Clone BS15640 Report

Search the DGRC for BS15640

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:156
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCTPsyn-RA
Protein status:BS15640.pep: full length peptide match
Sequenced Size:1916

Clone Sequence Records

BS15640.complete Sequence

1916 bp assembled on 2009-12-07

GenBank Submission: KX805428

> BS15640.complete
GAAGTTATCAGTCGACATGAAATACATCCTGGTAACTGGTGGCGTCATTA
GTGGCGTGGGAAAAGGAGTGATTGCCTCCTCGTTCGGAACGCTTTTGAAA
TCCTGTGGTCTGGATGTAACCTCGATCAAGATTGACCCCTATATCAATAT
AGATGCTGGAACCTTTTCGCCTTATGAGCATGGCGAGGTTTACGTTTTGG
ACGATGGCGCCGAGGTGGATCTGGATCTGGGAAACTATGAACGGTTTTTG
GATGTTACCCTGCATCGGGACAACAACATAACCACCGGAAAAATTTACAA
GTTGGTCATTGAGAAGGAGCGCACTGGCGAGTACTTGGGCAAAACGGTTC
AAGTTGTCCCACACATCACTGATGCCATTCAGGAATGGGTGGAGCGCGTG
GCCCAGACACCCGTTCAGGGATCTTCAAAGCCACAGGTGTGCATCGTGGA
ATTGGGAGGAACGATTGGTGACATCGAAGGCATGCCTTTCGTAGAGGCCT
TCCGTCAGTTTCAGTTCCGCGTAAAGAGAGAGAACTTCTGTTTGGCCCAT
GTGTCGCTGGTTCCGTTGCCAAAGGCTACCGGAGAACCCAAGACCAAGCC
CACACAAAGTTCGGTCAGAGAACTGAGAGGATGTGGCCTGAGTCCCGATT
TGATTGTCTGCCGATCGGAGAAACCCATTGGACTGGAGGTCAAGGAGAAG
ATCAGCAACTTTTGTCATGTGGGGCCGGATCAGGTGATATGCATCCACGA
TTTGAACTCCATTTATCATGTTCCGCTGCTGATGGAGCAGAATGGTGTTA
TTGAATACCTAAATGAGCGCCTACAGCTTAATATCGACATGAGCAAGAGG
ACCAAATGCTTGCAGCAATGGCGAGATTTGGCGCGTCGAACGGAGACCGT
TCGCCGTGAAGTTTGCATCGCCGTCGTGGGAAAGTACACCAAGTTCACGG
ATTCGTACGCCTCCGTAGTTAAAGCCCTGCAACATGCCGCCCTGGCAGTG
AATCGCAAACTGGAACTGGTCTTTATCGAGTCGTGCCTGCTGGAGGAGGA
AACTTTGCATTCTGAGCCGAGCAAGTACCACAAGGAGTGGCAGAAGCTAT
GCGATAGCCATGGCATCCTAGTCCCCGGTGGATTCGGTTCCCGTGGAATG
GAGGGCAAGATTCGTGCATGCCAATGGGCGCGAGAGAATCAAAAGCCATT
GCTTGGCATCTGCTTGGGTCTGCAAGCGGCGGTCATTGAATTCGCACGAA
ATAAACTTGGTCTCAAGGATGCAAACACCACAGAAATCGATCCGAACACA
GCTAATGCCTTGGTCATCGATATGCCAGAGCATCACACGGGTCAATTGGG
CGGCACTATGCGCTTGGGCAAGCGAATAACTGTTTTCTCTGATGGTCCTA
GTGTCATTCGCCAGTTGTATGGCAATCCGAAAAGCGTGCAGGAGCGTCAT
CGGCATCGTTACGAGGTTAATCCCAAATACGTGCATCTGCTGGAAGAGCA
AGGCATGCGATTTGTGGGCACCGACGTCGACAAAACTAGGATGGAAATCA
TTGAGCTCAGCGGTCATCCCTACTTTGTTGCCACCCAATATCATCCAGAG
TACTTGTCGCGGCCTCTGAAGCCGTCGCCTCCTTTCCTCGGCCTGATCCT
GGCCTCAGTGGATCGATTGAACCAATATATTCAGCGCGGTTGCCGCCTGT
CGCCCCGCCAGCTATCCGACGCATCCTCGGATGAGGAGGACAGTGTTGTG
GGCTTGGCCGGAGCAACAAAATCGCTGAGCTCCTTGAAAATTCCCATTAC
ACCCACAAATGGAATATCAAAAAGTTGCAATGGTAGCATAAGCACTTCCG
ACAGCGAAGGTGCCTGCGGAGGCGTTGATCCTACCAATGGCCATAAGTAA
AAGCTTTCTAGACCAT

