Clone Sequence Records
BS15665.3prime Sequence
732 bp (732 high quality bases) assembled on 2006-12-21
> BS15665.3prime
ATGGTCTAGAAAGCTTTCACCCTACCTCAACCGGAGCCACTGGATCTCCG
CCACCGACCAATTCCTTGACCAGGTTGCGACCCCAGTAGATGCTCACATC
GGCGCAGTTCTTGAATGTTTCCTGTGGGCCACAGCCCAAGGCTCCGTTTC
CGGAATTATCGCAGATGCCCCAGTTGTTGGCACCCACATAGGTCCAGCGG
AGGACGCAGTGAGAGCAGGTAAGACCCTCCGGCAGGACGACTGTCACATC
GAATTCGCCCATCTGATCGCCGATATCCTTTCTATCGCTTCCATCGATGA
ATCGCAGGCGGTTCTGATCGAAGCACTCCTCCGACTCGGCACCGAAGGCG
TCCAGGTTGCACAGGTGGAACTCGAAGTAACCCAAGTGATTGGTGGTGAT
CTTCACGCCCACGGTGATGGTATTGCCAGCAACGTAGCTCCTGGTCACCA
CACCAGCTCCACCGATGCTTCCTCCGATCTCGTTGGCACGGGGCTGGGCA
TCCAGGAAGTTGTCGCCGCACAGACCACAGCGACCTCCATTGTTGGACTG
CGTGTACAAACCGCCGCAGAAGAGTTCGTTGTCGTTCCAGTTCTGGGGTG
CGGATCCATCGTAGCGCCAACGGGAGGATCGGCTCGGCGGGGACAGCATC
ATGCCGTGGGCGTCGATCTGCTGCAGCCCGATGGCCAGCAGCAAGGTCAT
GCTGAGCAGGTACTTCATGTCGACTGATAACT
BS15665.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4362-PA | 702 | CG4362-RA | 1..695 | 718..24 | 3450 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 21:40:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4362-RA | 829 | CG4362-RA | 30..725 | 719..24 | 3465 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 21:40:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20306544..20306916 | 181..553 | 1850 | 99.7 | Plus |
3R | 32079331 | 3R | 20307343..20307508 | 554..719 | 830 | 100 | Plus |
3R | 32079331 | 3R | 20306320..20306477 | 24..181 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 21:40:41 has no hits.
BS15665.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:28 Download gff for
BS15665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4362-PA | 1..702 | 17..718 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:12:15 Download gff for
BS15665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4362-PA | 1..702 | 17..718 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 03:22:25 Download gff for
BS15665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4362-RA | 26..733 | 15..726 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:24:01 Download gff for
BS15665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4362-RA | 27..734 | 15..726 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 00:24:01 Download gff for
BS15665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20306311..20306476 | 15..180 | 98 | <- | Plus |
3R | 20306544..20306916 | 181..553 | 99 | <- | Plus |
3R | 20307343..20307511 | 554..726 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 03:22:25 Download gff for
BS15665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16132033..16132198 | 15..180 | 98 | <- | Plus |
arm_3R | 16132266..16132638 | 181..553 | 99 | <- | Plus |
arm_3R | 16133065..16133233 | 554..726 | 97 | | Plus |
BS15665.5prime Sequence
732 bp (732 high quality bases) assembled on 2006-12-21
> BS15665.5prime
GAAGTTATCCTTCGACATGAAGTACCTGCTCAGCATGACCTTGCTGCTGG
CCATCGGGCTGCAGCAGATCGACGCCCACGGCATGATGCTGTCCCCGCCG
AGCCGATCCTCCCGTTGGCGCTACGATGGATCCGCACCCCAGAACTGGAA
CGACAACGAACTCTTCTGCGGCGGTTTGTACACGCAGTCCAACAATGGAG
GTCGCTGTGGTCTGTGCGGCGACAACTTCCTGGATGCCCAGCCCCGTGCC
AACGAGATCGGAGGAAGCATCGGTGGAGCTGGTGTGGTGACCAGGAGCTA
CGTTGCTGGCAATACCATCACCGTGGGCGTGAAGATCACCACCAATCACT
TGGGTTACTTCGAGTTCCACCTGTGCAACCTGGACGCCTTCGGTGCCGAG
TCGGAGGAGTGCTTCGATCAGAACCGCCTGCGATTCATCGATGGAAGCGA
TAGAAAGGATATCGGCGATCAGATGGGCGAATTCGATGTGACAGTCGTCC
TGCCGGAGGGTCTTACCTGCTCTCACTGCGTCCTCCGCTGGACCTATGTG
GGTGCCAACAACTGGGGCATCTGCGATAATTCCGGAAACGGAGCCTTGGG
CTGTGGCCCACAGGAAACATTCAAGAACTGCGCCGATGTGAGCATCTACT
GGGGTCGCAACCTGGTCAAGGAATTGGTCGGTGGCGGAGATCCAGTGGCT
CCGGTTGAGGTCGCCTGAAAGCTTTCTAGACC
BS15665.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4362-PA | 702 | CG4362-RA | 1..702 | 17..718 | 3485 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:06:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4362-RA | 829 | CG4362-RA | 30..734 | 16..720 | 3510 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:06:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20306544..20306916 | 554..182 | 1850 | 99.7 | Minus |
3R | 32079331 | 3R | 20306311..20306477 | 720..554 | 835 | 100 | Minus |
3R | 32079331 | 3R | 20307343..20307508 | 181..16 | 830 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:06:13 has no hits.
