Clone Sequence Records
BS15653.complete Sequence
461 bp assembled on 2010-02-09
GenBank Submission: KX803218
> BS15653.complete
GAAGTTATCAGTCGACATGAGCAATGGTCCCCAGCTAACAGAGGAAGATC
TTAAACGAGACGCAGGACTCACTGGTGGCCAGGAGTATTGTGAAGTCTAT
GTGCTTGTAGACAACGATACTGATCAGGCGATTGGGTACTCCATTTGCTA
CAAGGCATACTCAACGTGGCAGGGACGGTACTTCTTCGTCGAGGACATCT
ATGTCCGCCCCGAGCACCGTAAACGCGGCGCCGGAAAGCGAATCTTCTTG
GAGGTTGCATCGCGGGCTGTAGAGCTTCAGTGCCCTCGCCTGGAGTTTAA
TGTACTGGAATGGAATCCTGCACGCAAGTTCTACGAAAGTCTTGGTGCCG
TGGATTTGACAGATAAAGAGGGCTGGCACTACTACCGCGTGGAGGAGCAA
CAACTGGCCAAATTGGCCGCGGATCTGAGGGCAAAAAAATCTTAAAAGCT
TTCTAGACCAT
BS15653.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:53:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4210-RA | 525 | CG4210-PA | 97..525 | 17..445 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:53:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4210-RA | 682 | CG4210-RA | 156..584 | 17..445 | 2145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:53:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15214426..15214747 | 124..445 | 1610 | 100 | Plus |
3R | 32079331 | 3R | 15214288..15214365 | 46..123 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:53:14 has no hits.
BS15653.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:24 Download gff for
BS15653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-RA | 92..525 | 10..445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:26 Download gff for
BS15653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-RB | 218..644 | 17..443 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:20 Download gff for
BS15653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-RA | 156..582 | 17..443 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:31 Download gff for
BS15653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-RB | 218..644 | 17..443 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:18 Download gff for
BS15653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-RA | 156..582 | 17..443 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:18 Download gff for
BS15653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15214191..15214221 | 17..47 | 100 | -> | Plus |
3R | 15214290..15214365 | 48..123 | 100 | -> | Plus |
3R | 15214426..15214745 | 124..443 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:20 Download gff for
BS15653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11039913..11039943 | 17..47 | 100 | -> | Plus |
arm_3R | 11040012..11040087 | 48..123 | 100 | -> | Plus |
arm_3R | 11040148..11040467 | 124..443 | 100 | | Plus |
BS15653.3prime Sequence
483 bp (483 high quality bases) assembled on 2006-12-21
> BS15653.3prime
TCCCTTAAGGGGCGCGCCAAACGAATGGTCTAGAAAGCTTTTACCATTTA
GGTGCCCTCAGATCCGCGGCCAATTTGGCCAGTTGTTGCTCCTCCACGCG
GTAGTAGTGCCAGCCCTCTTTATCTGTCAAATCCACGGCACCAAGACTTT
CGTAGAACTTGCGTGCAGGATTCCATTCCAGTACATTAAACTCCAGGCGA
GGGCACTGAAGCTCTACAGCCCGCGATGCAACCTCCAAGAAGATTCGCTT
TCCGGCGCCGCGTTTACGGTGCTCGGGGCGGACATAGATGTCCTCGACGA
AGAAGTACCGTCCCTGCCACGTTGAGTATGCCTTGTAGCAAATGGAGTAC
CCAATCGCCTGATCAGTATCGTTGTCTACAAGCACATAGACTTCACAATA
CTCCTGGCCACCAGTGAGTCCTGCGTCTCGTTTAAGATCTTCCTCTGTTA
GCTGGGGACCATTGCTCATGTCGACTGATAACT
BS15653.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4210-PA | 525 | CG4210-RA | 97..513 | 469..53 | 2085 | 100 | Minus |
CG4210-PB | 429 | CG4210-RB | 1..417 | 469..53 | 2085 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 03:26:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4210-RA | 682 | CG4210-RA | 156..572 | 469..53 | 2085 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 03:26:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15214426..15214735 | 362..53 | 1550 | 100 | Minus |
3R | 32079331 | 3R | 15214288..15214365 | 440..363 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 03:26:14 has no hits.
