Clone Sequence Records
BS15640.complete Sequence
1916 bp assembled on 2009-12-07
GenBank Submission: KX805428
> BS15640.complete
GAAGTTATCAGTCGACATGAAATACATCCTGGTAACTGGTGGCGTCATTA
GTGGCGTGGGAAAAGGAGTGATTGCCTCCTCGTTCGGAACGCTTTTGAAA
TCCTGTGGTCTGGATGTAACCTCGATCAAGATTGACCCCTATATCAATAT
AGATGCTGGAACCTTTTCGCCTTATGAGCATGGCGAGGTTTACGTTTTGG
ACGATGGCGCCGAGGTGGATCTGGATCTGGGAAACTATGAACGGTTTTTG
GATGTTACCCTGCATCGGGACAACAACATAACCACCGGAAAAATTTACAA
GTTGGTCATTGAGAAGGAGCGCACTGGCGAGTACTTGGGCAAAACGGTTC
AAGTTGTCCCACACATCACTGATGCCATTCAGGAATGGGTGGAGCGCGTG
GCCCAGACACCCGTTCAGGGATCTTCAAAGCCACAGGTGTGCATCGTGGA
ATTGGGAGGAACGATTGGTGACATCGAAGGCATGCCTTTCGTAGAGGCCT
TCCGTCAGTTTCAGTTCCGCGTAAAGAGAGAGAACTTCTGTTTGGCCCAT
GTGTCGCTGGTTCCGTTGCCAAAGGCTACCGGAGAACCCAAGACCAAGCC
CACACAAAGTTCGGTCAGAGAACTGAGAGGATGTGGCCTGAGTCCCGATT
TGATTGTCTGCCGATCGGAGAAACCCATTGGACTGGAGGTCAAGGAGAAG
ATCAGCAACTTTTGTCATGTGGGGCCGGATCAGGTGATATGCATCCACGA
TTTGAACTCCATTTATCATGTTCCGCTGCTGATGGAGCAGAATGGTGTTA
TTGAATACCTAAATGAGCGCCTACAGCTTAATATCGACATGAGCAAGAGG
ACCAAATGCTTGCAGCAATGGCGAGATTTGGCGCGTCGAACGGAGACCGT
TCGCCGTGAAGTTTGCATCGCCGTCGTGGGAAAGTACACCAAGTTCACGG
ATTCGTACGCCTCCGTAGTTAAAGCCCTGCAACATGCCGCCCTGGCAGTG
AATCGCAAACTGGAACTGGTCTTTATCGAGTCGTGCCTGCTGGAGGAGGA
AACTTTGCATTCTGAGCCGAGCAAGTACCACAAGGAGTGGCAGAAGCTAT
GCGATAGCCATGGCATCCTAGTCCCCGGTGGATTCGGTTCCCGTGGAATG
GAGGGCAAGATTCGTGCATGCCAATGGGCGCGAGAGAATCAAAAGCCATT
GCTTGGCATCTGCTTGGGTCTGCAAGCGGCGGTCATTGAATTCGCACGAA
ATAAACTTGGTCTCAAGGATGCAAACACCACAGAAATCGATCCGAACACA
GCTAATGCCTTGGTCATCGATATGCCAGAGCATCACACGGGTCAATTGGG
CGGCACTATGCGCTTGGGCAAGCGAATAACTGTTTTCTCTGATGGTCCTA
GTGTCATTCGCCAGTTGTATGGCAATCCGAAAAGCGTGCAGGAGCGTCAT
CGGCATCGTTACGAGGTTAATCCCAAATACGTGCATCTGCTGGAAGAGCA
AGGCATGCGATTTGTGGGCACCGACGTCGACAAAACTAGGATGGAAATCA
TTGAGCTCAGCGGTCATCCCTACTTTGTTGCCACCCAATATCATCCAGAG
TACTTGTCGCGGCCTCTGAAGCCGTCGCCTCCTTTCCTCGGCCTGATCCT
GGCCTCAGTGGATCGATTGAACCAATATATTCAGCGCGGTTGCCGCCTGT
CGCCCCGCCAGCTATCCGACGCATCCTCGGATGAGGAGGACAGTGTTGTG
GGCTTGGCCGGAGCAACAAAATCGCTGAGCTCCTTGAAAATTCCCATTAC
ACCCACAAATGGAATATCAAAAAGTTGCAATGGTAGCATAAGCACTTCCG
ACAGCGAAGGTGCCTGCGGAGGCGTTGATCCTACCAATGGCCATAAGTAA
AAGCTTTCTAGACCAT
BS15640.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:57:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CTPsyn-RC | 1884 | CG45070-PC | 1..1884 | 17..1900 | 9420 | 100 | Plus |
CTPsyn-RA | 1884 | CG45070-PA | 1..1884 | 17..1900 | 9420 | 100 | Plus |
CTPsyn-RB | 1872 | CG45070-PB | 155..1872 | 183..1900 | 8590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:57:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CTPsyn-RC | 2627 | CG45070-RC | 438..2322 | 17..1901 | 9425 | 100 | Plus |
CTPsyn-RA | 2406 | CG45070-RA | 217..2101 | 17..1901 | 9425 | 100 | Plus |
CTPsyn-RB | 2423 | CG45070-RB | 400..2118 | 183..1901 | 8595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:57:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15111653..15112698 | 856..1901 | 5230 | 100 | Plus |
3L | 28110227 | 3L | 15111085..15111588 | 352..855 | 2520 | 100 | Plus |
3L | 28110227 | 3L | 15110815..15110986 | 182..353 | 860 | 100 | Plus |
