Clone BS15663 Report

Search the DGRC for BS15663

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:156
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptVhaM9.7-c-RA
Protein status:BS15663.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15663.3prime Sequence

306 bp (306 high quality bases) assembled on 2006-12-21

> BS15663.3prime
GTAAGGGGGCGCGCCAAANGAAGGGNCNAGAAAGCNTTTACCCTTCCGGG
ATGGGATTTCCCCAGGACGAGGCAATGATCCGAATGGTGTTTCCATTGAG
TTTCGGCCCCAGCAGTGTATTCAGTTGCGCCAAATAGCAGCACAGCCAGA
AAAGCCAGCAGACGACGGCGGTCAGAAGGAAAATGCAGCGCACCAGGTCA
TCGTGCGGTTGCTTGGTGAACAGAATGGGTCCGTACTTGGCCACCGCCGC
CCAGAAGATGGTGAAGAAGACGATTGTTAGGAAAACTTCCATGTCGACTG
ATAACT

BS15663.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11589-PA 255 VhaM9.7-1-RA 1..243 292..50 1190 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
VhaM9.7-c-RA 848 CG11589-RA 97..340 293..50 1205 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4186526..4186769 50..293 1205 99.6 Plus
Blast to na_te.dros performed on 2015-02-10 21:06:31 has no hits.

BS15663.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:24 Download gff for BS15663.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11589-PA 1..255 38..292 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:12:09 Download gff for BS15663.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11589-PA 1..255 38..292 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 16:40:48 Download gff for BS15663.3prime
Subject Subject Range Query Range Percent Splice Strand
VhaM9.7-c-RA 90..352 38..300 96   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:12 Download gff for BS15663.3prime
Subject Subject Range Query Range Percent Splice Strand
VhaM9.7-c-RA 90..352 38..300 96   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:12 Download gff for BS15663.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4186514..4186773 38..300 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 16:40:48 Download gff for BS15663.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4186514..4186773 38..300 96   Plus

BS15663.5prime Sequence

285 bp (285 high quality bases) assembled on 2006-12-21

> BS15663.5prime
GAAGATATCCTTTAACATGGAAGTTTTCCTAACAATCGTCTTCTTCACCA
TCTTCTGGGCGGCGGTGGCCAAGTACGGACCCATTCTGTTCACCAAGCAA
CCGCACGATGACCTGGTGCGCTGCATTTTCCTTCTGACCGCCGTCGTCTG
CTGGCTTTTCTGGCTGTGCTGCTATTTGGCGCAACTGAATCCACTGCTGG
GGCCGAAACTCAATGGAAACACCATTCGGATCATTGCCTCGTCCTGGGGA
AATCCCATCAAGGAGGGATAAAAGCTTTCTAGACC

BS15663.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11589-PA 255 VhaM9.7-1-RA 1..255 17..271 1275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 08:03:48
Subject Length Description Subject Range Query Range Score Percent Strand
VhaM9.7-c-RA 848 CG11589-RA 97..352 16..271 1280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 08:03:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4186514..4186769 271..16 1280 100 Minus
Blast to na_te.dros performed on 2015-02-11 08:03:47 has no hits.

BS15663.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:25 Download gff for BS15663.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11589-PA 1..255 17..271 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:12:11 Download gff for BS15663.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11589-PA 1..255 17..271 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 13:17:20 Download gff for BS15663.5prime
Subject Subject Range Query Range Percent Splice Strand
VhaM9.7-c-RA 97..352 16..271 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:44:35 Download gff for BS15663.5prime
Subject Subject Range Query Range Percent Splice Strand
VhaM9.7-c-RA 97..352 16..271 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:44:35 Download gff for BS15663.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4186514..4186769 16..271 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 13:17:20 Download gff for BS15663.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4186514..4186769 16..271 100   Minus

BS15663.complete Sequence

287 bp assembled on 2006-11-29

GenBank Submission: FJ637942

> BS15663.complete
GAAGTTATCAGTCGACATGGAAGTTTTCCTAACAATCGTCTTCTTCACCA
TCTTCTGGGCGGCGGTGGCCAAGTACGGACCCATTCTGTTCACCAAGCAA
CCGCACGATGACCTGGTGCGCTGCATTTTCCTTCTGACCGCCGTCGTCTG
CTGGCTTTTCTGGCTGTGCTGCTATTTGGCGCAACTGAATCCACTGCTGG
GGCCGAAACTCAATGGAAACACCATTCGGATCATTGCCTCGTCCTGGGGA
AATCCCATCAAGGAGGGATAAAAGCTTTCTAGACCAT

BS15663.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
VhaM9.7-c-RA 255 CG11589-PA 1..255 17..271 1275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
VhaM9.7-c-RA 848 CG11589-RA 97..352 16..271 1280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4186514..4186769 271..16 1280 100 Minus
Blast to na_te.dros performed on 2014-11-27 02:02:19 has no hits.

BS15663.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:36 Download gff for BS15663.complete
Subject Subject Range Query Range Percent Splice Strand
VhaM9.7-1-RA 1..255 17..271 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:13:29 Download gff for BS15663.complete
Subject Subject Range Query Range Percent Splice Strand
VhaM9.7-1-RA 41..303 9..271 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:53 Download gff for BS15663.complete
Subject Subject Range Query Range Percent Splice Strand
VhaM9.7-c-RA 98..350 17..269 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:36 Download gff for BS15663.complete
Subject Subject Range Query Range Percent Splice Strand
VhaM9.7-1-RA 41..303 9..271 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:21 Download gff for BS15663.complete
Subject Subject Range Query Range Percent Splice Strand
VhaM9.7-c-RA 98..350 17..269 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:21 Download gff for BS15663.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4186516..4186768 17..269 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:53 Download gff for BS15663.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4186516..4186768 17..269 100   Minus

BS15663.pep Sequence

Translation from 16 to 270

> BS15663.pep
MEVFLTIVFFTIFWAAVAKYGPILFTKQPHDDLVRCIFLLTAVVCWLFWL
CCYLAQLNPLLGPKLNGNTIRIIASSWGNPIKEG*

BS15663.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:14
Subject Length Description Subject Range Query Range Score Percent Strand
VhaM9.7-c-PA 84 CG11589-PA 1..84 1..84 461 100 Plus
VhaM9.7-a-PC 85 CG1268-PC 5..85 4..84 264 53.1 Plus
VhaM9.7-a-PB 85 CG1268-PB 5..85 4..84 264 53.1 Plus
VhaM9.7-b-PB 89 CG7625-PB 9..83 8..83 214 48.7 Plus
VhaM9.7-b-PA 89 CG7625-PA 9..83 8..83 214 48.7 Plus