BS15653.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:05 Download gff for
BS15653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-PA | 92..525 | 41..476 | 97 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:11:43 Download gff for
BS15653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-PB | 1..429 | 41..469 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 20:47:55 Download gff for
BS15653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-RA | 151..584 | 41..476 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 05:20:52 Download gff for
BS15653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-RA | 151..584 | 41..476 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 05:20:52 Download gff for
BS15653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15214290..15214365 | 363..438 | 100 | -> | Minus |
3R | 15214426..15214747 | 41..362 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 20:47:55 Download gff for
BS15653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11040012..11040087 | 363..438 | 100 | -> | Minus |
arm_3R | 11040148..11040469 | 41..362 | 98 | | Minus |
BS15653.5prime Sequence
459 bp (459 high quality bases) assembled on 2006-12-21
> BS15653.5prime
GAAGTTATCCTTTGACGTGAGCAATGGTCCCCAGCTAACAGAGGAAGATC
TTAAACGAGACGCAGGACTCACTGGTGGCCAGGAGTATTGTGAAGTCTAT
GTGCTTGTAGACAACGATACTGATCAGGCGATTGGGTACTCCATTTGCTA
CAAGGCATACTCAACGTGGCAGGGACGGTACTTCTTCGTCGAGGACATCT
ATGTCCGCCCCGAGCACCGTAAACGCGGCGCCGGAAAGCGAATCTTCTTG
GAGGTTGCATCGCGGGCTGTAGAGCTTCAGTGCCCTCGCCTGGAGTTTAA
TGTACTGGAATGGAATCCTGCACGCAAGTTCTACGAAAGTCTTGGTGCCG
TGGATTTGACAGATAAAGAGGGCTGGCACTACTACCGCGTGGAGGAGCAA
CAACTGGCCAAATTGGCCGCGGATCTGAGGGCAAAAAAATCTTAAAAGCT
TTCTAGACC
BS15653.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4210-PA | 525 | CG4210-RA | 98..525 | 18..445 | 2140 | 100 | Plus |
CG4210-PB | 429 | CG4210-RB | 2..429 | 18..445 | 2140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:55:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4210-RA | 682 | CG4210-RA | 157..584 | 18..445 | 2140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:54:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15214426..15214747 | 124..445 | 1610 | 100 | Plus |
3R | 32079331 | 3R | 15214288..15214365 | 46..123 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:54:58 has no hits.
BS15653.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:06 Download gff for
BS15653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-PA | 87..525 | 10..445 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:11:45 Download gff for
BS15653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-PB | 2..429 | 18..445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 18:38:15 Download gff for
BS15653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-RA | 146..587 | 10..451 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:12:30 Download gff for
BS15653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-RA | 146..587 | 10..451 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:12:30 Download gff for
BS15653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15214290..15214365 | 48..123 | 100 | -> | Plus |
3R | 15214426..15214750 | 124..451 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 18:38:15 Download gff for
BS15653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11040012..11040087 | 48..123 | 100 | -> | Plus |
arm_3R | 11040148..11040472 | 124..451 | 99 | | Plus |
BS15653.pep Sequence
Translation from 16 to 444
> BS15653.pep
MSNGPQLTEEDLKRDAGLTGGQEYCEVYVLVDNDTDQAIGYSICYKAYST
WQGRYFFVEDIYVRPEHRKRGAGKRIFLEVASRAVELQCPRLEFNVLEWN
PARKFYESLGAVDLTDKEGWHYYRVEEQQLAKLAADLRAKKS*
BS15653.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:59:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4210-PA | 174 | CG4210-PA | 33..174 | 1..142 | 757 | 100 | Plus |