Clone Sequence Records
BS15642.3prime Sequence
846 bp (703 high quality bases) assembled on 2006-12-21
> BS15642.3prime
TCCCCTTAAGGGGCGCGCCAAACGAATGGTCTAGAAAGCTTTTATCCTCT
AAGCAACGCCATTTCTTGCGCCGCGGGCGTCAGTGACTGGCCCAAAGCGG
AGGCAGCGGACACGGCGCTGCTCATCCCATCGTCCTCGTCGTCGTCCATC
GATGCATTCTTGCGCTCAATCTCCGCTAACGCTGGCTGGTCATCATCATC
ACAATTGCTGCGCTCGACCTGGTCGGCAGCTTCTTCTTCCTGCGCCTCAT
CGGCAAAGGACACTTCTACGGGGCTGTTGTTGCTATCACCATTAGCTGTC
GCAGCCGTCGTCGTCTGGTCGTGCTGGTTATTGTTGGCTTTATCCTCACT
GGCGGACTTATTGTTATCACTGTCGGCATCGTCGCTCCTCGCCGGCGCCG
TCTCCTCTTCGGGTATGTCCTCGATCAGGCTGCGATTGCCGGATCCGGCC
GATGGACTGCGAGGCGGGGTTGTTGTCGTCGCCGCTGCGGCTGTCGCTGG
TATTTCAACCTCAGCCACTTTGCGCAGCAGAACGGGATCGGACGCACGCA
ATGAGCTCTCCGAGCCACCGACGCCTTCACCGCTTGGTCGCAGGACGAGG
TAGAGCAGTATATCGGACAGCGAGATAATGCCGATCACTTTGCGATTCTC
GTCGACCACCACCAGTCGATGTACTTCGGCGCGGACGATTCGTTCCATGA
TCGTGTAGAGCGATTCGTCCAGATTGCACTTCTGCACGCCCTCGAACCAC
TCGTTCCGGTGCTCGTTGGCTTTGCGCAGCGAAACATCGAGATCGTTGTA
GGTTTTCTCGGCGGCGAGATTAATCACATCAAACTTTGCGTAAATG
BS15642.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17299-PK | 2721 | SNF4Agamma-RK | 1917..2709 | 846..54 | 3965 | 100 | Minus |
| CG17299-PL | 2157 | SNF4Agamma-RL | 1353..2145 | 846..54 | 3965 | 100 | Minus |
| CG17299-PI | 1617 | SNF4Agamma-RI | 813..1605 | 846..54 | 3965 | 100 | Minus |
| CG17299-PJ | 2721 | SNF4Agamma-RJ | 1917..2709 | 846..54 | 3965 | 100 | Minus |
| CG17299-PA | 2844 | SNF4Agamma-RA | 2040..2832 | 846..54 | 3965 | 100 | Minus |
| CG17299-PB | 2844 | SNF4Agamma-RB | 2040..2832 | 846..54 | 3965 | 100 | Minus |
| CG17299-PF | 4203 | SNF4Agamma-RF | 3399..4191 | 846..54 | 3965 | 100 | Minus |
| CG17299-PC | 2721 | SNF4Agamma-RC | 1917..2709 | 846..54 | 3965 | 100 | Minus |
| CG17299-PE | 2721 | SNF4Agamma-RE | 1917..2709 | 846..54 | 3965 | 100 | Minus |
| CG17299-PG | 2445 | SNF4Agamma-RG | 1641..2433 | 846..54 | 3965 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 12:31:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-RE | 3308 | CG17299-RE | 2344..3149 | 846..41 | 3985 | 99.6 | Minus |
| SNF4Agamma-RC | 3197 | CG17299-RC | 2233..3038 | 846..41 | 3985 | 99.6 | Minus |
| SNF4Agamma-RG | 2786 | CG17299-RG | 1822..2627 | 846..41 | 3985 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 12:31:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21211748..21212528 | 821..41 | 3860 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-01-30 12:31:07 has no hits.
