Clone Sequence Records
BS15662.complete Sequence
224 bp assembled on 2010-02-09
GenBank Submission: KX803960
> BS15662.complete
GAAGTTATCAGTCGACATGTCGTGGCGACGGTACGTGCGGCCAAACAAAT
TACAGGGAAATTGCGTCACCTGCAGGAATTTCCACTCGACATTGTCAAAT
GCCATCAGAAATCGCTGGACATGTTGTAACATTAATTTGACATTTTACGG
CCCAGGACGGGGATCGTCGACGGGAATGAGACCGCAGAGCAACGCAGGAC
AACGTTAAAAGCTTTCTAGACCAT
BS15662.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:52:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31517-RB | 192 | CG31517-PB | 1..192 | 17..208 | 960 | 100 | Plus |
CG31517-RA | 192 | CG31517-PA | 1..192 | 17..208 | 960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:52:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31517-RB | 1185 | CG31517-RB | 415..608 | 16..209 | 970 | 100 | Plus |
CG31517-RA | 827 | CG31517-RA | 415..608 | 16..209 | 970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:52:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13948834..13948998 | 16..180 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:52:32 has no hits.
BS15662.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:44 Download gff for
BS15662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31517-RA | 401..590 | 17..206 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:13 Download gff for
BS15662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31517-RA | 401..590 | 17..206 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:01 Download gff for
BS15662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31517-RA | 401..590 | 17..206 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:31 Download gff for
BS15662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31517-RA | 416..605 | 17..206 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:31 Download gff for
BS15662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13948835..13948998 | 17..180 | 100 | -> | Plus |
3R | 13949083..13949108 | 181..206 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:13 Download gff for
BS15662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9774557..9774720 | 17..180 | 100 | -> | Plus |
arm_3R | 9774805..9774830 | 181..206 | 100 | | Plus |
BS15662.3prime Sequence
222 bp (222 high quality bases) assembled on 2006-12-21
> BS15662.3prime
ATGGTCTAGAAAGCTTTTACCTTTGTCCTGCGTTGCTCTGCGGTCTCATT
CCCGTCGACGATCCCCGTCCTGGGCCGTAAAATGTCAAATTAATGTTACA
ACATGTCCAGCGATTTCTGATGGCATTTGACAATGTCGAGTGGAAATTCC
TGCAGGTGACGCAATTTCCCTGTAATTTGTTTGGCCGCACGTACCGTCGC
CACGACATGTCGACTGATAACT
BS15662.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31517-PA | 192 | CG31517-RA | 1..186 | 208..23 | 930 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:26:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31517-RB | 1185 | CG31517-RB | 415..608 | 209..16 | 940 | 99 | Minus |
CG31517-RA | 827 | CG31517-RA | 415..608 | 209..16 | 940 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:26:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13948834..13948998 | 209..45 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:26:31 has no hits.
BS15662.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:21 Download gff for
BS15662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31517-PA | 1..192 | 17..208 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:12:06 Download gff for
BS15662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31517-PA | 1..192 | 17..208 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:29:43 Download gff for
BS15662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31517-RA | 400..593 | 16..209 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:52:18 Download gff for
BS15662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31517-RA | 415..608 | 16..209 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:52:18 Download gff for
BS15662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13948834..13948998 | 45..209 | 100 | -> | Minus |
3R | 13949083..13949111 | 16..44 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:29:43 Download gff for
BS15662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9774556..9774720 | 45..209 | 100 | -> | Minus |
arm_3R | 9774805..9774833 | 16..44 | 93 | | Minus |
BS15662.5prime Sequence
222 bp (222 high quality bases) assembled on 2006-12-21
> BS15662.5prime
GAAGTTATCCTTCGACATGTCGTGGCGACGGTACGTGCGGCCAAACAAAT
TACAGGGAAATTGCGTCACCTGCAGGAATTTCCACTCGACATTGTCAAAT
GCCATCAGAAATCGCTGGACATGTTGTAACATTAATTTGACATTTTACGG
CCCAGGACGGGGATCGTCGACGGGAATGAGACCGCAGAGCAACGCAGGAC
AACGTTAAAAGCTTTCTAGACC
BS15662.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31517-PA | 192 | CG31517-RA | 1..192 | 17..208 | 960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:22:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31517-RB | 1185 | CG31517-RB | 415..608 | 16..209 | 970 | 100 | Plus |
CG31517-RA | 827 | CG31517-RA | 415..608 | 16..209 | 970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:22:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13948834..13948998 | 16..180 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:22:12 has no hits.
BS15662.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:22 Download gff for
BS15662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31517-PA | 1..192 | 17..208 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:12:07 Download gff for
BS15662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31517-PA | 1..192 | 17..208 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 23:32:57 Download gff for
BS15662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31517-RA | 400..593 | 16..209 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:29:48 Download gff for
BS15662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31517-RA | 415..608 | 16..209 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:29:48 Download gff for
BS15662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13948834..13948998 | 16..180 | 100 | -> | Plus |
3R | 13949083..13949111 | 181..209 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 23:32:57 Download gff for
BS15662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9774556..9774720 | 16..180 | 100 | -> | Plus |
arm_3R | 9774805..9774833 | 181..209 | 100 | | Plus |
BS15662.pep Sequence
Translation from 16 to 207
> BS15662.pep
MSWRRYVRPNKLQGNCVTCRNFHSTLSNAIRNRWTCCNINLTFYGPGRGS
STGMRPQSNAGQR*
BS15662.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:13:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31517-PB | 63 | CG31517-PB | 1..63 | 1..63 | 357 | 100 | Plus |
CG31517-PA | 63 | CG31517-PA | 1..63 | 1..63 | 357 | 100 | Plus |