Clone Sequence Records
BS15639.complete Sequence
2288 bp assembled on 2009-12-07
GenBank Submission: KX805600
> BS15639.complete
GAAGTTATCAGTCGACATGGTGACTGGAGACCCGGTAGCGACAAAGACCC
CAAACGCAGCGGATTCGGATGATAATGACTTTACCGCATCCATGTCGCAC
CTGACCATTGGCCAGCAAATCCAGGAGCTGTCCAAGCAACTGCAGAACAC
GAAGGAGGAGCTGCACCAGCAGGTGCGCGACAAGCACGGAGCTCTACTGC
AGCAGGCCACCCACGCTGGGCGCTTCGATGCGGCTTTAAACGCGCTCGCC
GAGGATGTGCAGCGGGTCAGGGAAACTGGGCACCGGCTGAAGAACCAGGT
GGACACGCAGTACCAGCAGGTGGAGAACCAAACGCAAGTGCTAGGGCGTC
TGCACGATGTCAGTCACCTACTCCGCTCGGCTGGAACATTGCTGAGCCTC
ACGGCCAAACTAAAAGCGACCAAGGATGTCCTACGCCTGGCCGAAATCCA
CTTTGAGTTGGGCCAACTCATCGAAGATAAGGAGCTAAAGGACATTGATT
TTATCCAGCAGGAGCGAGCTTATGTGATCAGCTCTGCTCAGAAGATAAGG
AACCTCACGCAGATGCAGTTGGTCACTGGGCTCCAGGAGCGCAATGAAAA
CCAAGTGGTTAATGCCTTGAAGATCTTTATGAATTTCAATACGCTGGAAA
AATCGCTGGATAACCTATTGGCCACCTTTATTGCCGACATGGAGCAATCT
CTGAAAGAGTGCTTTGCTGGCAACGATATATCTGTGCTGAACAAGTCCCC
GACGCACAATGTGAGCAAACCTGCTCCCTCGAGGGGACCAGGAAAAACTC
CCCAGTTGACAACCACTCAAAACTTCCGTGCCAAGTTCTGGAAGTCTCTT
CATTGGCTGCTCTATGATGAACTTTTTGAGACTTGCACGCAAATCAAGCT
GCTGAAAACGGCTCTCGAGCAGATCAACCAGTTTGGCTATACATCAGAAT
CATCGGATCAGTGCATTCCGCAGCGTTTTTGGCAGCAGGTGCAGCAGCTC
CTGCGAAAATCCTTTGACGAATGCCCCCAGCATGTTACGCAGACCCTTCA
GGAGGGGCTCTCAAAGCTCCTGACCTCCGCTCGTGGCTTGGAGCAGCGTC
TGCATGGCGAGTTTCAGTTTGACAACGAACTATTTGCTCCCCTGGAAGTG
GGTTACGTTAGCAAGTGTGCTGCCAACTTTAAGGCATGTCTGGCGGGAGT
CGATTTGCCCGGCAACGAAACGGTGGACAACTTTATTCGTGTGGCATCAA
CGGAGCTCAGTGCTGCTTTGATCGATTCCCGTCTCACGAATGCCATAGCA
AATGTATTTGCGGCCTGTGGAAAAGAGTTGTGCACAAAACTAGAGGCTCA
AATCAAGCTGGGAGCTGATTCCAAGCAGGTCGTGGATCTGCCCAATCTGC
AGCAGCAGCAAAACACCCAGCTGGCGAATGTTCTGTTCTACTATAAGGAT
TCAGTGCGTCGCATGCTCAGTGATCTTCATGTGCACTTTGAAAAGACACC
GGGAACAGCTAGGGAGATTATATCCCGATCCTTGGAACAGGCTGATTTAC
TGATCGGCACCATTCTACAGCAGATAATGGAGTCGATTATCACGACCATT
AGCATCATTGTATTGAGTATGCACAGGGAGCCGGGATTGAATTCGGAGAG
GATGTCTACCACAGGTCCGTCGATGTACATGAAGGAACTGCAGGAGTTCG
TCAACCGATCCTGGTCGCATCACATCGCCCTGTTCGATGACAAGCAGATG
ACGAAAAAGTGCGGACACGAGTTGGCCAAACGTTGCATTGAGCTCTTCCT
GCACAATGTGTGCATTCTGCGACCTTTAAGCTCCTGCGGAAGGCAGCGTT
TGAAGCAAGACTGTCAACACATGGAACAGGCGTTGAAACCTCTTTGCCCA
AATCTCGCCGAGCTGGGAAAGCCGTCGCGTCTGCTAAGAGCCATGTCCTT
GCTGATCGTCCAAACGGCCGAGGAGCTGGTCAAGCAGACAATCGGCGAGG
ACTCTCTAGTGCCCAGTTACATAGTGCTGTTGCTGCTCTTCGGACACGCT
GGAGCAGATCTGCAGTCGCCACACACGACGGCCAACTGGTCCAATGAGCG
GCTGATCGAATGGCTGGATGGGCACACGGCTGAACGGGAGAAACTAGAGC
TGATCTCGGGGGCACTGCAACGGTATCGGGACAATGCCAGGCGAAAGAAC
ATTCAGCAGTACGACGAAGTTTACCCCATGATGGTAGATTATTTTGAACA
GGCCTTAAAGGCACTTCCATAAAAGCTTTCTAGACCAT
BS15639.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:52:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fws-RI | 2256 | CG6549-PI | 1..2256 | 17..2272 | 11280 | 100 | Plus |
| fws-RH | 2256 | CG6549-PH | 1..2256 | 17..2272 | 11280 | 100 | Plus |
| fws-RD | 2256 | CG6549-PD | 1..2256 | 17..2272 | 11280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fws-RI | 2398 | CG6549-RI | 49..2306 | 16..2273 | 11290 | 100 | Plus |
| fws-RH | 2447 | CG6549-RH | 98..2355 | 16..2273 | 11290 | 100 | Plus |
| fws-RD | 2424 | CG6549-RD | 75..2332 | 16..2273 | 11290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17479171..17480244 | 1694..621 | 5370 | 100 | Minus |