BS15642.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:45 Download gff for
BS15642.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17299-PB | 2040..2844 | 42..846 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:11:18 Download gff for
BS15642.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17299-PG | 1641..2445 | 42..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:37:54 Download gff for
BS15642.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RG | 1822..2630 | 37..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:02:19 Download gff for
BS15642.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RG | 1822..2630 | 37..846 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 14:02:19 Download gff for
BS15642.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21211566..21211590 | 822..846 | 100 | -> | Minus |
| 3R | 21211748..21212529 | 41..821 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:37:54 Download gff for
BS15642.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17037288..17037312 | 822..846 | 100 | -> | Minus |
| arm_3R | 17037470..17038251 | 41..821 | 99 | <- | Minus |
BS15642.5prime Sequence
913 bp (871 high quality bases) assembled on 2006-12-21
> BS15642.5prime
GAAGTTATCCTTCGAGGTGTATCGCCGCCGGTATTCCGCCTTCGAGCCCA
GCACACCCCGCGTGGGAGTGCTACCCTCTCCACCGCCTCAATATGCCAAC
CCTCCCGCCGACACTGCCGCCCCGAAAACGCCACCCAAGCTGAGCGTACA
CTTTGACCCCAATTTGCCGAAAGACAACGATAGCAACAACAACCTCACCG
GCAGCGAAAATGCAAATGCTAAAGGCGGCGGTCGCAAGGCGCGTTCACTA
AGCAATTCGCCACTGTATCACCGAAAAAAGCGGTACGGCCATCTGCCGGC
GCTGATGTCGAATAACGGGCCGACGGCCAGCAGCAACTACCAGCTGCTGA
ACAGTGCGAATCTGCGAGATCTCATCGACGGCCAACGCCACTCGCATCAC
GTAAGCAGGCGCGATGACAGCCAAAGCCACAGTCATAGCGAAAGCCCAAG
TCACATTGGCCACATTAGCCAAAGCAACCAAAGCATACCAAGCCTCCCAA
GCCTGCCAAGCGGCAAAAACAAGACGAAAGATGGCAAAAAGCTGAAGGCA
ACTTTAACGGCGGCCATGTCATCGTCGCTGCTGCGACGCAAGGCGCACAG
CAATCACAGTCAACAGCAGAAACTGCAACTGCAACAGCAACAGCAAGAGC
AACATCAGCAACAGCTGCAGCAGCAACAATTGAGAAGCAACAACAGCAAG
GCAATTGCAAATGCTGCCCGCCATTCGCTGGGTCATTCACCCTCCGCTGC
CGCCGCCGCTGCTGCAGTGCAGCAGACGCTTGTCTACGAGCGGCGACGCG
TCAGCAGCGCCCACTCCTCCCCCTCGCCCACCTCCAGGCACCACTCCCCA
GTGCACCAGTGCATGCTGATGCGGCGGCGCAGCGACTACAGCGTCGAGCA
GATCGAGCAGTGG
BS15642.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17299-PG | 2445 | SNF4Agamma-RG | 2..897 | 18..913 | 4480 | 100 | Plus |
| CG17299-PL | 2157 | SNF4Agamma-RL | 1..609 | 305..913 | 3045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 07:29:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-RG | 2786 | CG17299-RG | 183..1078 | 18..913 | 4480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 07:29:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21205110..21206005 | 18..913 | 4480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 07:29:42 has no hits.
BS15642.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:46 Download gff for
BS15642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17299-PG | 2..897 | 18..913 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:11:19 Download gff for
BS15642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17299-PG | 2..897 | 18..913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 22:24:52 Download gff for
BS15642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RG | 179..1078 | 11..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 08:22:46 Download gff for
BS15642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RG | 179..1078 | 11..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 08:22:46 Download gff for
BS15642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21205106..21206005 | 11..913 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 22:24:52 Download gff for
BS15642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17030828..17031727 | 11..913 | 99 | | Plus |
BS15642.complete Sequence
2477 bp assembled on 2009-12-07
