Clone BS15653 Report

Search the DGRC for BS15653

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:156
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG4210-RB
Protein status:BS15653.pep: full length peptide match
Sequenced Size:461

Clone Sequence Records

BS15653.complete Sequence

461 bp assembled on 2010-02-09

GenBank Submission: KX803218

> BS15653.complete
GAAGTTATCAGTCGACATGAGCAATGGTCCCCAGCTAACAGAGGAAGATC
TTAAACGAGACGCAGGACTCACTGGTGGCCAGGAGTATTGTGAAGTCTAT
GTGCTTGTAGACAACGATACTGATCAGGCGATTGGGTACTCCATTTGCTA
CAAGGCATACTCAACGTGGCAGGGACGGTACTTCTTCGTCGAGGACATCT
ATGTCCGCCCCGAGCACCGTAAACGCGGCGCCGGAAAGCGAATCTTCTTG
GAGGTTGCATCGCGGGCTGTAGAGCTTCAGTGCCCTCGCCTGGAGTTTAA
TGTACTGGAATGGAATCCTGCACGCAAGTTCTACGAAAGTCTTGGTGCCG
TGGATTTGACAGATAAAGAGGGCTGGCACTACTACCGCGTGGAGGAGCAA
CAACTGGCCAAATTGGCCGCGGATCTGAGGGCAAAAAAATCTTAAAAGCT
TTCTAGACCAT

BS15653.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG4210-RA 525 CG4210-PA 97..525 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG4210-RA 682 CG4210-RA 156..584 17..445 2145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:53:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15214426..15214747 124..445 1610 100 Plus
3R 32079331 3R 15214288..15214365 46..123 390 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:53:14 has no hits.

BS15653.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:24 Download gff for BS15653.complete
Subject Subject Range Query Range Percent Splice Strand
CG4210-RA 92..525 10..445 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:26 Download gff for BS15653.complete
Subject Subject Range Query Range Percent Splice Strand
CG4210-RB 218..644 17..443 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:20 Download gff for BS15653.complete
Subject Subject Range Query Range Percent Splice Strand
CG4210-RA 156..582 17..443 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:31 Download gff for BS15653.complete
Subject Subject Range Query Range Percent Splice Strand
CG4210-RB 218..644 17..443 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:18 Download gff for BS15653.complete
Subject Subject Range Query Range Percent Splice Strand
CG4210-RA 156..582 17..443 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:18 Download gff for BS15653.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15214191..15214221 17..47 100 -> Plus
3R 15214290..15214365 48..123 100 -> Plus
3R 15214426..15214745 124..443 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:20 Download gff for BS15653.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11039913..11039943 17..47 100 -> Plus
arm_3R 11040012..11040087 48..123 100 -> Plus
arm_3R 11040148..11040467 124..443 100   Plus

BS15653.3prime Sequence

483 bp (483 high quality bases) assembled on 2006-12-21

> BS15653.3prime
TCCCTTAAGGGGCGCGCCAAACGAATGGTCTAGAAAGCTTTTACCATTTA
GGTGCCCTCAGATCCGCGGCCAATTTGGCCAGTTGTTGCTCCTCCACGCG
GTAGTAGTGCCAGCCCTCTTTATCTGTCAAATCCACGGCACCAAGACTTT
CGTAGAACTTGCGTGCAGGATTCCATTCCAGTACATTAAACTCCAGGCGA
GGGCACTGAAGCTCTACAGCCCGCGATGCAACCTCCAAGAAGATTCGCTT
TCCGGCGCCGCGTTTACGGTGCTCGGGGCGGACATAGATGTCCTCGACGA
AGAAGTACCGTCCCTGCCACGTTGAGTATGCCTTGTAGCAAATGGAGTAC
CCAATCGCCTGATCAGTATCGTTGTCTACAAGCACATAGACTTCACAATA
CTCCTGGCCACCAGTGAGTCCTGCGTCTCGTTTAAGATCTTCCTCTGTTA
GCTGGGGACCATTGCTCATGTCGACTGATAACT

BS15653.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG4210-PA 525 CG4210-RA 97..513 469..53 2085 100 Minus
CG4210-PB 429 CG4210-RB 1..417 469..53 2085 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 03:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG4210-RA 682 CG4210-RA 156..572 469..53 2085 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 03:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15214426..15214735 362..53 1550 100 Minus
3R 32079331 3R 15214288..15214365 440..363 390 100 Minus
Blast to na_te.dros performed on 2015-01-31 03:26:14 has no hits.

