Clone Sequence Records
BS15649.complete Sequence
284 bp assembled on 2010-02-09
GenBank Submission: KX801762
> BS15649.complete
GAAGTTATCAGTTGACATGTCGCATCAGTGCAGCTGCGGTCGCGACCTCA
ACAACAACTACGTCTCGTACACCAACGCCTACGCCAATGCGAATGCATCT
CTGGACCGCGAGGCGGCCACCAGCGGCAAGTCCGGCGGTCCGCCCCGCGC
CCAGCTGACGGCCAAGGTGATGTTCGGTACGGTGGGCGCCATCAAGGAGC
TGCGCGACAAGGAGCAGCAGCAACAGCAGCAGCGGCAGGCGGCACGAGCG
GGCGAGAGGCGCAACTGAAAGCTTTCTAGACCAT
BS15649.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:33:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13631-RB | 252 | CG13631-PB | 1..252 | 17..268 | 1260 | 100 | Plus |
CG13631-RA | 252 | CG13631-PA | 1..252 | 17..268 | 1260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:33:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13631-RB | 1583 | CG13631-RB | 170..423 | 15..268 | 1270 | 100 | Plus |
CG13631-RA | 761 | CG13631-RA | 170..423 | 15..268 | 1270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:33:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24769520..24769773 | 15..268 | 1270 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 04:33:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6813..6865 | 195..248 | 131 | 78.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1068..1124 | 210..265 | 129 | 74.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6835 | 195..251 | 128 | 75.9 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 909..1030 | 130..249 | 128 | 60.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6814 | 195..251 | 119 | 74.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..6791 | 195..249 | 118 | 75 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2353..2391 | 210..249 | 116 | 80 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6770 | 204..249 | 116 | 78.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2794..2841 | 195..242 | 114 | 70.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6824..6884 | 190..249 | 112 | 73 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2372 | 213..251 | 111 | 79.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6839 | 210..265 | 111 | 70.7 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7956..7998 | 207..247 | 111 | 76.7 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 9400..9442 | 207..247 | 111 | 76.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2629..2659 | 207..237 | 110 | 83.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2455..2483 | 210..238 | 109 | 86.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1094..1138 | 194..238 | 108 | 71.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2353..2395 | 195..237 | 107 | 72.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6780 | 213..269 | 107 | 69.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1558..1589 | 213..244 | 106 | 81.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6801 | 210..269 | 104 | 67.7 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 153..199 | 213..257 | 104 | 72.3 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9183..9229 | 213..257 | 104 | 72.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1116..1141 | 213..238 | 103 | 88.5 | Plus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 669..770 | 267..166 | 103 | 60.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2806..2857 | 213..266 | 102 | 70.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6818 | 210..265 | 102 | 69 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1089..1145 | 210..265 | 102 | 69 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1104..1141 | 213..251 | 102 | 76.9 | Plus |
BS15649.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:17 Download gff for
BS15649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13631-RA | 170..420 | 17..267 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:54 Download gff for
BS15649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13631-RA | 172..422 | 17..267 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:10 Download gff for
BS15649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13631-RA | 170..420 | 17..267 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:39 Download gff for
BS15649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13631-RA | 172..422 | 17..267 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:39 Download gff for
BS15649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24769522..24769772 | 17..267 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:54 Download gff for
BS15649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20595244..20595494 | 17..267 | 100 | | Plus |
BS15649.5prime Sequence
282 bp (282 high quality bases) assembled on 2006-12-21
> BS15649.5prime
GAAGTTATCCTTCGAGGTGTCGCATCAGTGCAGCTGCGGTCGCGACCTCA
ACAACAACTACGTCTCGTACACCAACGCCTACGCCTATGCGAATGCATCT
CTGGACCGCGAGGCGGCCACCAGCGGCAAGTCCGGCGGTCCGCCCCGCGC
CCAGCTGACGGCCAAGGTGATGTTCGGTACGGTGGGCGCCATCAAGGAGC
TGCGCGACAAGGAGCAGCAGCAACAGCAGCAGCGGCAGGCGGCACGAGCG
GGCGAGAGGCGCAACTGAAAGCTTTCTAGACC
BS15649.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13631-PA | 252 | CG13631-RA | 2..252 | 18..268 | 1230 | 99.6 | Plus |
CG31247-PD | 4542 | tinc-RD | 3188..3215 | 213..240 | 140 | 100 | Plus |
CG31247-PA | 4542 | tinc-RA | 3188..3215 | 213..240 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13631-RB | 1583 | CG13631-RB | 173..423 | 18..268 | 1240 | 99.6 | Plus |
CG13631-RA | 761 | CG13631-RA | 173..423 | 18..268 | 1240 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24769523..24769773 | 18..268 | 1240 | 99.6 | Plus |
Blast to na_te.dros performed 2015-02-10 18:30:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6813..6865 | 195..248 | 131 | 78.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1068..1124 | 210..265 | 129 | 74.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6835 | 195..251 | 128 | 75.9 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 909..1030 | 130..249 | 128 | 60.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6814 | 195..251 | 119 | 74.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..6791 | 195..249 | 118 | 75 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2353..2391 | 210..249 | 116 | 80 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6770 | 204..249 | 116 | 78.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2794..2841 | 195..242 | 114 | 70.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6824..6884 | 190..249 | 112 | 73 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2372 | 213..251 | 111 | 79.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6839 | 210..265 | 111 | 70.7 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7956..7998 | 207..247 | 111 | 76.7 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 9400..9442 | 207..247 | 111 | 76.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2629..2659 | 207..237 | 110 | 83.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2455..2483 | 210..238 | 109 | 86.