GenBank Submission: KX800406
> BS15642.complete
GAAGTTATCATTCGACATGTATCGCCGCCGGTATTCCGCCTTCGAGCCCA
GCACACCCCGCGTGGGAGTGCTACCCTCTCCACCGCCTCAATATGCCAAC
CCTCCCGCCGACACTGCCGCCCCGAAAACGCCACCCAAGCTGAGCGTACA
CTTTGACCCCAATTTGCCGAAAGACAACGATAGCAACAACAACCTCACCG
GCAGCGAAAATGCAAATGCTAAAGGCGGCGGTCGCAAGGCGCGTTCACTA
AGCAATTCGCCACTGTATCACCGAAAAAAGCGGTACGGCCATCTGCCGGC
GCTGATGTCGAATAACGGGCCGACGGCCAGCAGCAACTACCAGCTGCTGA
ACAGTGCGAATCTGCGAGATCTCATCGACGGCCAACGCCACTCGCATCAC
GTAAGCAGGCGCGATGACAGCCAAAGCCACAGTCATAGCGAAAGCCCAAG
TCACATTGGCCACATTAGCCAAAGCAACCAAAGCATACCAAGCCTCCCAA
GCCTGCCAAGCGGCAAAAACAAGACGAAAGATGGCAAAAAGCTGAAGGCA
ACTTTAACGGCGGCCATGTCATCGTCGCTGCTGCGACGCAAGGCGCACAG
CAATCACAGTCAACAGCAGAAACTGCAACTGCAACAGCAACAGCAAGAGC
AACATCAGCAACAGCTGCAGCAGCAACAATTGAGAAGCAACAACAGCAAG
GCAATTGCAAATGCTGCCCGCCATTCGCTGGGTCATTCACCCTCCGCTGC
CGCCGCCGCTGCTGCAGTGCAGCAGACGCTTGTCTACGAGCGGCGACGCG
TCAGCAGCGCCCACTCCTCCCCCTCGCCCACCTCCAGGCACCACTCCCCA
GTGCACCAGTGCATGCTGATGCGGCGGCGCAGCGACTACAGCGTCGAGCA
GATCGAGCAGTGGAAACGCCAGCAGCAATTGTTGCCGCGATCCGGACGCA
AGATTAGCTTGCCTGTCGCTGATCCGTTCCTAGAGAAAGTAAATCTATCA
GATCTGGAAGAGGACGACTCACAGATCTTCGTGAAGTTCTTTCGTTTTCA
CAAGTGCTATGATCTGATACCCACCTCCGCCAAGTTGGTTGTCTTCGACA
CCCAGCTTCTTGTAAAGAAGGCCTTCTACGCCCTCGTCTACAACGGTGTG
CGAGCGGCACCGCTCTGGGATTCGGAGAAGCAACAGTTCGTGGGCATGCT
AACCATCACGGACTTTATCAAGATCCTGCAAATGTATTACAAATCGCCAA
ATGCGTCCATGGAGCAGCTGGAAGAGCACAAACTGGACACGTGGCGGAGC
GTGCTGCACAACCAGGTGATGCCGTTGGTCAGCATCGGACCGGATGCGTC
CCTCTACGATGCCATCAAAATTCTCATCCACAGCCGCATACATCGCCTGC
CCGTCATCGATCCGGCGACCGGCAATGTCCTCTACATCCTGACACATAAA
CGCATACTTAGGTTCCTTTTCCTATACATTAATGAATTACCAAAGCCCGC
GTACATGCAAAAAAGTTTGCGCGAACTGAAGATTGGCACCTATAACAACA
TCGAGACCGCCGACGAGACGACGAGCATCATCACGGCGCTCAAGAAATTT
GTGGAGCGACGAGTCTCAGCCCTGCCACTAGTGGATTCCGATGGTCGCCT
CGTTGACATTTACGCAAAGTTTGATGTGATTAATCTCGCCGCCGAGAAAA
CCTACAACGATCTCGATGTTTCGCTGCGCAAAGCCAACGAGCACCGGAAC
GAGTGGTTCGAGGGCGTGCAGAAGTGCAATCTGGACGAATCGCTCTACAC
GATCATGGAACGAATCGTCCGCGCCGAAGTACATCGACTGGTGGTGGTCG
ACGAGAATCGCAAAGTGATCGGCATTATCTCGCTGTCCGATATACTGCTC
TACCTCGTCCTGCGACCAAGCGGTGAAGGCGTCGGTGGCTCGGAGAGCTC
ATTGCGTGCGTCCGATCCCGTTCTGCTGCGCAAAGTGGCTGAGGTTGAAA
TACCAGCGACAGCCGCAGCGGCGACGACAACAACCCCGCCTCGCAGTCCA
TCGGCCGGATCCGGCAATCGCAGCCTGATCGAGGACATACCCGAAGAGGA
GACGGCGCCGGCGAGGAGCGACGATGCCGACAGTGATAACAATAAGTCCG
CCAGTGAGGATAAAGCCAACAATAACCAGCACGACCAGACGACGACGGCT
GCGACAGCTAATGGTGATAGCAACAACAGCCCCGTAGAAGTGTCCTTTGC
CGATGAGGCGCAGGAAGAAGAAGCTGCCGACCAGGTCGAGCGCAGCAATT
GTGATGATGATGACCAGCCAGCGTTAGCGGAGATTGAGCGCAAGAATGCA
TCGATGGACGACGACGAGGACGATGGGATGAGCAGCGCCGTGTCCGCTGC
CTCCGCTTTGGGCCAGTCACTGACGCCCGCGGCGCAAGAAATGGCGTTGG
TTAGTGAATAAAAGCTTTCTAGACCAT
BS15642.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:29:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-RG | 2445 | CG17299-PG | 1..2445 | 17..2461 | 12225 | 100 | Plus |
| SNF4Agamma-RE | 2721 | CG17299-PE | 1219..2721 | 959..2461 | 7515 | 100 | Plus |
| SNF4Agamma-RC | 2721 | CG17299-PC | 1219..2721 | 959..2461 | 7515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:29:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-RG | 2786 | CG17299-RG | 181..2627 | 16..2462 | 12235 | 100 | Plus |
| SNF4Agamma-RE | 3308 | CG17299-RE | 1646..3149 | 959..2462 | 7520 | 100 | Plus |
| SNF4Agamma-RC | 3197 | CG17299-RC | 1535..3038 | 959..2462 | 7520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:29:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21205108..21206050 | 16..958 | 4715 | 100 | Plus |
| 3R | 32079331 | 3R | 21211748..21212528 | 1682..2462 | 3905 | 100 | Plus |
| 3R | 32079331 | 3R | 21210788..21211080 | 1007..1299 | 1465 | 100 | Plus |
| 3R | 32079331 | 3R | 21211387..21211590 | 1478..1681 | 1020 | 100 | Plus |
| 3R | 32079331 | 3R | 21211141..21211319 | 1299..1477 | 895 | 100 | Plus |
| 3R | 32079331 | 3R | 21207619..21207667 | 959..1007 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:29:18 has no hits.
