Clone BS15656 Report

Search the DGRC for BS15656

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:156
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG13616-RA
Protein status:BS15656.pep: full length peptide match
Sequenced Size:728

Clone Sequence Records

BS15656.complete Sequence

728 bp assembled on 2010-02-09

GenBank Submission: KX801050

> BS15656.complete
GAAGTTATCAGTCGACATGAGGCTCTCTCGAACTGGCCACTTCAGTTTGC
TGGCACTTTGCCTCCTGCTGCACGAGGTGCAATCCCAGGTGATGTCCATG
TCATCAGCTGCCAACCGGACAGGGGAGGTGACCAAAGTTCTGCGCCGGCA
CAAGCGTTATCTGGCATTTCCGGAGGGCTCATCGGTTTCGGGCGCCGTTT
GCATGACGATCGGCATGATTGGCAATCCAGATGTTGACTATCTCAGCTGG
GCGGTCAACTGGGGCGTGGCATACGATCTGCCCAACCATCAGTGGGTCAT
CCAACACGCCCATGGACTGAACGCCACCCTGGCCAAGGATACCATTAAGC
GGCGATCCCGGCGAGCTTTTTACGATGAGGTGCAGTCTTTATTTGATAAC
ATGGGTTTCAATGGTCGTTCGTGTGTGGCTCGAGCTCTATGCGAAAGTGC
CAAGTTCATGTTGCCGTCGGTGGAACGGGGAAACATGTTGCAGGAGTTGG
TCAGGACTGTCTTTAGCCTGCCTCCCTCCCCGGTGGCTGCCCACGAACCA
CAAGCCCATCATCAGTATGATCGAATCTACCGTCGATCCAAGCGGAGCTC
ACGGGATTGCCATGAAATCTATCCAGGATGTCAGTTTTCACTACTGGCTT
TGGCATTGGGCAAATATATGGCGGCCACAACCACGAAGTTTAGTTCATTT
AACTATATGTGAAAGCTTTCTAGACCAT

BS15656.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13616-RA 696 CG13616-PA 1..696 17..712 3480 100 Plus
CG13616-RB 192 CG13616-PB 1..192 17..206 895 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13616-RA 750 CG13616-RA 34..733 16..715 3500 100 Plus
CG13616-RB 752 CG13616-RB 34..735 16..715 3445 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:20:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24393430..24393745 400..715 1580 100 Plus
3R 32079331 3R 24393159..24393368 190..399 1050 100 Plus
3R 32079331 3R 24392922..24393097 16..191 880 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:20:54 has no hits.

BS15656.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:25 Download gff for BS15656.complete
Subject Subject Range Query Range Percent Splice Strand
CG13616-RA 1..696 17..712 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:16 Download gff for BS15656.complete
Subject Subject Range Query Range Percent Splice Strand
CG13616-RA 14..708 17..711 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:19 Download gff for BS15656.complete
Subject Subject Range Query Range Percent Splice Strand
CG13616-RA 35..729 17..711 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:44:54 Download gff for BS15656.complete
Subject Subject Range Query Range Percent Splice Strand
CG13616-RA 14..708 17..711 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:16 Download gff for BS15656.complete
Subject Subject Range Query Range Percent Splice Strand
CG13616-RA 35..729 17..711 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:16 Download gff for BS15656.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24392923..24393096 17..190 100 -> Plus
3R 24393160..24393368 191..399 100 -> Plus
3R 24393430..24393741 400..711 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:19 Download gff for BS15656.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20218645..20218818 17..190 100 -> Plus
arm_3R 20218882..20219090 191..399 100 -> Plus
arm_3R 20219152..20219463 400..711 100   Plus

BS15656.5prime Sequence

726 bp (726 high quality bases) assembled on 2006-12-21

> BS15656.5prime
GAAGTTATCCTTTGACATGAGGCTCTCTCGAACTGGCCACTTCAGTTTGC
TGGCACTTTGCCTCCTGCTGCACGAGGTGCAATCCCAGGTGATGTCCATG
TCATCAGCTGCCAACCGGACAGGGGAGGTGACCAAAGTTCTGCGCCGGCA
CAAGCGTTATCTGGCATTTCCGGAGGGCTCATCGGTTTCGGGCGCCGTTT
GCATGACGATCGGCATGATTGGCAATCCAGATGTTGACTATCTCAGCTGG
GCGGTCAACTGGGGCGTGGCATACGATCTGCCCAACCATCAGTGGGTCAT
CCAACACGCCCATGGACTGAACGCCACCCTGGCCAAGGATACCATTAAGC
GGCGATCCCGGCGAGCTTTTTACGATGAGGTGCAGTCTTTATTTGATAAC
ATGGGTTTCAATGGTCGTTCGTGTGTGGCTCGAGCTCTATGCGAAAGTGC
CAAGTTCATGTTGCCGTCGGTGGAACGGGGAAACATGTTGCAGGAGTTGG
TCAGGACTGTCTTTAGCCTGCCTCCCTCCCCGGTGGCTGCCCACGAACCA
CAAGCCCATCATCAGTATGATCGAATCTACCGTCGATCCAAGCGGAGCTC
ACGGGATTGCCATGAAATCTATCCAGGATGTCAGTTTTCACTACTGGCTT
TGGCATTGGGCAAATATATGGCGGCCACAACCACGAAGTTTAGTTCATTT
AACTATATGTGAAAGCTTTCTAGACC

BS15656.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13616-PA 696 CG13616-RA 1..696 17..712 3480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG13616-RA 750 CG13616-RA 34..733 16..715 3500 100 Plus
CG13616-RB 752 CG13616-RB 34..735 16..715 3470 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24393430..24393745 400..715 1580 100 Plus
3R 32079331 3R 24393159..24393368 190..399 1050 100 Plus
3R 32079331 3R 24392922..24393097 16..191 880 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:19:53 has no hits.