BS15640.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
CTPsyn-RC 1884 CG45070-PC 1..1884 17..1900 9420 100 Plus
CTPsyn-RA 1884 CG45070-PA 1..1884 17..1900 9420 100 Plus
CTPsyn-RB 1872 CG45070-PB 155..1872 183..1900 8590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:57:51
Subject Length Description Subject Range Query Range Score Percent Strand
CTPsyn-RC 2627 CG45070-RC 438..2322 17..1901 9425 100 Plus
CTPsyn-RA 2406 CG45070-RA 217..2101 17..1901 9425 100 Plus
CTPsyn-RB 2423 CG45070-RB 400..2118 183..1901 8595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15111653..15112698 856..1901 5230 100 Plus
3L 28110227 3L 15111085..15111588 352..855 2520 100 Plus
3L 28110227 3L 15110815..15110986 182..353 860 100 Plus
3L 28110227 3L 15098351..15098525 17..191 845 98.9 Plus
Blast to na_te.dros performed on 2014-11-28 04:57:49 has no hits.

BS15640.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:21 Download gff for BS15640.complete
Subject Subject Range Query Range Percent Splice Strand
CG6854-RC 1..1884 17..1900 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:33:11 Download gff for BS15640.complete
Subject Subject Range Query Range Percent Splice Strand
CG6854-RC 215..2096 17..1898 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:06 Download gff for BS15640.complete
Subject Subject Range Query Range Percent Splice Strand
CTPsyn-RC 217..2098 17..1898 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:17 Download gff for BS15640.complete
Subject Subject Range Query Range Percent Splice Strand
CG6854-RC 215..2096 17..1898 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:01:21 Download gff for BS15640.complete
Subject Subject Range Query Range Percent Splice Strand
CTPsyn-RA 217..2098 17..1898 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:01:21 Download gff for BS15640.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15098351..15098516 17..182 100 -> Plus
3L 15110816..15110986 183..353 100 -> Plus
3L 15111087..15111588 354..855 100 -> Plus
3L 15111653..15112695 856..1898 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:06 Download gff for BS15640.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15091451..15091616 17..182 100 -> Plus
arm_3L 15103916..15104086 183..353 100 -> Plus
arm_3L 15104187..15104688 354..855 100 -> Plus
arm_3L 15104753..15105795 856..1898 100   Plus

BS15640.3prime Sequence

765 bp (742 high quality bases) assembled on 2006-12-21

> BS15640.3prime
ATGGTCTAGAAAGCTTTTCCCTTTGGAGATTGGTAGGATCAACGCCTCCG
CAGGCACCTTCGCTGTCGGAAGTGCTTATGCTACCATTGCAACTTTTTGA
TATTCCATTTGTGGGTGTAATGGGAATTTTCAAGGAGCTCAGCGATTTTG
TTGCTCCGGCCAAGCCCACAACACTGTCCTCCTCATCCGAGGATGCGTCG
GATAGCTGGCGGGGCGACAGGCGGCAACCGCGCTGAATATATTGGTTCAA
TCGATCCACTGAGGCCAGGATCAGGCCGAGGAAAGGAGGCGACGGCTTCA
GAGGCCGCGACAAGTACTCTGGATGATATTGGGTGGCAACAAAGTAGGGA
TGACCGCTGAGCTCAATGATTTCCATCCTAGTTTTGTCGACGTCGGTGCC
CACAAATCGCATGCCTTGCTCTTCCAGCAGATGCACGTATTTGGGATTAA
CCTCGTAACGATGCCGATGACGCTCCTGCACGCTTTTCGGATTGCCATAC
AACTGGCGAATGACACTAGGACCATCAGAGAAAACAGTTATTCGCTTGCC
CAAGCGCATAGTGCCGCCCAATTGACCCGTGTGATGCTCTGGCATATCGA
TGACCAAGGCATTAGCTGTGTTCGGATCGATTTCTGTGGTGTTTGCATCC
TTGAGACCAAGTTTATTTCGTGCGAATTCAATGACCGCCGCTTGCAGACC
CAAGCAGATGCCAAGCAATGGCTTTTGATTCTCTCGCGCCCATTGGCATG
CACGAATCTTGCCCT