| 2L | 23513712 | 2L | 17480296..17480902 | 622..16 | 3035 | 100 | Minus |
| 2L | 23513712 | 2L | 17478534..17479115 | 2273..1692 | 2910 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:52:00 has no hits.
BS15639.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:24 Download gff for
BS15639.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fws-RA | 112..2365 | 17..2270 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:57 Download gff for
BS15639.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fws-RC | 80..2333 | 17..2270 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:00 Download gff for
BS15639.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fws-RA | 112..2365 | 17..2270 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:41 Download gff for
BS15639.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fws-RD | 76..2329 | 17..2270 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:41 Download gff for
BS15639.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17478537..17479113 | 1694..2270 | 100 | <- | Minus |
| 2L | 17479172..17480242 | 623..1693 | 100 | <- | Minus |
| 2L | 17480296..17480901 | 17..622 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:57 Download gff for
BS15639.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17478537..17479113 | 1694..2270 | 100 | <- | Minus |
| arm_2L | 17479172..17480242 | 623..1693 | 100 | <- | Minus |
| arm_2L | 17480296..17480901 | 17..622 | 100 | | Minus |
BS15639.3prime Sequence
849 bp (811 high quality bases) assembled on 2006-12-21
> BS15639.3prime
ATGGTCTAGAAAGCTTTTACCGTTTTGCCTTTAAGGCCTGTTCAAAATAA
TCTACCATCATGGGGTAAACTTCGTCGTACTGCTGAATGTTCTTTCTCCT
GGCATTGTCCCGATACCGTTGCAGTGCCCCCGAGATCAGCTCTAGTTTCT
CCCGTTCAGCCGTGTGCCCATCCAGCCATTCGATCAGCCGCTCATTGGAC
CAGTTGGCCGTCGTGTGTGGCGACTGCAGATCTGCTCCAGCGTGTCCGAA
GAGCAGCAACAGCACTATGTAACTGGGCACTAGAGAGTCCTCGCCGATTG
TCTGCTTGACCAGCTCCTCGGCCGTTTGGACGATCAGCAAGGACATGGCT
CTTAGCAGACGCGACGGCTTTCCCAGCTCGGCGAGATTTGGGCAAAGAGG
TTTCAACGCCTGTTCCATGTGTTGACAGTCTTGCTTCAAACGCTGCCTTC
CGCAGGAGCTTAAAGGTCGCAGAATGCACACATTGTGCAGGAAGAGCTCA
ATGCAACGTTTGGCCAACTCGTGTCCGCACTTTTTCGTCATCTGCTTGTC
ATCGAACAGGGCGATGTGATGCGACCAGGATCGGTTGACGAACTCCTGCA
GTTCCTTCATGTACATCGACGGACCTGTGGTAGACATCCTCTCCGAATTC
AATCCCGGCTCCCTGTGCATACTCAATACAATGATGCTAATGGTCGTGAT
AATCGACTCCATTATCTGCTGTAGAATGGTGCCGATCAGTAAATCAGCCT
GTTCCAAGGATCGGGATATAATCTCCCTAGCTGTTCCCGGTGTCTTTTCA
AAGTGCACATGAAGATCACTGAGCATGCGACGCACTGAATCCTTATAGT
BS15639.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6549-PC | 2256 | fws-RC | 1424..2247 | 849..26 | 4095 | 99.8 | Minus |
| CG6549-PA | 2256 | fws-RA | 1424..2247 | 849..26 | 4095 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 03:21:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fws-RI | 2398 | CG6549-RI | 1473..2296 | 849..26 | 4105 | 99.9 | Minus |
| fws-RH | 2447 | CG6549-RH | 1522..2345 | 849..26 | 4105 | 99.9 | Minus |
| fws-RD | 2424 | CG6549-RD | 1499..2322 | 849..26 | 4105 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 03:21:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17478544..17479115 | 26..597 | 2845 | 99.8 | Plus |