BS15653.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:05 Download gff for BS15653.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4210-PA 92..525 41..476 97   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:11:43 Download gff for BS15653.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4210-PB 1..429 41..469 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 20:47:55 Download gff for BS15653.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4210-RA 151..584 41..476 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 05:20:52 Download gff for BS15653.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4210-RA 151..584 41..476 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 05:20:52 Download gff for BS15653.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15214290..15214365 363..438 100 -> Minus
3R 15214426..15214747 41..362 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 20:47:55 Download gff for BS15653.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11040012..11040087 363..438 100 -> Minus
arm_3R 11040148..11040469 41..362 98   Minus

BS15653.5prime Sequence

459 bp (459 high quality bases) assembled on 2006-12-21

> BS15653.5prime
GAAGTTATCCTTTGACGTGAGCAATGGTCCCCAGCTAACAGAGGAAGATC
TTAAACGAGACGCAGGACTCACTGGTGGCCAGGAGTATTGTGAAGTCTAT
GTGCTTGTAGACAACGATACTGATCAGGCGATTGGGTACTCCATTTGCTA
CAAGGCATACTCAACGTGGCAGGGACGGTACTTCTTCGTCGAGGACATCT
ATGTCCGCCCCGAGCACCGTAAACGCGGCGCCGGAAAGCGAATCTTCTTG
GAGGTTGCATCGCGGGCTGTAGAGCTTCAGTGCCCTCGCCTGGAGTTTAA
TGTACTGGAATGGAATCCTGCACGCAAGTTCTACGAAAGTCTTGGTGCCG
TGGATTTGACAGATAAAGAGGGCTGGCACTACTACCGCGTGGAGGAGCAA
CAACTGGCCAAATTGGCCGCGGATCTGAGGGCAAAAAAATCTTAAAAGCT
TTCTAGACC

BS15653.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4210-PA 525 CG4210-RA 98..525 18..445 2140 100 Plus
CG4210-PB 429 CG4210-RB 2..429 18..445 2140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4210-RA 682 CG4210-RA 157..584 18..445 2140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15214426..15214747 124..445 1610 100 Plus
3R 32079331 3R 15214288..15214365 46..123 390 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:54:58 has no hits.

BS15653.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:06 Download gff for BS15653.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4210-PA 87..525 10..445 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:11:45 Download gff for BS15653.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4210-PB 2..429 18..445 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 18:38:15 Download gff for BS15653.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4210-RA 146..587 10..451 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:12:30 Download gff for BS15653.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4210-RA 146..587 10..451 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:12:30 Download gff for BS15653.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15214290..15214365 48..123 100 -> Plus
3R 15214426..15214750 124..451 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 18:38:15 Download gff for BS15653.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11040012..11040087 48..123 100 -> Plus
arm_3R 11040148..11040472 124..451 99   Plus

BS15653.pep Sequence

Translation from 16 to 444

> BS15653.pep
MSNGPQLTEEDLKRDAGLTGGQEYCEVYVLVDNDTDQAIGYSICYKAYST
WQGRYFFVEDIYVRPEHRKRGAGKRIFLEVASRAVELQCPRLEFNVLEWN
PARKFYESLGAVDLTDKEGWHYYRVEEQQLAKLAADLRAKKS*

BS15653.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4210-PA 174 CG4210-PA 33..174 1..142 757 100 Plus