BS15640.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG6854-PC 1884 CG6854-RC 1136..1872 765..29 3685 100 Minus
CG6854-PB 1872 CG6854-RB 1124..1860 765..29 3685 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:19:44
Subject Length Description Subject Range Query Range Score Percent Strand
CTPsyn-RC 2627 CG45070-RC 1573..2309 765..29 3685 100 Minus
CTPsyn-RB 2423 CG45070-RB 1369..2105 765..29 3685 100 Minus
CTPsyn-RA 2406 CG45070-RA 1352..2088 765..29 3685 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15111949..15112685 765..29 3685 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:19:40 has no hits.

BS15640.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:40 Download gff for BS15640.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6854-PC 1136..1884 17..765 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:11:13 Download gff for BS15640.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6854-PB 1124..1872 17..765 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:27:49 Download gff for BS15640.3prime
Subject Subject Range Query Range Percent Splice Strand
CTPsyn-RC 1352..2101 16..765 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:51:26 Download gff for BS15640.3prime
Subject Subject Range Query Range Percent Splice Strand
CTPsyn-RA 1352..2101 16..765 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:51:26 Download gff for BS15640.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15111949..15112686 27..765 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:27:49 Download gff for BS15640.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15105049..15105786 27..765 99 -> Minus

BS15640.5prime Sequence

889 bp (782 high quality bases) assembled on 2006-12-21

> BS15640.5prime
GAAGTTATCCTTCGACATGAAATACATCCTGGTAACTGGTGGCGTCATTA
GTGGCGTGGGAAAAGGAGTGATTGCCTCCTCGTTCGGAACGCTTTTGAAA
TCCTGTGGTCTGGATGTAACCTCGATCAAGATTGACCCCTATATCAATAT
AGATGCTGGAACCTTTTCGCCTTATGAGCATGGCGAGGTTTACGTTTTGG
ACGATGGCGCCGAGGTGGATCTGGATCTGGGAAACTATGAACGGTTTTTG
GATGTTACCCTGCATCGGGACAACAACATAACCACCGGAAAAATTTACAA
GTTGGTCATTGAGAAGGAGCGCACTGGCGAGTACTTGGGCAAAACGGTTC
AAGTTGTCCCACACATCACTGATGCCATTCAGGAATGGGTGGAGCGCGTG
GCCCAGACACCCGTTCAGGGATCTTCAAAGCCACAGGTGTGCATCGTGGA
ATTGGGAGGAACGATTGGTGACATCGAAGGCATGCCTTTCGTAGAGGCCT
TCCGTCAGTTTCAGTTCCGCGTAAAGAGAGAGAACTTCTGTTTGGCCCAT
GTGTCGCTGGTTCCGTTGCCAAAGGCTACCGGAGAACCCAAGACCAAGCC
CACACAAAGTTCGGTCAGAGAACTGAGAGGATGTGGCCTGAGTCCCGATT
TGATTGTCTGCCGATCGGAGAAACCCATTGGACTGGAGGTCAAGGAGAAG
ATCAGCAACTTTTGTCATGTGGGGCCGGATCANGTGATATGCATCCACGA
TTTGAACTCCATTTATCATGTTCCGCTGCTGATGGAGCAGAATGGTGTTA
TTGAATACCTAAATGAGCGCCTACAGCTTAATATCGACATGAGCAAGAGG
ACCAAATGCTTGCAGCAATGGCGAGATTTGGCGCGTCCA