| 2L | 23513712 | 2L | 17479171..17479425 | 595..849 | 1275 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 03:21:22 has no hits.
BS15639.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:38 Download gff for
BS15639.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fws-PC | 1424..2247 | 26..849 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:11:09 Download gff for
BS15639.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6549-PA | 1424..2247 | 26..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 20:47:00 Download gff for
BS15639.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fws-RC | 1503..2326 | 26..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 05:20:07 Download gff for
BS15639.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fws-RD | 1499..2322 | 26..849 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 05:20:07 Download gff for
BS15639.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17478544..17479113 | 26..595 | 99 | <- | Plus |
| 2L | 17479172..17479425 | 596..849 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 20:47:00 Download gff for
BS15639.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17478544..17479113 | 26..595 | 99 | <- | Plus |
| arm_2L | 17479172..17479425 | 596..849 | 100 | | Plus |
BS15639.5prime Sequence
950 bp (717 high quality bases) assembled on 2006-12-21
> BS15639.5prime
GAAGTTATCCGTCGACATGGTGACTGGAGACCCGGTAGCGACAAAGACCC
CAAACGCAGCGGATTCGGATGATAATGACTTTACCGCATCCATGTCGCAC
CTGACCATTGGCCAGCAAATCCAGGAGCTGTCCAAGCAACTGCAGAACAC
GAAGGAGGAGCTGCACCAGCAGGTGCGCGACAAGCACGGAGCTCTACTGC
AGCAGGCCACCCACGCTGGGCGCTTCGATGCGGCTTTAAACGCGCTCGCC
GAGGATGTGCAGCGGGTCAGGGAAACTGGGCACCGGCTGAAGAACCAGGT
GGACACGCAGTACCAGCAGGTGGAGAACCAAACGCAAGTGCTAGGGCGTC
TGCACGATGTCAGTCACCTACTCCGCTCGGCTGGAACATTGCTGAGCCTC
ACGGCCAAACTAAAAGCGACCAAGGATGTCCTACGCCTGGCCGAAATCCA
CTTTGAGTTGGGCCAACTCATCGAAGATAAGGAGCTAAAGGACATTGATT
TTATCCAGCAGGAGCGAGCTTATGTGATCAGCTCTGCTCAGAAGATAAGG
AACCTCACGCAGATGCAGTTGGTCACTGGGCTCCAGGAGCGCAATGAAAA
CCAAGTGGTTAATGCCTTGAAGATCTTTATGAATTTCAATACGCTGGAAA
AATCGCTGGATAACCTATTGGCCACCTTTATTGCCGACATGGAGCAATCT
CTGAAAGAGTGCTTTGCTGGNCACGATATATCTGTGCTGAACAAGTCCCC
GACGCACAATGTGAGCAAACCTGCTCCCTCGAGGGGACCAGGAAAAACTC
CCCAGTTGAACACCACTCAAAACTTCCGTGCCNAGTTCTGGAAGTCTCTT
CATTGGCTGCTCTATGATGAACTTTTTGAGACTTGCACGCAAATCAAGCT
GCTGAAAACGGCTCTCGAGCAGATCAAACAGTTTGGCTATACATCAGAAT
BS15639.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6549-PC | 2256 | fws-RC | 1..934 | 17..950 | 4532 | 99.3 | Plus |
| CG6549-PA | 2256 | fws-RA | 1..934 | 17..950 | 4532 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 07:26:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fws-RI | 2398 | CG6549-RI | 49..983 | 16..950 | 4593 | 99.4 | Plus |
| fws-RH | 2447 | CG6549-RH | 98..1032 | 16..950 | 4593 | 99.4 | Plus |
| fws-RD | 2424 | CG6549-RD | 75..1009 | 16..950 | 4593 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 07:26:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17480296..17480902 | 622..16 | 3035 | 100 | Minus |
| 2L | 23513712 | 2L | 17479915..17480244 | 950..621 | 1568 | 98.2 | Minus |
Blast to na_te.dros performed on 2015-02-08 07:26:33 has no hits.
