Clone BS15665 Report

Search the DGRC for BS15665

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:156
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG4362-RA
Protein status:BS15665.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15665.3prime Sequence

732 bp (732 high quality bases) assembled on 2006-12-21

> BS15665.3prime
ATGGTCTAGAAAGCTTTCACCCTACCTCAACCGGAGCCACTGGATCTCCG
CCACCGACCAATTCCTTGACCAGGTTGCGACCCCAGTAGATGCTCACATC
GGCGCAGTTCTTGAATGTTTCCTGTGGGCCACAGCCCAAGGCTCCGTTTC
CGGAATTATCGCAGATGCCCCAGTTGTTGGCACCCACATAGGTCCAGCGG
AGGACGCAGTGAGAGCAGGTAAGACCCTCCGGCAGGACGACTGTCACATC
GAATTCGCCCATCTGATCGCCGATATCCTTTCTATCGCTTCCATCGATGA
ATCGCAGGCGGTTCTGATCGAAGCACTCCTCCGACTCGGCACCGAAGGCG
TCCAGGTTGCACAGGTGGAACTCGAAGTAACCCAAGTGATTGGTGGTGAT
CTTCACGCCCACGGTGATGGTATTGCCAGCAACGTAGCTCCTGGTCACCA
CACCAGCTCCACCGATGCTTCCTCCGATCTCGTTGGCACGGGGCTGGGCA
TCCAGGAAGTTGTCGCCGCACAGACCACAGCGACCTCCATTGTTGGACTG
CGTGTACAAACCGCCGCAGAAGAGTTCGTTGTCGTTCCAGTTCTGGGGTG
CGGATCCATCGTAGCGCCAACGGGAGGATCGGCTCGGCGGGGACAGCATC
ATGCCGTGGGCGTCGATCTGCTGCAGCCCGATGGCCAGCAGCAAGGTCAT
GCTGAGCAGGTACTTCATGTCGACTGATAACT

BS15665.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4362-PA 702 CG4362-RA 1..695 718..24 3450 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 21:40:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4362-RA 829 CG4362-RA 30..725 719..24 3465 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 21:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20306544..20306916 181..553 1850 99.7 Plus
3R 32079331 3R 20307343..20307508 554..719 830 100 Plus
3R 32079331 3R 20306320..20306477 24..181 790 100 Plus
Blast to na_te.dros performed on 2015-02-05 21:40:41 has no hits.

BS15665.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:28 Download gff for BS15665.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4362-PA 1..702 17..718 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:12:15 Download gff for BS15665.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4362-PA 1..702 17..718 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 03:22:25 Download gff for BS15665.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4362-RA 26..733 15..726 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:24:01 Download gff for BS15665.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4362-RA 27..734 15..726 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 00:24:01 Download gff for BS15665.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20306311..20306476 15..180 98 <- Plus
3R 20306544..20306916 181..553 99 <- Plus
3R 20307343..20307511 554..726 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 03:22:25 Download gff for BS15665.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16132033..16132198 15..180 98 <- Plus
arm_3R 16132266..16132638 181..553 99 <- Plus
arm_3R 16133065..16133233 554..726 97   Plus

BS15665.5prime Sequence

732 bp (732 high quality bases) assembled on 2006-12-21

> BS15665.5prime
GAAGTTATCCTTCGACATGAAGTACCTGCTCAGCATGACCTTGCTGCTGG
CCATCGGGCTGCAGCAGATCGACGCCCACGGCATGATGCTGTCCCCGCCG
AGCCGATCCTCCCGTTGGCGCTACGATGGATCCGCACCCCAGAACTGGAA
CGACAACGAACTCTTCTGCGGCGGTTTGTACACGCAGTCCAACAATGGAG
GTCGCTGTGGTCTGTGCGGCGACAACTTCCTGGATGCCCAGCCCCGTGCC
AACGAGATCGGAGGAAGCATCGGTGGAGCTGGTGTGGTGACCAGGAGCTA
CGTTGCTGGCAATACCATCACCGTGGGCGTGAAGATCACCACCAATCACT
TGGGTTACTTCGAGTTCCACCTGTGCAACCTGGACGCCTTCGGTGCCGAG
TCGGAGGAGTGCTTCGATCAGAACCGCCTGCGATTCATCGATGGAAGCGA
TAGAAAGGATATCGGCGATCAGATGGGCGAATTCGATGTGACAGTCGTCC
TGCCGGAGGGTCTTACCTGCTCTCACTGCGTCCTCCGCTGGACCTATGTG
GGTGCCAACAACTGGGGCATCTGCGATAATTCCGGAAACGGAGCCTTGGG
CTGTGGCCCACAGGAAACATTCAAGAACTGCGCCGATGTGAGCATCTACT
GGGGTCGCAACCTGGTCAAGGAATTGGTCGGTGGCGGAGATCCAGTGGCT
CCGGTTGAGGTCGCCTGAAAGCTTTCTAGACC

BS15665.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4362-PA 702 CG4362-RA 1..702 17..718 3485 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG4362-RA 829 CG4362-RA 30..734 16..720 3510 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20306544..20306916 554..182 1850 99.7 Minus
3R 32079331 3R 20306311..20306477 720..554 835 100 Minus
3R 32079331 3R 20307343..20307508 181..16 830 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:06:13 has no hits.