BS15640.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6854-PC 1884 CG6854-RC 1..871 17..887 4336 99.8 Plus
CG6854-PB 1872 CG6854-RB 155..859 183..887 3506 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
CTPsyn-RC 2627 CG45070-RC 438..1308 17..887 4344 99.9 Plus
CTPsyn-RA 2406 CG45070-RA 217..1087 17..887 4344 99.9 Plus
CTPsyn-RB 2423 CG45070-RB 400..1104 183..887 3514 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 00:07:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15111085..15111588 352..855 2509 99.8 Plus
3L 28110227 3L 15110815..15110986 182..353 860 100 Plus
3L 28110227 3L 15098351..15098525 17..191 845 98.9 Plus
Blast to na_te.dros performed on 2015-02-06 00:07:12 has no hits.

BS15640.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:41 Download gff for BS15640.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6854-PC 1..871 17..888 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:11:14 Download gff for BS15640.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6854-PC 1..871 17..888 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 03:34:55 Download gff for BS15640.5prime
Subject Subject Range Query Range Percent Splice Strand
CTPsyn-RC 217..1087 17..888 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:35:15 Download gff for BS15640.5prime
Subject Subject Range Query Range Percent Splice Strand
CTPsyn-RA 217..1087 17..888 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 00:35:15 Download gff for BS15640.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15098351..15098516 17..182 100 -> Plus
3L 15110816..15110986 183..353 100 -> Plus
3L 15111087..15111588 354..855 99 -> Plus
3L 15111653..15111684 856..888 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 03:34:55 Download gff for BS15640.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15091451..15091616 17..182 100 -> Plus
arm_3L 15103916..15104086 183..353 100 -> Plus
arm_3L 15104187..15104688 354..855 99 -> Plus
arm_3L 15104753..15104784 856..888 96   Plus

BS15640.pep Sequence

Translation from 16 to 1899

> BS15640.pep
MKYILVTGGVISGVGKGVIASSFGTLLKSCGLDVTSIKIDPYINIDAGTF
SPYEHGEVYVLDDGAEVDLDLGNYERFLDVTLHRDNNITTGKIYKLVIEK
ERTGEYLGKTVQVVPHITDAIQEWVERVAQTPVQGSSKPQVCIVELGGTI
GDIEGMPFVEAFRQFQFRVKRENFCLAHVSLVPLPKATGEPKTKPTQSSV
RELRGCGLSPDLIVCRSEKPIGLEVKEKISNFCHVGPDQVICIHDLNSIY
HVPLLMEQNGVIEYLNERLQLNIDMSKRTKCLQQWRDLARRTETVRREVC
IAVVGKYTKFTDSYASVVKALQHAALAVNRKLELVFIESCLLEEETLHSE
PSKYHKEWQKLCDSHGILVPGGFGSRGMEGKIRACQWARENQKPLLGICL
GLQAAVIEFARNKLGLKDANTTEIDPNTANALVIDMPEHHTGQLGGTMRL
GKRITVFSDGPSVIRQLYGNPKSVQERHRHRYEVNPKYVHLLEEQGMRFV
GTDVDKTRMEIIELSGHPYFVATQYHPEYLSRPLKPSPPFLGLILASVDR
LNQYIQRGCRLSPRQLSDASSDEEDSVVGLAGATKSLSSLKIPITPTNGI
SKSCNGSISTSDSEGACGGVDPTNGHK*

BS15640.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:33
Subject Length Description Subject Range Query Range Score Percent Strand
CTPsyn-PC 627 CG45070-PC 1..627 1..627 3279 100 Plus
CTPsyn-PA 627 CG45070-PA 1..627 1..627 3279 100 Plus
CTPsyn-PB 623 CG45070-PB 53..623 57..627 2991 100 Plus