BS15665.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:29 Download gff for
BS15665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4362-PA | 1..702 | 17..718 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:12:17 Download gff for
BS15665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4362-PA | 1..702 | 17..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 16:40:44 Download gff for
BS15665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4362-RA | 29..733 | 16..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:09 Download gff for
BS15665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4362-RA | 30..734 | 16..720 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:09 Download gff for
BS15665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20306311..20306476 | 555..720 | 100 | <- | Minus |
3R | 20306544..20306916 | 182..554 | 99 | <- | Minus |
3R | 20307343..20307508 | 16..181 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 16:40:44 Download gff for
BS15665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16132033..16132198 | 555..720 | 100 | <- | Minus |
arm_3R | 16132266..16132638 | 182..554 | 99 | <- | Minus |
arm_3R | 16133065..16133230 | 16..181 | 100 | | Minus |
BS15665.complete Sequence
734 bp assembled on 2006-11-29
GenBank Submission: FJ637943
> BS15665.complete
GAAGTTATCAGTCGACATGAAGTACCTGCTCAGCATGACCTTGCTGCTGG
CCATCGGGCTGCAGCAGATCGACGCCCACGGCATGATGCTGTCCCCGCCG
AGCCGATCCTCCCGTTGGCGCTACGATGGATCCGCACCCCAGAACTGGAA
CGACAACGAACTCTTCTGCGGCGGTTTGTACACGCAGTCCAACAATGGAG
GTCGCTGTGGTCTGTGCGGCGACAACTTCCTGGATGCCCAGCCCCGTGCC
AACGAGATCGGAGGAAGCATCGGTGGAGCTGGTGTGGTGACCAGGAGCTA
CGTTGCTGGCAATACCATCACCGTGGGCGTGAAGATCACCACCAATCACT
TGGGTTACTTCGAGTTCCACCTGTGCAACCTGGACGCCTTCGGTGCCGAG
TCGGAGGAGTGCTTCGATCAGAACCGCCTGCGATTCATCGATGGAAGCGA
TAGAAAGGATATCGGCGATCAGATGGGCGAATTCGATGTGACAGTCGTCC
TGCCGGAGGGTCTTACCTGCTCTCACTGCGTCCTCCGCTGGACCTATGTG
GGTGCCAACAACTGGGGCATCTGCGATAATTCCGGAAACGGAGCCTTGGG
CTGTGGCCCACAGGAAACATTCAAGAACTGCGCCGATGTGAGCATCTACT
GGGGTCGCAACCTGGTCAAGGAATTGGTCGGTGGCGGAGATCCAGTGGCT
CCGGTTGAGGTCGCCTGAAAGCTTTCTAGACCAT
BS15665.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4362-RA | 702 | CG4362-PA | 1..702 | 17..718 | 3495 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4362-RA | 829 | CG4362-RA | 30..734 | 16..720 | 3510 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:50:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20306544..20306916 | 554..182 | 1850 | 99.7 | Minus |
3R | 32079331 | 3R | 20306311..20306477 | 720..554 | 835 | 100 | Minus |
3R | 32079331 | 3R | 20307343..20307508 | 181..16 | 830 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:50:48 has no hits.
BS15665.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:22 Download gff for
BS15665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4362-RA | 1..702 | 17..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:28 Download gff for
BS15665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4362-RA | 10..715 | 9..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:27 Download gff for
BS15665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4362-RA | 30..730 | 17..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:23 Download gff for
BS15665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4362-RA | 10..715 | 9..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:10 Download gff for
BS15665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4362-RA | 31..731 | 17..717 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:10 Download gff for
BS15665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20306314..20306476 | 555..717 | 100 | <- | Minus |
3R | 20306544..20306916 | 182..554 | 99 | <- | Minus |
3R | 20307343..20307507 | 17..181 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:27 Download gff for
BS15665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16133065..16133229 | 17..181 | 100 | | Minus |
arm_3R | 16132036..16132198 | 555..717 | 100 | <- | Minus |
arm_3R | 16132266..16132638 | 182..554 | 99 | <- | Minus |
BS15665.pep Sequence
Translation from 16 to 717
> BS15665.pep
MKYLLSMTLLLAIGLQQIDAHGMMLSPPSRSSRWRYDGSAPQNWNDNELF
CGGLYTQSNNGGRCGLCGDNFLDAQPRANEIGGSIGGAGVVTRSYVAGNT
ITVGVKITTNHLGYFEFHLCNLDAFGAESEECFDQNRLRFIDGSDRKDIG
DQMGEFDVTVVLPEGLTCSHCVLRWTYVGANNWGICDNSGNGALGCGPQE
TFKNCADVSIYWGRNLVKELVGGGDPVAPVEVA*
BS15665.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4362-PA | 233 | CG4362-PA | 1..233 | 1..233 | 1275 | 100 | Plus |
CG4367-PB | 219 | CG4367-PB | 9..216 | 17..233 | 635 | 53.2 | Plus |
CG4367-PA | 219 | CG4367-PA | 9..216 | 17..233 | 635 | 53.2 | Plus |
CG42598-PB | 340 | CG42598-PB | 10..224 | 1..210 | 440 | 38.7 | Plus |
CG41284-PC | 340 | CG41284-PC | 10..224 | 1..210 | 432 | 38.3 | Plus |