BS15639.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:39 Download gff for
BS15639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fws-PC | 1..934 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:11:11 Download gff for
BS15639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6549-PA | 1..934 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 22:24:19 Download gff for
BS15639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fws-RC | 72..1013 | 8..950 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 08:22:18 Download gff for
BS15639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fws-RD | 68..1009 | 8..950 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 08:22:18 Download gff for
BS15639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17479915..17480242 | 623..950 | 98 | <- | Minus |
| 2L | 17480296..17480909 | 8..622 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 22:24:19 Download gff for
BS15639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17479915..17480242 | 623..950 | 98 | <- | Minus |
| arm_2L | 17480296..17480909 | 8..622 | 99 | | Minus |
BS15639.pep Sequence
Translation from 16 to 2271
> BS15639.pep
MVTGDPVATKTPNAADSDDNDFTASMSHLTIGQQIQELSKQLQNTKEELH
QQVRDKHGALLQQATHAGRFDAALNALAEDVQRVRETGHRLKNQVDTQYQ
QVENQTQVLGRLHDVSHLLRSAGTLLSLTAKLKATKDVLRLAEIHFELGQ
LIEDKELKDIDFIQQERAYVISSAQKIRNLTQMQLVTGLQERNENQVVNA
LKIFMNFNTLEKSLDNLLATFIADMEQSLKECFAGNDISVLNKSPTHNVS
KPAPSRGPGKTPQLTTTQNFRAKFWKSLHWLLYDELFETCTQIKLLKTAL
EQINQFGYTSESSDQCIPQRFWQQVQQLLRKSFDECPQHVTQTLQEGLSK
LLTSARGLEQRLHGEFQFDNELFAPLEVGYVSKCAANFKACLAGVDLPGN
ETVDNFIRVASTELSAALIDSRLTNAIANVFAACGKELCTKLEAQIKLGA
DSKQVVDLPNLQQQQNTQLANVLFYYKDSVRRMLSDLHVHFEKTPGTARE
IISRSLEQADLLIGTILQQIMESIITTISIIVLSMHREPGLNSERMSTTG
PSMYMKELQEFVNRSWSHHIALFDDKQMTKKCGHELAKRCIELFLHNVCI
LRPLSSCGRQRLKQDCQHMEQALKPLCPNLAELGKPSRLLRAMSLLIVQT
AEELVKQTIGEDSLVPSYIVLLLLFGHAGADLQSPHTTANWSNERLIEWL
DGHTAEREKLELISGALQRYRDNARRKNIQQYDEVYPMMVDYFEQALKAL
P*
BS15639.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:54:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fws-PI | 751 | CG6549-PI | 1..751 | 1..751 | 3842 | 100 | Plus |
| fws-PH | 751 | CG6549-PH | 1..751 | 1..751 | 3842 | 100 | Plus |
| fws-PD | 751 | CG6549-PD | 1..751 | 1..751 | 3842 | 100 | Plus |
| fws-PA | 751 | CG6549-PA | 1..751 | 1..751 | 3842 | 100 | Plus |
| fws-PC | 751 | CG6549-PC | 1..751 | 1..751 | 3842 | 100 | Plus |