BS15665.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:29 Download gff for BS15665.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4362-PA 1..702 17..718 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:12:17 Download gff for BS15665.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4362-PA 1..702 17..718 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 16:40:44 Download gff for BS15665.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4362-RA 29..733 16..720 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:09 Download gff for BS15665.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4362-RA 30..734 16..720 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:09 Download gff for BS15665.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20306311..20306476 555..720 100 <- Minus
3R 20306544..20306916 182..554 99 <- Minus
3R 20307343..20307508 16..181 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 16:40:44 Download gff for BS15665.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16132033..16132198 555..720 100 <- Minus
arm_3R 16132266..16132638 182..554 99 <- Minus
arm_3R 16133065..16133230 16..181 100   Minus

BS15665.complete Sequence

734 bp assembled on 2006-11-29

GenBank Submission: FJ637943

> BS15665.complete
GAAGTTATCAGTCGACATGAAGTACCTGCTCAGCATGACCTTGCTGCTGG
CCATCGGGCTGCAGCAGATCGACGCCCACGGCATGATGCTGTCCCCGCCG
AGCCGATCCTCCCGTTGGCGCTACGATGGATCCGCACCCCAGAACTGGAA
CGACAACGAACTCTTCTGCGGCGGTTTGTACACGCAGTCCAACAATGGAG
GTCGCTGTGGTCTGTGCGGCGACAACTTCCTGGATGCCCAGCCCCGTGCC
AACGAGATCGGAGGAAGCATCGGTGGAGCTGGTGTGGTGACCAGGAGCTA
CGTTGCTGGCAATACCATCACCGTGGGCGTGAAGATCACCACCAATCACT
TGGGTTACTTCGAGTTCCACCTGTGCAACCTGGACGCCTTCGGTGCCGAG
TCGGAGGAGTGCTTCGATCAGAACCGCCTGCGATTCATCGATGGAAGCGA
TAGAAAGGATATCGGCGATCAGATGGGCGAATTCGATGTGACAGTCGTCC
TGCCGGAGGGTCTTACCTGCTCTCACTGCGTCCTCCGCTGGACCTATGTG
GGTGCCAACAACTGGGGCATCTGCGATAATTCCGGAAACGGAGCCTTGGG
CTGTGGCCCACAGGAAACATTCAAGAACTGCGCCGATGTGAGCATCTACT
GGGGTCGCAACCTGGTCAAGGAATTGGTCGGTGGCGGAGATCCAGTGGCT
CCGGTTGAGGTCGCCTGAAAGCTTTCTAGACCAT

BS15665.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4362-RA 702 CG4362-PA 1..702 17..718 3495 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4362-RA 829 CG4362-RA 30..734 16..720 3510 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20306544..20306916 554..182 1850 99.7 Minus
3R 32079331 3R 20306311..20306477 720..554 835 100 Minus
3R 32079331 3R 20307343..20307508 181..16 830 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:50:48 has no hits.

BS15665.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:22 Download gff for BS15665.complete
Subject Subject Range Query Range Percent Splice Strand
CG4362-RA 1..702 17..718 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:28 Download gff for BS15665.complete
Subject Subject Range Query Range Percent Splice Strand
CG4362-RA 10..715 9..718 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:27 Download gff for BS15665.complete
Subject Subject Range Query Range Percent Splice Strand
CG4362-RA 30..730 17..717 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:23 Download gff for BS15665.complete
Subject Subject Range Query Range Percent Splice Strand
CG4362-RA 10..715 9..718 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:10 Download gff for BS15665.complete
Subject Subject Range Query Range Percent Splice Strand
CG4362-RA 31..731 17..717 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:10 Download gff for BS15665.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20306314..20306476 555..717 100 <- Minus
3R 20306544..20306916 182..554 99 <- Minus
3R 20307343..20307507 17..181 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:27 Download gff for BS15665.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16133065..16133229 17..181 100   Minus
arm_3R 16132036..16132198 555..717 100 <- Minus
arm_3R 16132266..16132638 182..554 99 <- Minus

BS15665.pep Sequence

Translation from 16 to 717

> BS15665.pep
MKYLLSMTLLLAIGLQQIDAHGMMLSPPSRSSRWRYDGSAPQNWNDNELF
CGGLYTQSNNGGRCGLCGDNFLDAQPRANEIGGSIGGAGVVTRSYVAGNT
ITVGVKITTNHLGYFEFHLCNLDAFGAESEECFDQNRLRFIDGSDRKDIG
DQMGEFDVTVVLPEGLTCSHCVLRWTYVGANNWGICDNSGNGALGCGPQE
TFKNCADVSIYWGRNLVKELVGGGDPVAPVEVA*

BS15665.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4362-PA 233 CG4362-PA 1..233 1..233 1275 100 Plus
CG4367-PB 219 CG4367-PB 9..216 17..233 635 53.2 Plus
CG4367-PA 219 CG4367-PA 9..216 17..233 635 53.2 Plus
CG42598-PB 340 CG42598-PB 10..224 1..210 440 38.7 Plus
CG41284-PC 340 CG41284-PC 10..224 1..210 432 38.3 Plus