Clone BS15648 Report

Search the DGRC for BS15648

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:156
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptTim8-RA
Protein status:BS15648.pep: full length peptide match
Sequenced Size:299

Clone Sequence Records

BS15648.3prime Sequence

322 bp (322 high quality bases) assembled on 2006-12-21

> BS15648.3prime
TCCCATAAGGGGGCGCGCCAAACGAATGGTCTAGAAAGCTTCTCCCTGTC
GGGCGCCCCTCGCTTTTGGAGCATCTGAGCGAACCGCTGGGTGATAAGCA
GCGACGTGTCGATGAATCGGCCGACGCAGTTGCTCAGGCACGTCTCGGTG
GCGTGGTCCAGCTTGGTACTCGGCTTGCCGATGCACTTCTCCCAGCAGAT
CTCGTTGAACTCGTGTATCTGCGCGTTGACCTGTGCCTTCTGTTTCTCAA
TCAAGAGGAACTCCTGCAGCTCCTTGTCATTGCCGGAAAGGTTCTCAAAA
TCGGACATGTCGACTGATAACT

BS15648.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1728-PA 267 Tim8-RA 1..251 308..58 1230 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
Tim8-RB 761 CG1728-RB 92..342 308..58 1240 99.6 Minus
Tim8-RA 661 CG1728-RA 92..342 308..58 1240 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 04:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11368701..11368864 221..58 805 99.4 Minus
X 23542271 X 11368536..11368625 308..219 450 100 Minus
Blast to na_te.dros performed 2015-01-30 04:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 3256..3287 204..173 106 81.2 Minus

BS15648.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:58 Download gff for BS15648.3prime
Subject Subject Range Query Range Percent Splice Strand
Tim8-PA 1..261 48..308 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:11:34 Download gff for BS15648.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1728-PA 1..261 48..308 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:32:05 Download gff for BS15648.3prime
Subject Subject Range Query Range Percent Splice Strand
Tim8-RA 84..352 48..318 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 06:46:51 Download gff for BS15648.3prime
Subject Subject Range Query Range Percent Splice Strand
Tim8-RA 84..352 48..318 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 06:46:51 Download gff for BS15648.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11368528..11368625 219..318 96 -> Minus
X 11368704..11368889 29..218 92 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:32:05 Download gff for BS15648.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11262561..11262658 219..318 96 -> Minus
arm_X 11262737..11262922 29..218 92 <- Minus

BS15648.5prime Sequence

297 bp (297 high quality bases) assembled on 2006-12-21

> BS15648.5prime
GAAGTTATCCCTTGACGTGTCCGATTTTGAGAACCTTTCCGGCAATGACA
AGGAGCTGCAGGAGTTCCTCTTGATTGAGAAACAGAAGGCACAGGTCAAC
GCGCAGATACACGAGTTCAACGAGATCTGCTGGGAGAAGTGCATCGGCAA
GCCGAGTACCAAGCTGGACCACGCCACCGAGACGTGCCTGAGCAACTGCG
TCGACCGATTCATCGACACGTCGCTGCTTATCACCCAGCGGTTCGCTCAG
ATGCTCCAAAAGCGAGGTGGCGGCGACCTGTAGAAGCTTTCTAGACC

BS15648.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1728-PA 267 Tim8-RA 2..267 18..283 1330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
Tim8-RB 761 CG1728-RB 93..359 18..284 1335 100 Plus
Tim8-RA 661 CG1728-RA 93..359 18..284 1335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11368701..11368881 104..284 905 100 Plus
X 23542271 X 11368537..11368625 18..106 445 100 Plus
Blast to na_te.dros performed 2015-01-30 16:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 3256..3287 121..152 106 81.2 Plus

BS15648.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:59 Download gff for BS15648.5prime
Subject Subject Range Query Range Percent Splice Strand
Tim8-PA 2..267 18..283 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:11:36 Download gff for BS15648.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1728-PA 2..267 18..283 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 15:53:56 Download gff for BS15648.5prime
Subject Subject Range Query Range Percent Splice Strand
Tim8-RA 89..362 15..290 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:10:50 Download gff for BS15648.5prime
Subject Subject Range Query Range Percent Splice Strand
Tim8-RA 89..362 15..290 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:10:50 Download gff for BS15648.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11368533..11368625 15..106 98 -> Plus
X 11368704..11368884 107..290 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 15:53:56 Download gff for BS15648.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11262566..11262658 15..106 98 -> Plus
arm_X 11262737..11262917 107..290 98   Plus

BS15648.complete Sequence

299 bp assembled on 2010-02-09

GenBank Submission: KX803869

> BS15648.complete
GAAGTTATCAGTCGACATGTCCGATTTTGAGAACCTTTCCGGCAATGACA
AGGAGCTGCAGGAGTTCCTCTTGATTGAGAAACAGAAGGCACAGGTCAAC
GCGCAGATACACGAGTTCAACGAGATCTGCTGGGAGAAGTGCATCGGCAA
GCCGAGTACCAAGCTGGACCACGCCACCGAGACGTGCCTGAGCAACTGCG
TCGACCGATTCATCGACACGTCGCTGCTTATCACCCAGCGGTTCGCTCAG
ATGCTCCAAAAGCGAGGTGGCGGCGACCTGTAGAAGCTTTCTAGACCAT

BS15648.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:55:45
Subject Length Description Subject Range Query Range Score Percent Strand
Tim8-RB 267 CG1728-PB 1..267 17..283 1335 100 Plus
Tim8-RA 267 CG1728-PA 1..267 17..283 1335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
Tim8-RB 761 CG1728-RB 92..359 17..284 1340 100 Plus
Tim8-RA 661 CG1728-RA 92..359 17..284 1340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11368701..11368881 104..284 905 100 Plus
X 23542271 X 11368536..11368625 17..106 450 100 Plus
Blast to na_te.dros performed 2014-11-27 10:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 3256..3287 121..152 106 81.2 Plus

BS15648.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:22 Download gff for BS15648.complete
Subject Subject Range Query Range Percent Splice Strand
Tim8-RA 1..267 17..283 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:28 Download gff for BS15648.complete
Subject Subject Range Query Range Percent Splice Strand
Tim8-RA 76..342 17..283 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:33 Download gff for BS15648.complete
Subject Subject Range Query Range Percent Splice Strand
Tim8-RA 92..358 17..283 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:19 Download gff for BS15648.complete
Subject Subject Range Query Range Percent Splice Strand
Tim8-RA 76..342 17..283 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:19 Download gff for BS15648.complete
Subject Subject Range Query Range Percent Splice Strand
Tim8-RA 92..358 17..283 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:19 Download gff for BS15648.complete
Subject Subject Range Query Range Percent Splice Strand
X 11368536..11368625 17..106 100 -> Plus
X 11368704..11368880 107..283 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:33 Download gff for BS15648.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11262569..11262658 17..106 100 -> Plus
arm_X 11262737..11262913 107..283 100   Plus

BS15648.pep Sequence

Translation from 16 to 282

> BS15648.pep
MSDFENLSGNDKELQEFLLIEKQKAQVNAQIHEFNEICWEKCIGKPSTKL
DHATETCLSNCVDRFIDTSLLITQRFAQMLQKRGGGDL*

BS15648.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
Tim8-PB 88 CG1728-PB 1..88 1..88 464 100 Plus
Tim8-PA 88 CG1728-PA 1..88 1..88 464 100 Plus
CG34132-PA 84 CG34132-PA 15..79 20..82 135 38.5 Plus