Clone Sequence Records
BS15663.3prime Sequence
306 bp (306 high quality bases) assembled on 2006-12-21
> BS15663.3prime
GTAAGGGGGCGCGCCAAANGAAGGGNCNAGAAAGCNTTTACCCTTCCGGG
ATGGGATTTCCCCAGGACGAGGCAATGATCCGAATGGTGTTTCCATTGAG
TTTCGGCCCCAGCAGTGTATTCAGTTGCGCCAAATAGCAGCACAGCCAGA
AAAGCCAGCAGACGACGGCGGTCAGAAGGAAAATGCAGCGCACCAGGTCA
TCGTGCGGTTGCTTGGTGAACAGAATGGGTCCGTACTTGGCCACCGCCGC
CCAGAAGATGGTGAAGAAGACGATTGTTAGGAAAACTTCCATGTCGACTG
ATAACT
BS15663.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11589-PA | 255 | VhaM9.7-1-RA | 1..243 | 292..50 | 1190 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:06:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaM9.7-c-RA | 848 | CG11589-RA | 97..340 | 293..50 | 1205 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:06:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4186526..4186769 | 50..293 | 1205 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:06:31 has no hits.
BS15663.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:24 Download gff for
BS15663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11589-PA | 1..255 | 38..292 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:12:09 Download gff for
BS15663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11589-PA | 1..255 | 38..292 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 16:40:48 Download gff for
BS15663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaM9.7-c-RA | 90..352 | 38..300 | 96 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:12 Download gff for
BS15663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaM9.7-c-RA | 90..352 | 38..300 | 96 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:12 Download gff for
BS15663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4186514..4186773 | 38..300 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 16:40:48 Download gff for
BS15663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4186514..4186773 | 38..300 | 96 | | Plus |
BS15663.5prime Sequence
285 bp (285 high quality bases) assembled on 2006-12-21
> BS15663.5prime
GAAGATATCCTTTAACATGGAAGTTTTCCTAACAATCGTCTTCTTCACCA
TCTTCTGGGCGGCGGTGGCCAAGTACGGACCCATTCTGTTCACCAAGCAA
CCGCACGATGACCTGGTGCGCTGCATTTTCCTTCTGACCGCCGTCGTCTG
CTGGCTTTTCTGGCTGTGCTGCTATTTGGCGCAACTGAATCCACTGCTGG
GGCCGAAACTCAATGGAAACACCATTCGGATCATTGCCTCGTCCTGGGGA
AATCCCATCAAGGAGGGATAAAAGCTTTCTAGACC
BS15663.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11589-PA | 255 | VhaM9.7-1-RA | 1..255 | 17..271 | 1275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 08:03:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaM9.7-c-RA | 848 | CG11589-RA | 97..352 | 16..271 | 1280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 08:03:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4186514..4186769 | 271..16 | 1280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 08:03:47 has no hits.
BS15663.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:25 Download gff for
BS15663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11589-PA | 1..255 | 17..271 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:12:11 Download gff for
BS15663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11589-PA | 1..255 | 17..271 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 13:17:20 Download gff for
BS15663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaM9.7-c-RA | 97..352 | 16..271 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:44:35 Download gff for
BS15663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaM9.7-c-RA | 97..352 | 16..271 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:44:35 Download gff for
BS15663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4186514..4186769 | 16..271 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 13:17:20 Download gff for
BS15663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4186514..4186769 | 16..271 | 100 | | Minus |
BS15663.complete Sequence
287 bp assembled on 2006-11-29
GenBank Submission: FJ637942
> BS15663.complete
GAAGTTATCAGTCGACATGGAAGTTTTCCTAACAATCGTCTTCTTCACCA
TCTTCTGGGCGGCGGTGGCCAAGTACGGACCCATTCTGTTCACCAAGCAA
CCGCACGATGACCTGGTGCGCTGCATTTTCCTTCTGACCGCCGTCGTCTG
CTGGCTTTTCTGGCTGTGCTGCTATTTGGCGCAACTGAATCCACTGCTGG
GGCCGAAACTCAATGGAAACACCATTCGGATCATTGCCTCGTCCTGGGGA
AATCCCATCAAGGAGGGATAAAAGCTTTCTAGACCAT
BS15663.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:02:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaM9.7-c-RA | 255 | CG11589-PA | 1..255 | 17..271 | 1275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:02:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaM9.7-c-RA | 848 | CG11589-RA | 97..352 | 16..271 | 1280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:02:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4186514..4186769 | 271..16 | 1280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 02:02:19 has no hits.
BS15663.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:36 Download gff for
BS15663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaM9.7-1-RA | 1..255 | 17..271 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:13:29 Download gff for
BS15663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaM9.7-1-RA | 41..303 | 9..271 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:53 Download gff for
BS15663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaM9.7-c-RA | 98..350 | 17..269 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:36 Download gff for
BS15663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaM9.7-1-RA | 41..303 | 9..271 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:21 Download gff for
BS15663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaM9.7-c-RA | 98..350 | 17..269 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:21 Download gff for
BS15663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4186516..4186768 | 17..269 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:53 Download gff for
BS15663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4186516..4186768 | 17..269 | 100 | | Minus |
BS15663.pep Sequence
Translation from 16 to 270
> BS15663.pep
MEVFLTIVFFTIFWAAVAKYGPILFTKQPHDDLVRCIFLLTAVVCWLFWL
CCYLAQLNPLLGPKLNGNTIRIIASSWGNPIKEG*
BS15663.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaM9.7-c-PA | 84 | CG11589-PA | 1..84 | 1..84 | 461 | 100 | Plus |
VhaM9.7-a-PC | 85 | CG1268-PC | 5..85 | 4..84 | 264 | 53.1 | Plus |
VhaM9.7-a-PB | 85 | CG1268-PB | 5..85 | 4..84 | 264 | 53.1 | Plus |
VhaM9.7-b-PB | 89 | CG7625-PB | 9..83 | 8..83 | 214 | 48.7 | Plus |
VhaM9.7-b-PA | 89 | CG7625-PA | 9..83 | 8..83 | 214 | 48.7 | Plus |