BS15642.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:36 Download gff for
BS15642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RG | 180..2622 | 17..2459 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:25 Download gff for
BS15642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RG | 182..2624 | 17..2459 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:04 Download gff for
BS15642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RG | 180..2622 | 17..2459 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:32 Download gff for
BS15642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RG | 182..2624 | 17..2459 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:32 Download gff for
BS15642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21205109..21206050 | 17..958 | 100 | -> | Plus |
| 3R | 21207619..21207667 | 959..1007 | 100 | -> | Plus |
| 3R | 21210789..21211079 | 1008..1298 | 100 | -> | Plus |
| 3R | 21211141..21211319 | 1299..1477 | 100 | -> | Plus |
| 3R | 21211387..21211590 | 1478..1681 | 100 | -> | Plus |
| 3R | 21211748..21212525 | 1682..2459 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:25 Download gff for
BS15642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17030831..17031772 | 17..958 | 100 | -> | Plus |
| arm_3R | 17033341..17033389 | 959..1007 | 100 | -> | Plus |
| arm_3R | 17036511..17036801 | 1008..1298 | 100 | -> | Plus |
| arm_3R | 17036863..17037041 | 1299..1477 | 100 | -> | Plus |
| arm_3R | 17037109..17037312 | 1478..1681 | 100 | -> | Plus |
| arm_3R | 17037470..17038247 | 1682..2459 | 100 | | Plus |
BS15642.pep Sequence
Translation from 16 to 2460
> BS15642.pep
MYRRRYSAFEPSTPRVGVLPSPPPQYANPPADTAAPKTPPKLSVHFDPNL
PKDNDSNNNLTGSENANAKGGGRKARSLSNSPLYHRKKRYGHLPALMSNN
GPTASSNYQLLNSANLRDLIDGQRHSHHVSRRDDSQSHSHSESPSHIGHI
SQSNQSIPSLPSLPSGKNKTKDGKKLKATLTAAMSSSLLRRKAHSNHSQQ
QKLQLQQQQQEQHQQQLQQQQLRSNNSKAIANAARHSLGHSPSAAAAAAA
VQQTLVYERRRVSSAHSSPSPTSRHHSPVHQCMLMRRRSDYSVEQIEQWK
RQQQLLPRSGRKISLPVADPFLEKVNLSDLEEDDSQIFVKFFRFHKCYDL
IPTSAKLVVFDTQLLVKKAFYALVYNGVRAAPLWDSEKQQFVGMLTITDF
IKILQMYYKSPNASMEQLEEHKLDTWRSVLHNQVMPLVSIGPDASLYDAI
KILIHSRIHRLPVIDPATGNVLYILTHKRILRFLFLYINELPKPAYMQKS
LRELKIGTYNNIETADETTSIITALKKFVERRVSALPLVDSDGRLVDIYA
KFDVINLAAEKTYNDLDVSLRKANEHRNEWFEGVQKCNLDESLYTIMERI
VRAEVHRLVVVDENRKVIGIISLSDILLYLVLRPSGEGVGGSESSLRASD
PVLLRKVAEVEIPATAAAATTTTPPRSPSAGSGNRSLIEDIPEEETAPAR
SDDADSDNNKSASEDKANNNQHDQTTTAATANGDSNNSPVEVSFADEAQE
EEAADQVERSNCDDDDQPALAEIERKNASMDDDEDDGMSSAVSAASALGQ
SLTPAAQEMALVSE*
BS15642.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:23:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-PG | 814 | CG17299-PG | 1..814 | 1..814 | 4152 | 100 | Plus |
| SNF4Agamma-PE | 906 | CG17299-PE | 407..906 | 315..814 | 2522 | 100 | Plus |
| SNF4Agamma-PC | 906 | CG17299-PC | 407..906 | 315..814 | 2522 | 100 | Plus |
| SNF4Agamma-PF | 1400 | CG17299-PF | 901..1400 | 315..814 | 2522 | 100 | Plus |
| SNF4Agamma-PS | 1400 | CG17299-PS | 901..1400 | 315..814 | 2522 | 100 | Plus |