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1094..1138 | 194..238 | 108 | 71.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2353..2395 | 195..237 | 107 | 72.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6780 | 213..269 | 107 | 69.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1558..1589 | 213..244 | 106 | 81.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6801 | 210..269 | 104 | 67.7 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 153..199 | 213..257 | 104 | 72.3 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9183..9229 | 213..257 | 104 | 72.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1116..1141 | 213..238 | 103 | 88.5 | Plus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 669..770 | 267..166 | 103 | 60.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2806..2857 | 213..266 | 102 | 70.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6818 | 210..265 | 102 | 69 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1089..1145 | 210..265 | 102 | 69 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1104..1141 | 213..251 | 102 | 76.9 | Plus |
BS15649.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:01 Download gff for
BS15649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13631-PA | 2..252 | 18..268 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:11:39 Download gff for
BS15649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13631-PA | 2..252 | 18..268 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 13:02:43 Download gff for
BS15649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13631-RA | 173..426 | 18..271 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:03:00 Download gff for
BS15649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13631-RA | 173..426 | 18..271 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:03:00 Download gff for
BS15649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24769523..24769776 | 18..271 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 13:02:43 Download gff for
BS15649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20595245..20595498 | 18..271 | 99 | | Plus |
BS15649.3prime Sequence
282 bp (282 high quality bases) assembled on 2006-12-21
> BS15649.3prime
ATGGNCAAGAAACCTTTCTCCTTTGCGTCTCGCCCGCTCGTGCCGCCTGC
CGCTGCTGCTGTTGCTGCTGCTCCTTGTCGCGCAGCTCCTTGATTCCGCC
CACCGTACCGAACATCACCTTGGCCGTCAGCTGGGCGCGGGGCGGACCGC
CGGACTTGCCGCTGGTGGCCGCCTCGCGGTCCAGAGATGCATTCGCATTG
GCGTAGGCGTTGGTGTACGAGACGTAGTTGTTGTTGAGGTCGCGACCGCA
GCTGCACTGATGCGACATGTCAACTGATAACT
BS15649.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13631-PA | 252 | CG13631-RA | 1..241 | 268..28 | 1155 | 99.1 | Minus |
CG31247-PD | 4542 | tinc-RD | 3188..3215 | 72..45 | 140 | 100 | Minus |
CG31247-PA | 4542 | tinc-RA | 3188..3215 | 72..45 | 140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:49:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13631-RB | 1583 | CG13631-RB | 170..412 | 270..28 | 1185 | 99.2 | Minus |
CG13631-RA | 761 | CG13631-RA | 170..412 | 270..28 | 1185 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:49:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24769520..24769762 | 270..28 | 1185 | 99.2 | Minus |
Blast to na_te.dros performed 2015-02-11 15:49:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6813..6865 | 90..37 | 131 | 78.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6835 | 90..34 | 128 | 75.9 | Minus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 909..1050 | 155..13 | 127 | 60.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6831 | 90..17 | 123 | 68 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..6791 | 90..36 | 118 | 75 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1068..1108 | 75..34 | 117 | 78.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2353..2391 | 75..36 | 116 | 80 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6770 | 81..36 | 116 | 78.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2794..2841 | 90..43 | 114 | 70.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2372 | 72..34 | 111 | 79.5 | Minus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7956..7998 | 78..38 | 111 | 76.7 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 9400..9442 | 78..38 | 111 | 76.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6884 | 90..36 | 110 | 69.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2629..2659 | 78..48 | 110 | 83.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2455..2483 | 75..47 | 109 | 86.2 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1090..1141 | 99..47 | 109 | 69.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2353..2395 | 90..48 | 107 | 72.1 | Minus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 676..770 | 24..119 | 107 | 60.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1558..1589 | 72..41 | 106 | 81.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6824 | 75..36 | 106 | 76.2 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1104..1158 | 72..17 | 106 | 67.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6772 | 72..23 | 105 | 72.5 | Minus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 153..199 | 72..28 | 104 | 72.3 | Minus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9183..9229 | 72..28 | 104 | 72.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6793 | 75..23 | 102 | 70.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2806..2846 | 72..34 | 101 | 75.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6790 | 75..47 | 100 | 82.8 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1089..1117 | 75..47 | 100 | 82.8 | Minus |
BS15649.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:00 Download gff for
BS15649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13631-PA | 1..252 | 19..268 | 97 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:11:37 Download gff for
BS15649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13631-PA | 1..252 | 19..268 | 97 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 03:48:44 Download gff for
BS15649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13631-RA | 160..425 | 17..278 | 96 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:07 Download gff for
BS15649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13631-RA | 160..425 | 17..278 | 96 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:07 Download gff for
BS15649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24769510..24769775 | 17..278 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 03:48:44 Download gff for
BS15649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20595232..20595497 | 17..278 | 96 | | Minus |
BS15649.pep Sequence
Translation from 16 to 267
> BS15649.pep
MSHQCSCGRDLNNNYVSYTNAYANANASLDREAATSGKSGGPPRAQLTAK
VMFGTVGAIKELRDKEQQQQQQRQAARAGERRN*
BS15649.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13631-PB | 83 | CG13631-PB | 1..83 | 1..83 | 428 | 100 | Plus |
CG13631-PA | 83 | CG13631-PA | 1..83 | 1..83 | 428 | 100 | Plus |