3L | 28110227 | 3L | 15098351..15098525 | 17..191 | 845 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:57:49 has no hits.
BS15640.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:21 Download gff for
BS15640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-RC | 1..1884 | 17..1900 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:33:11 Download gff for
BS15640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-RC | 215..2096 | 17..1898 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:06 Download gff for
BS15640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CTPsyn-RC | 217..2098 | 17..1898 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:17 Download gff for
BS15640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-RC | 215..2096 | 17..1898 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:01:21 Download gff for
BS15640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CTPsyn-RA | 217..2098 | 17..1898 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:01:21 Download gff for
BS15640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15098351..15098516 | 17..182 | 100 | -> | Plus |
3L | 15110816..15110986 | 183..353 | 100 | -> | Plus |
3L | 15111087..15111588 | 354..855 | 100 | -> | Plus |
3L | 15111653..15112695 | 856..1898 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:06 Download gff for
BS15640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15091451..15091616 | 17..182 | 100 | -> | Plus |
arm_3L | 15103916..15104086 | 183..353 | 100 | -> | Plus |
arm_3L | 15104187..15104688 | 354..855 | 100 | -> | Plus |
arm_3L | 15104753..15105795 | 856..1898 | 100 | | Plus |
BS15640.3prime Sequence
765 bp (742 high quality bases) assembled on 2006-12-21
> BS15640.3prime
ATGGTCTAGAAAGCTTTTCCCTTTGGAGATTGGTAGGATCAACGCCTCCG
CAGGCACCTTCGCTGTCGGAAGTGCTTATGCTACCATTGCAACTTTTTGA
TATTCCATTTGTGGGTGTAATGGGAATTTTCAAGGAGCTCAGCGATTTTG
TTGCTCCGGCCAAGCCCACAACACTGTCCTCCTCATCCGAGGATGCGTCG
GATAGCTGGCGGGGCGACAGGCGGCAACCGCGCTGAATATATTGGTTCAA
TCGATCCACTGAGGCCAGGATCAGGCCGAGGAAAGGAGGCGACGGCTTCA
GAGGCCGCGACAAGTACTCTGGATGATATTGGGTGGCAACAAAGTAGGGA
TGACCGCTGAGCTCAATGATTTCCATCCTAGTTTTGTCGACGTCGGTGCC
CACAAATCGCATGCCTTGCTCTTCCAGCAGATGCACGTATTTGGGATTAA
CCTCGTAACGATGCCGATGACGCTCCTGCACGCTTTTCGGATTGCCATAC
AACTGGCGAATGACACTAGGACCATCAGAGAAAACAGTTATTCGCTTGCC
CAAGCGCATAGTGCCGCCCAATTGACCCGTGTGATGCTCTGGCATATCGA
TGACCAAGGCATTAGCTGTGTTCGGATCGATTTCTGTGGTGTTTGCATCC
TTGAGACCAAGTTTATTTCGTGCGAATTCAATGACCGCCGCTTGCAGACC
CAAGCAGATGCCAAGCAATGGCTTTTGATTCTCTCGCGCCCATTGGCATG
CACGAATCTTGCCCT
BS15640.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6854-PC | 1884 | CG6854-RC | 1136..1872 | 765..29 | 3685 | 100 | Minus |
CG6854-PB | 1872 | CG6854-RB | 1124..1860 | 765..29 | 3685 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:19:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CTPsyn-RC | 2627 | CG45070-RC | 1573..2309 | 765..29 | 3685 | 100 | Minus |
CTPsyn-RB | 2423 | CG45070-RB | 1369..2105 | 765..29 | 3685 | 100 | Minus |
