 Download gff for
BS15634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4843540..4843658 | 131..249 | 100 | <- | Plus |
| arm_2L | 4842227..4842347 | 9..130 | 96 | <- | Plus |
| arm_2L | 4843718..4844111 | 250..643 | 100 | <- | Plus |
| arm_2L | 4844169..4844406 | 644..881 | 99 | | Plus |
BS15634.5prime Sequence
804 bp (741 high quality bases) assembled on 2006-12-21
> BS15634.5prime
GAAGTTATCCTTTGACATGGCTCACACACACCTGGGACGCGCCGTGAAAA
ACATTGAGGCGCCACGCCCGTTGAAGACACAATCGCGATCGTCGTTGAAG
AACAGCTACCTGGTGATCGAGGAGCTAATCCAGTTGATAGACAACGTGAC
CGTCGGTCTTCAGTCGTGCAACACCACGCCGGAATCGATCACGCTGCTCC
TGCACAACCTCCGGGTGCATGGACCGCAACTGGAGGCGGTGTCCAAGGAT
ACACTGGACCGGGCCTTCGTCGTTTTCCGCAACGCTTCGCAGGACGAACG
GCTGAATATAACGACGCGCCTCAAGCTGCTCGAACTCATCGAGCTGCGCG
CCAAGAGCTGGGACAATGACGACACAATCGCGTACTACAAGTCCAAGCAG
CAGATCTCCAACGTGGAGCTGCCTTCGGAATACCAGTACGATGCCGGCGT
GCAGCCTGGCGCCTTCAGCACCTCCCCCACATTCGGCGTCAGCGGCGGTG
TTGGTGGCGTTAACGATGGAGCCGCAGCCGCCGCTGCCGCCGTCTTCAAT
GCAGCATCTGCAGCTGCAGCCGCCCAAGCTGCGGCCATTGCGGCCGTGGG
CACATCCAACCAGCAGCACATGCTGCTGCCGCCCGGTGAGGTCATTCGTA
ATTCGGGCAAGTTCCCCAAACCGACCAAGATTCCTGGCAAGACGTACTGC
AAGGACGAGGTCGTGATTCGCAATGCTGACTCCGGCAAAGTAATGGGCAT
CAAGGGGCGTCGCGTGCACATGATCGAGGAGCTAAGCGAAACCATTATAT
CGTT
BS15634.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2950-PB | 1962 | CG2950-RB | 1..788 | 17..804 | 3940 | 100 | Plus |
| CG2950-PA | 1962 | CG2950-RA | 1..788 | 17..804 | 3940 | 100 | Plus |
| CG2950-PC | 1962 | CG2950-RC | 1..788 | 17..804 | 3940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 12:26:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mxt-RD | 3034 | CG2950-RD | 231..1018 | 17..804 | 3940 | 100 | Plus |
| mxt-RG | 2878 | CG2950-RG | 231..1018 | 17..804 | 3940 | 100 | Plus |
| mxt-RE | 2351 | CG2950-RE | 246..1033 | 17..804 | 3940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 12:26:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4845642..4846043 | 418..17 | 2010 | 100 | Minus |
| 2L | 23513712 | 2L | 4845254..4845577 | 740..417 | 1620 | 100 | Minus |
| 2L | 23513712 | 2L | 4845095..4845162 | 804..737 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 12:26:51 has no hits.
BS15634.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:32 Download gff for
BS15634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2950-PA | 1..788 | 17..804 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:11:02 Download gff for
BS15634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2950-PC | 1..788 | 17..804 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:36:39 Download gff for
BS15634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2950-RE | 237..1033 | 7..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:01:11 Download gff for
BS15634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mxt-RE | 237..1033 | 7..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 14:01:11 Download gff for
BS15634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4845095..4845158 | 741..804 | 100 | <- | Minus |
| 2L | 4845254..4845575 | 419..740 | 100 | <- | Minus |
| 2L | 4845642..4846052 | 7..418 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:36:39 Download gff for
BS15634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4845095..4845158 | 741..804 | 100 | <- | Minus |
| arm_2L | 4845254..4845575 | 419..740 | 100 | <- | Minus |
| arm_2L | 4845642..4846052 | 7..418 | 99 | | Minus |
