Clone Sequence Records
BS15656.complete Sequence
728 bp assembled on 2010-02-09
GenBank Submission: KX801050
> BS15656.complete
GAAGTTATCAGTCGACATGAGGCTCTCTCGAACTGGCCACTTCAGTTTGC
TGGCACTTTGCCTCCTGCTGCACGAGGTGCAATCCCAGGTGATGTCCATG
TCATCAGCTGCCAACCGGACAGGGGAGGTGACCAAAGTTCTGCGCCGGCA
CAAGCGTTATCTGGCATTTCCGGAGGGCTCATCGGTTTCGGGCGCCGTTT
GCATGACGATCGGCATGATTGGCAATCCAGATGTTGACTATCTCAGCTGG
GCGGTCAACTGGGGCGTGGCATACGATCTGCCCAACCATCAGTGGGTCAT
CCAACACGCCCATGGACTGAACGCCACCCTGGCCAAGGATACCATTAAGC
GGCGATCCCGGCGAGCTTTTTACGATGAGGTGCAGTCTTTATTTGATAAC
ATGGGTTTCAATGGTCGTTCGTGTGTGGCTCGAGCTCTATGCGAAAGTGC
CAAGTTCATGTTGCCGTCGGTGGAACGGGGAAACATGTTGCAGGAGTTGG
TCAGGACTGTCTTTAGCCTGCCTCCCTCCCCGGTGGCTGCCCACGAACCA
CAAGCCCATCATCAGTATGATCGAATCTACCGTCGATCCAAGCGGAGCTC
ACGGGATTGCCATGAAATCTATCCAGGATGTCAGTTTTCACTACTGGCTT
TGGCATTGGGCAAATATATGGCGGCCACAACCACGAAGTTTAGTTCATTT
AACTATATGTGAAAGCTTTCTAGACCAT
BS15656.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:20:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13616-RA | 696 | CG13616-PA | 1..696 | 17..712 | 3480 | 100 | Plus |
CG13616-RB | 192 | CG13616-PB | 1..192 | 17..206 | 895 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:20:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13616-RA | 750 | CG13616-RA | 34..733 | 16..715 | 3500 | 100 | Plus |
CG13616-RB | 752 | CG13616-RB | 34..735 | 16..715 | 3445 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:20:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24393430..24393745 | 400..715 | 1580 | 100 | Plus |
3R | 32079331 | 3R | 24393159..24393368 | 190..399 | 1050 | 100 | Plus |
3R | 32079331 | 3R | 24392922..24393097 | 16..191 | 880 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:20:54 has no hits.
BS15656.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:25 Download gff for
BS15656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13616-RA | 1..696 | 17..712 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:16 Download gff for
BS15656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13616-RA | 14..708 | 17..711 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:19 Download gff for
BS15656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13616-RA | 35..729 | 17..711 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:44:54 Download gff for
BS15656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13616-RA | 14..708 | 17..711 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:16 Download gff for
BS15656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13616-RA | 35..729 | 17..711 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:16 Download gff for
BS15656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24392923..24393096 | 17..190 | 100 | -> | Plus |
3R | 24393160..24393368 | 191..399 | 100 | -> | Plus |
3R | 24393430..24393741 | 400..711 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:19 Download gff for
BS15656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20218645..20218818 | 17..190 | 100 | -> | Plus |
arm_3R | 20218882..20219090 | 191..399 | 100 | -> | Plus |
arm_3R | 20219152..20219463 | 400..711 | 100 | | Plus |
BS15656.5prime Sequence
726 bp (726 high quality bases) assembled on 2006-12-21
> BS15656.5prime
GAAGTTATCCTTTGACATGAGGCTCTCTCGAACTGGCCACTTCAGTTTGC
TGGCACTTTGCCTCCTGCTGCACGAGGTGCAATCCCAGGTGATGTCCATG
TCATCAGCTGCCAACCGGACAGGGGAGGTGACCAAAGTTCTGCGCCGGCA
CAAGCGTTATCTGGCATTTCCGGAGGGCTCATCGGTTTCGGGCGCCGTTT
GCATGACGATCGGCATGATTGGCAATCCAGATGTTGACTATCTCAGCTGG
GCGGTCAACTGGGGCGTGGCATACGATCTGCCCAACCATCAGTGGGTCAT
CCAACACGCCCATGGACTGAACGCCACCCTGGCCAAGGATACCATTAAGC
GGCGATCCCGGCGAGCTTTTTACGATGAGGTGCAGTCTTTATTTGATAAC
ATGGGTTTCAATGGTCGTTCGTGTGTGGCTCGAGCTCTATGCGAAAGTGC
CAAGTTCATGTTGCCGTCGGTGGAACGGGGAAACATGTTGCAGGAGTTGG
TCAGGACTGTCTTTAGCCTGCCTCCCTCCCCGGTGGCTGCCCACGAACCA
CAAGCCCATCATCAGTATGATCGAATCTACCGTCGATCCAAGCGGAGCTC
ACGGGATTGCCATGAAATCTATCCAGGATGTCAGTTTTCACTACTGGCTT
TGGCATTGGGCAAATATATGGCGGCCACAACCACGAAGTTTAGTTCATTT
AACTATATGTGAAAGCTTTCTAGACC
BS15656.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13616-PA | 696 | CG13616-RA | 1..696 | 17..712 | 3480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:19:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13616-RA | 750 | CG13616-RA | 34..733 | 16..715 | 3500 | 100 | Plus |
CG13616-RB | 752 | CG13616-RB | 34..735 | 16..715 | 3470 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:19:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24393430..24393745 | 400..715 | 1580 | 100 | Plus |
3R | 32079331 | 3R | 24393159..24393368 | 190..399 | 1050 | 100 | Plus |
3R | 32079331 | 3R | 24392922..24393097 | 16..191 | 880 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:19:53 has no hits.