CTPsyn-RA | 2406 | CG45070-RA | 1352..2088 | 765..29 | 3685 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:19:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15111949..15112685 | 765..29 | 3685 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:19:40 has no hits.
BS15640.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:40 Download gff for
BS15640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-PC | 1136..1884 | 17..765 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:11:13 Download gff for
BS15640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-PB | 1124..1872 | 17..765 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:27:49 Download gff for
BS15640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CTPsyn-RC | 1352..2101 | 16..765 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:51:26 Download gff for
BS15640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CTPsyn-RA | 1352..2101 | 16..765 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:51:26 Download gff for
BS15640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15111949..15112686 | 27..765 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:27:49 Download gff for
BS15640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15105049..15105786 | 27..765 | 99 | -> | Minus |
BS15640.5prime Sequence
889 bp (782 high quality bases) assembled on 2006-12-21
> BS15640.5prime
GAAGTTATCCTTCGACATGAAATACATCCTGGTAACTGGTGGCGTCATTA
GTGGCGTGGGAAAAGGAGTGATTGCCTCCTCGTTCGGAACGCTTTTGAAA
TCCTGTGGTCTGGATGTAACCTCGATCAAGATTGACCCCTATATCAATAT
AGATGCTGGAACCTTTTCGCCTTATGAGCATGGCGAGGTTTACGTTTTGG
ACGATGGCGCCGAGGTGGATCTGGATCTGGGAAACTATGAACGGTTTTTG
GATGTTACCCTGCATCGGGACAACAACATAACCACCGGAAAAATTTACAA
GTTGGTCATTGAGAAGGAGCGCACTGGCGAGTACTTGGGCAAAACGGTTC
AAGTTGTCCCACACATCACTGATGCCATTCAGGAATGGGTGGAGCGCGTG
GCCCAGACACCCGTTCAGGGATCTTCAAAGCCACAGGTGTGCATCGTGGA
ATTGGGAGGAACGATTGGTGACATCGAAGGCATGCCTTTCGTAGAGGCCT
TCCGTCAGTTTCAGTTCCGCGTAAAGAGAGAGAACTTCTGTTTGGCCCAT
GTGTCGCTGGTTCCGTTGCCAAAGGCTACCGGAGAACCCAAGACCAAGCC
CACACAAAGTTCGGTCAGAGAACTGAGAGGATGTGGCCTGAGTCCCGATT
TGATTGTCTGCCGATCGGAGAAACCCATTGGACTGGAGGTCAAGGAGAAG
ATCAGCAACTTTTGTCATGTGGGGCCGGATCANGTGATATGCATCCACGA
TTTGAACTCCATTTATCATGTTCCGCTGCTGATGGAGCAGAATGGTGTTA
TTGAATACCTAAATGAGCGCCTACAGCTTAATATCGACATGAGCAAGAGG
ACCAAATGCTTGCAGCAATGGCGAGATTTGGCGCGTCCA
BS15640.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6854-PC | 1884 | CG6854-RC | 1..871 | 17..887 | 4336 | 99.8 | Plus |
CG6854-PB | 1872 | CG6854-RB | 155..859 | 183..887 | 3506 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:07:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CTPsyn-RC | 2627 | CG45070-RC | 438..1308 | 17..887 | 4344 | 99.9 | Plus |
CTPsyn-RA | 2406 | CG45070-RA | 217..1087 | 17..887 | 4344 | 99.9 | Plus |
CTPsyn-RB | 2423 | CG45070-RB | 400..1104 | 183..887 | 3514 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 00:07:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15111085..15111588 | 352..855 | 2509 | 99.8 | Plus |
3L | 28110227 | 3L | 15110815..15110986 | 182..353 | 860 | 100 | Plus |
3L | 28110227 | 3L | 15098351..15098525 | 17..191 | 845 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-06 00:07:12 has no hits.
