Clone Sequence Records
BS15648.3prime Sequence
322 bp (322 high quality bases) assembled on 2006-12-21
> BS15648.3prime
TCCCATAAGGGGGCGCGCCAAACGAATGGTCTAGAAAGCTTCTCCCTGTC
GGGCGCCCCTCGCTTTTGGAGCATCTGAGCGAACCGCTGGGTGATAAGCA
GCGACGTGTCGATGAATCGGCCGACGCAGTTGCTCAGGCACGTCTCGGTG
GCGTGGTCCAGCTTGGTACTCGGCTTGCCGATGCACTTCTCCCAGCAGAT
CTCGTTGAACTCGTGTATCTGCGCGTTGACCTGTGCCTTCTGTTTCTCAA
TCAAGAGGAACTCCTGCAGCTCCTTGTCATTGCCGGAAAGGTTCTCAAAA
TCGGACATGTCGACTGATAACT
BS15648.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1728-PA | 267 | Tim8-RA | 1..251 | 308..58 | 1230 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:31:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim8-RB | 761 | CG1728-RB | 92..342 | 308..58 | 1240 | 99.6 | Minus |
Tim8-RA | 661 | CG1728-RA | 92..342 | 308..58 | 1240 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 04:31:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11368701..11368864 | 221..58 | 805 | 99.4 | Minus |
X | 23542271 | X | 11368536..11368625 | 308..219 | 450 | 100 | Minus |
Blast to na_te.dros performed 2015-01-30 04:31:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 3256..3287 | 204..173 | 106 | 81.2 | Minus |
BS15648.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:58 Download gff for
BS15648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim8-PA | 1..261 | 48..308 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:11:34 Download gff for
BS15648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1728-PA | 1..261 | 48..308 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:32:05 Download gff for
BS15648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim8-RA | 84..352 | 48..318 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 06:46:51 Download gff for
BS15648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim8-RA | 84..352 | 48..318 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 06:46:51 Download gff for
BS15648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11368528..11368625 | 219..318 | 96 | -> | Minus |
X | 11368704..11368889 | 29..218 | 92 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:32:05 Download gff for
BS15648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11262561..11262658 | 219..318 | 96 | -> | Minus |
arm_X | 11262737..11262922 | 29..218 | 92 | <- | Minus |
BS15648.5prime Sequence
297 bp (297 high quality bases) assembled on 2006-12-21
> BS15648.5prime
GAAGTTATCCCTTGACGTGTCCGATTTTGAGAACCTTTCCGGCAATGACA
AGGAGCTGCAGGAGTTCCTCTTGATTGAGAAACAGAAGGCACAGGTCAAC
GCGCAGATACACGAGTTCAACGAGATCTGCTGGGAGAAGTGCATCGGCAA
GCCGAGTACCAAGCTGGACCACGCCACCGAGACGTGCCTGAGCAACTGCG
TCGACCGATTCATCGACACGTCGCTGCTTATCACCCAGCGGTTCGCTCAG
ATGCTCCAAAAGCGAGGTGGCGGCGACCTGTAGAAGCTTTCTAGACC
BS15648.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1728-PA | 267 | Tim8-RA | 2..267 | 18..283 | 1330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:50:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim8-RB | 761 | CG1728-RB | 93..359 | 18..284 | 1335 | 100 | Plus |
Tim8-RA | 661 | CG1728-RA | 93..359 | 18..284 | 1335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:50:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11368701..11368881 | 104..284 | 905 | 100 | Plus |
X | 23542271 | X | 11368537..11368625 | 18..106 | 445 | 100 | Plus |
Blast to na_te.dros performed 2015-01-30 16:50:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 3256..3287 | 121..152 | 106 | 81.2 | Plus |
BS15648.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:32:59 Download gff for
BS15648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim8-PA | 2..267 | 18..283 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:11:36 Download gff for
BS15648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1728-PA | 2..267 | 18..283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 15:53:56 Download gff for
BS15648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim8-RA | 89..362 | 15..290 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:10:50 Download gff for
BS15648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim8-RA | 89..362 | 15..290 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:10:50 Download gff for
BS15648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11368533..11368625 | 15..106 | 98 | -> | Plus |
X | 11368704..11368884 | 107..290 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 15:53:56 Download gff for
BS15648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11262566..11262658 | 15..106 | 98 | -> | Plus |
arm_X | 11262737..11262917 | 107..290 | 98 | | Plus |
BS15648.complete Sequence
299 bp assembled on 2010-02-09
GenBank Submission: KX803869
> BS15648.complete
GAAGTTATCAGTCGACATGTCCGATTTTGAGAACCTTTCCGGCAATGACA
AGGAGCTGCAGGAGTTCCTCTTGATTGAGAAACAGAAGGCACAGGTCAAC
GCGCAGATACACGAGTTCAACGAGATCTGCTGGGAGAAGTGCATCGGCAA
GCCGAGTACCAAGCTGGACCACGCCACCGAGACGTGCCTGAGCAACTGCG
TCGACCGATTCATCGACACGTCGCTGCTTATCACCCAGCGGTTCGCTCAG
ATGCTCCAAAAGCGAGGTGGCGGCGACCTGTAGAAGCTTTCTAGACCAT
BS15648.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:55:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim8-RB | 267 | CG1728-PB | 1..267 | 17..283 | 1335 | 100 | Plus |
Tim8-RA | 267 | CG1728-PA | 1..267 | 17..283 | 1335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:55:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim8-RB | 761 | CG1728-RB | 92..359 | 17..284 | 1340 | 100 | Plus |
Tim8-RA | 661 | CG1728-RA | 92..359 | 17..284 | 1340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:55:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11368701..11368881 | 104..284 | 905 | 100 | Plus |
X | 23542271 | X | 11368536..11368625 | 17..106 | 450 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:55:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 3256..3287 | 121..152 | 106 | 81.2 | Plus |
BS15648.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:22 Download gff for
BS15648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim8-RA | 1..267 | 17..283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:28 Download gff for
BS15648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim8-RA | 76..342 | 17..283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:33 Download gff for
BS15648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim8-RA | 92..358 | 17..283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:19 Download gff for
BS15648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim8-RA | 76..342 | 17..283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:19 Download gff for
BS15648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim8-RA | 92..358 | 17..283 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:19 Download gff for
BS15648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11368536..11368625 | 17..106 | 100 | -> | Plus |
X | 11368704..11368880 | 107..283 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:33 Download gff for
BS15648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11262569..11262658 | 17..106 | 100 | -> | Plus |
arm_X | 11262737..11262913 | 107..283 | 100 | | Plus |
BS15648.pep Sequence
Translation from 16 to 282
> BS15648.pep
MSDFENLSGNDKELQEFLLIEKQKAQVNAQIHEFNEICWEKCIGKPSTKL
DHATETCLSNCVDRFIDTSLLITQRFAQMLQKRGGGDL*
BS15648.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:58:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim8-PB | 88 | CG1728-PB | 1..88 | 1..88 | 464 | 100 | Plus |
Tim8-PA | 88 | CG1728-PA | 1..88 | 1..88 | 464 | 100 | Plus |
CG34132-PA | 84 | CG34132-PA | 15..79 | 20..82 | 135 | 38.5 | Plus |