BS15656.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:12 Download gff for
BS15656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13616-PA | 1..696 | 17..712 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:11:53 Download gff for
BS15656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13616-PA | 1..696 | 17..712 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:27:53 Download gff for
BS15656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13616-RA | 34..733 | 16..715 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:51:28 Download gff for
BS15656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13616-RA | 34..733 | 16..715 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:51:28 Download gff for
BS15656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24392922..24393096 | 16..190 | 100 | -> | Plus |
3R | 24393160..24393368 | 191..399 | 100 | -> | Plus |
3R | 24393430..24393745 | 400..715 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:27:53 Download gff for
BS15656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20219152..20219467 | 400..715 | 100 | | Plus |
arm_3R | 20218644..20218818 | 16..190 | 100 | -> | Plus |
arm_3R | 20218882..20219090 | 191..399 | 100 | -> | Plus |
BS15656.3prime Sequence
750 bp (750 high quality bases) assembled on 2006-12-21
> BS15656.3prime
TCCCATAAGGGGCGCGCCAAACGAATGGTCTAGAAAGCTTTCACCTTTAG
TGAAATGAACTAAACTTCGTGGTTGTGGCCGCCATATATTTGCCCAATGC
CAAAGCCAGTAGTGAAAACTGACATCCTGGATAGATTTCATGGCAATCCC
GTGAGCTCCGCTTGGATCGACGGTAGATTCGATCATACTGATGATGGGCT
TGTGGTTCGTGGGCAGCCACCGGGGAGGGAGGCAGGCTAAAGACAGTCCT
GACCAACTCCTGCAACATGTTTCCCCGTTCCACCGACGGCAACATGAACT
TGGCACTTTCGCATAGAGCTCGAGCCACACACGAACGACCATTGAAACCC
ATGTTATCAAATAAAGACTGCACCTCATCGTAAAAAGCTCGCCGGGATCG
CCGCTTAATGGTATCCTTGGCCAGGGTGGCGTTCAGTCCATGGGCGTGTT
GGATGACCCACTGATGGTTGGGCAGATCGTATGCCACGCCCCAGTTGACC
GCCCAGCTGAGATAGTCAACATCTGGATTGCCAATCATGCCGATCGTCAT
GCAAACGGCGCCCGAAACCGATGAGCCCTCCGGAAATGCCAGATAACGCT
TGTGCCGGCGCAGAACTTTGGTCACCTCCCCTGTCCGGTTGGCAGCTGAT
GACATGGACATCACCTGGGATTGCACCTCGTGCAGCAGGAGGCAAAGTGC
CAGCAAACTGAAGTGGCCAGTTCGAGAGAGCCTCATGTCGACTGATAACT
BS15656.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13616-PA | 696 | CG13616-RA | 1..684 | 736..53 | 3420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:30:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13616-RA | 750 | CG13616-RA | 34..733 | 737..38 | 3455 | 99.6 | Minus |
CG13616-RB | 752 | CG13616-RB | 34..735 | 737..38 | 3425 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 04:30:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24393430..24393745 | 353..38 | 1535 | 99.1 | Minus |
3R | 32079331 | 3R | 24393159..24393368 | 563..354 | 1050 | 100 | Minus |
3R | 32079331 | 3R | 24392922..24393097 | 737..562 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 04:30:53 has no hits.
BS15656.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:11 Download gff for
BS15656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13616-PA | 1..696 | 41..736 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:11:52 Download gff for
BS15656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13616-PA | 1..696 | 41..736 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:31:58 Download gff for
BS15656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13616-RA | 34..733 | 38..737 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 06:46:42 Download gff for
BS15656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13616-RA | 34..733 | 38..737 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 06:46:42 Download gff for
BS15656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24392922..24393096 | 563..737 | 100 | -> | Minus |
3R | 24393430..24393745 | 38..353 | 99 | | Minus |
3R | 24393160..24393368 | 354..562 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:31:58 Download gff for
BS15656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20218644..20218818 | 563..737 | 100 | -> | Minus |
arm_3R | 20218882..20219090 | 354..562 | 100 | -> | Minus |
arm_3R | 20219152..20219467 | 38..353 | 99 | | Minus |
BS15656.pep Sequence
Translation from 16 to 711
> BS15656.pep
MRLSRTGHFSLLALCLLLHEVQSQVMSMSSAANRTGEVTKVLRRHKRYLA
FPEGSSVSGAVCMTIGMIGNPDVDYLSWAVNWGVAYDLPNHQWVIQHAHG
LNATLAKDTIKRRSRRAFYDEVQSLFDNMGFNGRSCVARALCESAKFMLP
SVERGNMLQELVRTVFSLPPSPVAAHEPQAHHQYDRIYRRSKRSSRDCHE
IYPGCQFSLLALALGKYMAATTTKFSSFNYM*
BS15656.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:59:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13616-PA | 231 | CG13616-PA | 1..231 | 1..231 | 1214 | 100 | Plus |
CG5768-PC | 262 | CG5768-PC | 80..253 | 42..217 | 411 | 47.8 | Plus |
CG5768-PD | 262 | CG5768-PD | 80..253 | 42..217 | 405 | 46.7 | Plus |
CG13616-PB | 63 | CG13616-PB | 1..60 | 1..60 | 287 | 98.3 | Plus |