BS15640.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:41 Download gff for
BS15640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-PC | 1..871 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:11:14 Download gff for
BS15640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-PC | 1..871 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 03:34:55 Download gff for
BS15640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CTPsyn-RC | 217..1087 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:35:15 Download gff for
BS15640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CTPsyn-RA | 217..1087 | 17..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 00:35:15 Download gff for
BS15640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15098351..15098516 | 17..182 | 100 | -> | Plus |
3L | 15110816..15110986 | 183..353 | 100 | -> | Plus |
3L | 15111087..15111588 | 354..855 | 99 | -> | Plus |
3L | 15111653..15111684 | 856..888 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 03:34:55 Download gff for
BS15640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15091451..15091616 | 17..182 | 100 | -> | Plus |
arm_3L | 15103916..15104086 | 183..353 | 100 | -> | Plus |
arm_3L | 15104187..15104688 | 354..855 | 99 | -> | Plus |
arm_3L | 15104753..15104784 | 856..888 | 96 | | Plus |
BS15640.pep Sequence
Translation from 16 to 1899
> BS15640.pep
MKYILVTGGVISGVGKGVIASSFGTLLKSCGLDVTSIKIDPYINIDAGTF
SPYEHGEVYVLDDGAEVDLDLGNYERFLDVTLHRDNNITTGKIYKLVIEK
ERTGEYLGKTVQVVPHITDAIQEWVERVAQTPVQGSSKPQVCIVELGGTI
GDIEGMPFVEAFRQFQFRVKRENFCLAHVSLVPLPKATGEPKTKPTQSSV
RELRGCGLSPDLIVCRSEKPIGLEVKEKISNFCHVGPDQVICIHDLNSIY
HVPLLMEQNGVIEYLNERLQLNIDMSKRTKCLQQWRDLARRTETVRREVC
IAVVGKYTKFTDSYASVVKALQHAALAVNRKLELVFIESCLLEEETLHSE
PSKYHKEWQKLCDSHGILVPGGFGSRGMEGKIRACQWARENQKPLLGICL
GLQAAVIEFARNKLGLKDANTTEIDPNTANALVIDMPEHHTGQLGGTMRL
GKRITVFSDGPSVIRQLYGNPKSVQERHRHRYEVNPKYVHLLEEQGMRFV
GTDVDKTRMEIIELSGHPYFVATQYHPEYLSRPLKPSPPFLGLILASVDR
LNQYIQRGCRLSPRQLSDASSDEEDSVVGLAGATKSLSSLKIPITPTNGI
SKSCNGSISTSDSEGACGGVDPTNGHK*
BS15640.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CTPsyn-PC | 627 | CG45070-PC | 1..627 | 1..627 | 3279 | 100 | Plus |
CTPsyn-PA | 627 | CG45070-PA | 1..627 | 1..627 | 3279 | 100 | Plus |
CTPsyn-PB | 623 | CG45070-PB | 53..623 | 57..627 | 2991 | 100 | Plus |