BS15634.complete Sequence
1994 bp assembled on 2009-08-24
GenBank Submission: KX806061
> BS15634.complete
GAAGTTATCAGTCGACATGGCTCACACACACCTGGGACGCGCCGTGAAAA
ACATTGAGGCGCCACGCCCGTTGAAGACACAATCGCGATCGTCGTTGAAG
AACAGCTACCTGGTGATCGAGGAGCTAATCCAGTTGATAGACAACGTGAC
CGTCGGTCTTCAGTCGTGCAACACCACGCCGGAATCGATCACGCTGCTCC
TGCACAACCTCCGGGTGCATGGACCGCAACTGGAGGCGGTGTCCAAGGAT
ACACTGGACCGGGCCTTCGTCGTTTTCCGCAACGCTTCGCAGGACGAACG
GCTGAATATAACGACGCGCCTCAAGCTGCTCGAACTCATCGAGCTGCGCG
CCAAGAGCTGGGACAATGACGACACAATCGCGTACTACAAGTCCAAGCAG
CAGATCTCCAACGTGGAGCTGCCTTCGGAATACCAGTACGATGCCGGCGT
GCAGCCTGGCGCCTTCAGCACCTCCCCCACATTCGGCGTCAGCGGCGGTG
TTGGTGGCGTTAACGATGGAGCCGCAGCCGCCGCTGCCGCCGTCTTCAAT
GCAGCATCTGCAGCTGCAGCCGCCCAAGCTGCGGCCATTGCGGCCGTGGG
CACATCCAACCAGCAGCACATGCTGCTGCCGCCCGGTGAGGTCATTCGTA
ATTCGGGCAAGTTCCCCAAACCGACCAAGATTCCTGGCAAGACGTACTGC
AAGGACGAGGTCGTGATTCGCAATGCTGACTCCGGCAAAGTAATGGGCAT
CAAGGGGCGTCGCGTGCACATGATCGAGGAGCTAAGCGAAACCATTATAT
CGTTTCAAAGAGTCAACCCGGGTGCCAAGGAGCGTTTGGTGCAGATTACT
GGTCCAGCTGAGGATAAAATTAACTATGCCAAACAACTTATGGAGGACAC
CATTCGTCGGAACGCCTCGCCGGTGCGCCTGGAACCCGCTCCTGCCGTTG
GAGGATCCTGCTCCTCGCTTAACTCGTCCAACTCGGACGACGCCATTGTG
CAACCAAGAACGCCAACCGGAAGCAGTTTGGCCAACCGGCTAAGCTTTAA
CTCGGCCCAAAACTTCATGACCGCCACAGCTGCTGCACAGCAGATCTCGC
AGCAGATGCACCACCAAACGCATCACCTGCAGCACCAACAGCAGCAGCAG
GTCGCCGCAGTAGCCGCCGCAGCAGCAGCGGCGGCACATGCTCAGGCGAC
AGCCGCTGCCGGTAAAGTCTTGCGTCCCAATCAACAGCTGCTAATGCACT
CATATTCCACAAACGATGCTTCCGTAGGTGAATACAAGTTCACGGTCAAC
GTGGGCCAGCACCTGATCAAGATCACCGGCGACTGCTGCGAACTAGTGCG
CGTGGCCAAACTCGTGCTCGATGACTATTTTAGCAGCTCGGAGTTTCTGG
CATCCATTGAGGCTGGCGCCGCCTTCGACGGCACTTCGCTGGTGACCACG
CCATCGACTCCGCTTCCCGGAGCCGGGCCGCCGCAATTTTGGCTGCCCGG
CACGGACAGTGGCATTGGACTGAATTGCGTTGTTTCCTCGTCAGCGAACA
ACAATGGTGAAGGCGACGACGAGGTGTTCGCTGAGCCCAGCAATGGAGGA
TCATCGACTAGCAATCAGAATGGACTGGCCAGATCGCGTCGCAGCCACTT
TTCGCGCAAGGAGTCCACGCCGGAGACCAAGGGCGCTCGGGAAAAGGGTG
ACTTGGACGATTTGGCAGGCACCAATTCCTTGAAAAGCAATGCATCTCGC
GTTTCTTACGATATTGAACACTTGCTCTACTACTCCATGAGTCCGCACTC
GTGGACCCTGCCCACCGACTGGCAAAAGATGCAGGAGACAGCGCCCTCGA
TTCTGCGCAACAAGGATCTGCAGGATGAGAGCCAGCGCTTCGATGGTGAT
AAGTATCTGGCCAGCATTAAGACGGCCGCCAAGCGAGACATTGTGGCTGC
CGATGAGGTCGAGACTCTGGACGAATAAAAGCTTTCTAGACCAT
BS15634.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:35:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mxt-RE | 1962 | CG2950-PE | 1..1962 | 17..1978 | 9810 | 100 | Plus |
| mxt-RC | 1962 | CG2950-PC | 1..1962 | 17..1978 | 9810 | 100 | Plus |
| mxt-RA | 1962 | CG2950-PA | 1..1962 | 17..1978 | 9810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mxt-RE | 2351 | CG2950-RE | 246..2208 | 17..1979 | 9815 | 100 | Plus |
| mxt-RC | 2328 | CG2950-RC | 223..2185 | 17..1979 | 9815 | 100 | Plus |
| mxt-RA | 2336 | CG2950-RA | 231..2193 | 17..1979 | 9815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4844166..4844646 | 1354..874 | 2405 | 100 | Minus |
| 2L | 23513712 | 2L | 4845642..4846043 | 418..17 | 2010 | 100 | Minus |
| 2L | 23513712 | 2L | 4843718..4844111 | 1745..1352 | 1970 | 100 | Minus |
| 2L | 23513712 | 2L | 4845254..4845577 | 740..417 | 1620 | 100 | Minus |
| 2L | 23513712 | 2L | 4843539..4843658 | 1865..1746 | 600 | 100 | Minus |
| 2L | 23513712 | 2L | 4842233..4842349 | 1979..1863 | 585 | 100 | Minus |
| 2L | 23513712 | 2L | 4845087..4845162 | 812..737 | 380 | 100 | Minus |
| 2L | 23513712 | 2L | 4844712..4844774 | 873..811 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:35:55 has no hits.