BS15656.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:12 Download gff for BS15656.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13616-PA 1..696 17..712 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:11:53 Download gff for BS15656.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13616-PA 1..696 17..712 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:27:53 Download gff for BS15656.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13616-RA 34..733 16..715 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:51:28 Download gff for BS15656.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13616-RA 34..733 16..715 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:51:28 Download gff for BS15656.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24392922..24393096 16..190 100 -> Plus
3R 24393160..24393368 191..399 100 -> Plus
3R 24393430..24393745 400..715 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:27:53 Download gff for BS15656.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20219152..20219467 400..715 100   Plus
arm_3R 20218644..20218818 16..190 100 -> Plus
arm_3R 20218882..20219090 191..399 100 -> Plus

BS15656.3prime Sequence

750 bp (750 high quality bases) assembled on 2006-12-21

> BS15656.3prime
TCCCATAAGGGGCGCGCCAAACGAATGGTCTAGAAAGCTTTCACCTTTAG
TGAAATGAACTAAACTTCGTGGTTGTGGCCGCCATATATTTGCCCAATGC
CAAAGCCAGTAGTGAAAACTGACATCCTGGATAGATTTCATGGCAATCCC
GTGAGCTCCGCTTGGATCGACGGTAGATTCGATCATACTGATGATGGGCT
TGTGGTTCGTGGGCAGCCACCGGGGAGGGAGGCAGGCTAAAGACAGTCCT
GACCAACTCCTGCAACATGTTTCCCCGTTCCACCGACGGCAACATGAACT
TGGCACTTTCGCATAGAGCTCGAGCCACACACGAACGACCATTGAAACCC
ATGTTATCAAATAAAGACTGCACCTCATCGTAAAAAGCTCGCCGGGATCG
CCGCTTAATGGTATCCTTGGCCAGGGTGGCGTTCAGTCCATGGGCGTGTT
GGATGACCCACTGATGGTTGGGCAGATCGTATGCCACGCCCCAGTTGACC
GCCCAGCTGAGATAGTCAACATCTGGATTGCCAATCATGCCGATCGTCAT
GCAAACGGCGCCCGAAACCGATGAGCCCTCCGGAAATGCCAGATAACGCT
TGTGCCGGCGCAGAACTTTGGTCACCTCCCCTGTCCGGTTGGCAGCTGAT
GACATGGACATCACCTGGGATTGCACCTCGTGCAGCAGGAGGCAAAGTGC
CAGCAAACTGAAGTGGCCAGTTCGAGAGAGCCTCATGTCGACTGATAACT

BS15656.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13616-PA 696 CG13616-RA 1..684 736..53 3420 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:30:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13616-RA 750 CG13616-RA 34..733 737..38 3455 99.6 Minus
CG13616-RB 752 CG13616-RB 34..735 737..38 3425 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 04:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24393430..24393745 353..38 1535 99.1 Minus
3R 32079331 3R 24393159..24393368 563..354 1050 100 Minus
3R 32079331 3R 24392922..24393097 737..562 880 100 Minus
Blast to na_te.dros performed on 2015-01-30 04:30:53 has no hits.

BS15656.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:11 Download gff for BS15656.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13616-PA 1..696 41..736 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:11:52 Download gff for BS15656.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13616-PA 1..696 41..736 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:31:58 Download gff for BS15656.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13616-RA 34..733 38..737 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 06:46:42 Download gff for BS15656.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13616-RA 34..733 38..737 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 06:46:42 Download gff for BS15656.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24392922..24393096 563..737 100 -> Minus
3R 24393430..24393745 38..353 99   Minus
3R 24393160..24393368 354..562 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:31:58 Download gff for BS15656.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20218644..20218818 563..737 100 -> Minus
arm_3R 20218882..20219090 354..562 100 -> Minus
arm_3R 20219152..20219467 38..353 99   Minus

BS15656.pep Sequence

Translation from 16 to 711

> BS15656.pep
MRLSRTGHFSLLALCLLLHEVQSQVMSMSSAANRTGEVTKVLRRHKRYLA
FPEGSSVSGAVCMTIGMIGNPDVDYLSWAVNWGVAYDLPNHQWVIQHAHG
LNATLAKDTIKRRSRRAFYDEVQSLFDNMGFNGRSCVARALCESAKFMLP
SVERGNMLQELVRTVFSLPPSPVAAHEPQAHHQYDRIYRRSKRSSRDCHE
IYPGCQFSLLALALGKYMAATTTKFSSFNYM*

BS15656.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13616-PA 231 CG13616-PA 1..231 1..231 1214 100 Plus
CG5768-PC 262 CG5768-PC 80..253 42..217 411 47.8 Plus
CG5768-PD 262 CG5768-PD 80..253 42..217 405 46.7 Plus
CG13616-PB 63 CG13616-PB 1..60 1..60 287 98.3 Plus