BS15634.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:36 Download gff for
BS15634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2950-RC | 223..2182 | 17..1976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:18 Download gff for
BS15634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2950-RA | 231..2190 | 17..1976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:23 Download gff for
BS15634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mxt-RA | 231..2190 | 17..1976 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:23 Download gff for
BS15634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4842236..4842347 | 1865..1976 | 100 | <- | Minus |
| 2L | 4843540..4843658 | 1746..1864 | 100 | <- | Minus |
| 2L | 4843718..4844111 | 1352..1745 | 100 | <- | Minus |
| 2L | 4844169..4844646 | 874..1351 | 100 | <- | Minus |
| 2L | 4844712..4844772 | 813..873 | 100 | <- | Minus |
| 2L | 4845087..4845158 | 741..812 | 100 | <- | Minus |
| 2L | 4845254..4845575 | 419..740 | 100 | <- | Minus |
| 2L | 4845642..4846043 | 17..418 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:18 Download gff for
BS15634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4842236..4842347 | 1865..1976 | 100 | <- | Minus |
| arm_2L | 4843540..4843658 | 1746..1864 | 100 | <- | Minus |
| arm_2L | 4843718..4844111 | 1352..1745 | 100 | <- | Minus |
| arm_2L | 4844169..4844646 | 874..1351 | 100 | <- | Minus |
| arm_2L | 4844712..4844772 | 813..873 | 100 | <- | Minus |
| arm_2L | 4845087..4845158 | 741..812 | 100 | <- | Minus |
| arm_2L | 4845254..4845575 | 419..740 | 100 | <- | Minus |
| arm_2L | 4845642..4846043 | 17..418 | 100 | | Minus |
BS15634.pep Sequence
Translation from 16 to 1977
> BS15634.pep
MAHTHLGRAVKNIEAPRPLKTQSRSSLKNSYLVIEELIQLIDNVTVGLQS
CNTTPESITLLLHNLRVHGPQLEAVSKDTLDRAFVVFRNASQDERLNITT
RLKLLELIELRAKSWDNDDTIAYYKSKQQISNVELPSEYQYDAGVQPGAF
STSPTFGVSGGVGGVNDGAAAAAAAVFNAASAAAAAQAAAIAAVGTSNQQ
HMLLPPGEVIRNSGKFPKPTKIPGKTYCKDEVVIRNADSGKVMGIKGRRV
HMIEELSETIISFQRVNPGAKERLVQITGPAEDKINYAKQLMEDTIRRNA
SPVRLEPAPAVGGSCSSLNSSNSDDAIVQPRTPTGSSLANRLSFNSAQNF
MTATAAAQQISQQMHHQTHHLQHQQQQQVAAVAAAAAAAAHAQATAAAGK
VLRPNQQLLMHSYSTNDASVGEYKFTVNVGQHLIKITGDCCELVRVAKLV
LDDYFSSSEFLASIEAGAAFDGTSLVTTPSTPLPGAGPPQFWLPGTDSGI
GLNCVVSSSANNNGEGDDEVFAEPSNGGSSTSNQNGLARSRRSHFSRKES
TPETKGAREKGDLDDLAGTNSLKSNASRVSYDIEHLLYYSMSPHSWTLPT
DWQKMQETAPSILRNKDLQDESQRFDGDKYLASIKTAAKRDIVAADEVET
LDE*
BS15634.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:34:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mxt-PE | 653 | CG2950-PE | 1..653 | 1..653 | 3319 | 100 | Plus |
| mxt-PC | 653 | CG2950-PC | 1..653 | 1..653 | 3319 | 100 | Plus |
| mxt-PA | 653 | CG2950-PA | 1..653 | 1..653 | 3319 | 100 | Plus |
| mxt-PB | 653 | CG2950-PB | 1..653 | 1..653 | 3319 | 100 | Plus |
| mxt-PG | 631 | CG2950-PG | 1..631 | 1..653 | 3174 | 96.6 | Plus |
