Clone Sequence Records
BS15670.complete Sequence
629 bp assembled on 2010-02-09
GenBank Submission: KX805987
> BS15670.complete
GAAGTTATCAGTCGACATGGCTGGCCGCTCCATCGTCCACTTTTTTCTGG
GGTCCGTGGCAATCGCCCTGGGATCGTACATCTACTTCACCATGCAAATC
GACATGTCTGCTAACGGAGATTACAAGAACGCCGCCTCGATCTACGAGTT
CACCGTGAAGGATACCCATGGCAACGATGTTTCCCTGGAAAAGTACAAGG
GCAAGGTGGTCCTGGTGGTGAACATCGCCTCCAAGTGCGGCCTGACCAAG
AACAACTACGAGAAGCTGACGGATCTAAAGGAGAAGTACGGCGAGCGCGG
CCTGGTGATCCTCAACTTCCCGTGCAATCAGTTTGGGTCCCAGATGCCGG
AGGCCGATGGAGAGGCCATGGTGTGCCACCTGCGCGACTCCAAGGCTGAC
ATCGGCGAGGTGTTCGCCAAGGTCGATGTGAATGGAGACAATGCGGCGCC
GCTGTACAAATACCTAAAGGCCAAGCAGACCGGCACCCTGGGCAGCGGAA
TCAAGTGGAACTTCACCAAGTTTCTGGTGAACAAGGAGGGCGTGCCCATC
AACCGATATGCCCCGACCACCGATCCCATGGACATCGCCAAGGACATTGA
AAAGCTGCTGTAGAAGCTTTCTAGACCAT
BS15670.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:45:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-RC | 597 | CG12013-PC | 1..597 | 17..613 | 2985 | 100 | Plus |
PHGPx-RD | 717 | CG12013-PD | 202..717 | 98..613 | 2580 | 100 | Plus |
PHGPx-RA | 510 | CG12013-PA | 1..510 | 104..613 | 2550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:45:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-RC | 1148 | CG12013-RC | 368..965 | 17..614 | 2990 | 100 | Plus |
PHGPx-RA | 803 | CG12013-RA | 102..620 | 96..614 | 2595 | 100 | Plus |
PHGPx-RD | 1014 | CG12013-RD | 315..831 | 98..614 | 2585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:45:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3327860..3328185 | 98..423 | 1630 | 100 | Plus |
3L | 28110227 | 3L | 3328249..3328443 | 420..614 | 975 | 100 | Plus |
3L | 28110227 | 3L | 3326632..3326712 | 17..97 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:45:28 has no hits.
BS15670.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:30 Download gff for
BS15670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 1..597 | 17..613 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:12 Download gff for
BS15670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 342..938 | 17..613 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:00 Download gff for
BS15670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 368..964 | 17..613 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:40 Download gff for
BS15670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 342..938 | 17..613 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:02 Download gff for
BS15670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 368..964 | 17..613 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:02 Download gff for
BS15670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3326632..3326712 | 17..97 | 100 | -> | Plus |
3L | 3327860..3328183 | 98..421 | 100 | -> | Plus |
3L | 3328251..3328442 | 422..613 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:00 Download gff for
BS15670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3326632..3326712 | 17..97 | 100 | -> | Plus |
arm_3L | 3327860..3328183 | 98..421 | 100 | -> | Plus |
arm_3L | 3328251..3328442 | 422..613 | 100 | | Plus |
BS15670.3prime Sequence
651 bp (651 high quality bases) assembled on 2006-12-21
> BS15670.3prime
TCCCTTTAAGGGCGCGCCAAACGAATGGTCTAGAAAGCTTCTACCTTTGC
TTTTCAATGTCCTTGGCGATGTCCATGGGATCGGTGGTCGGGGCATATCG
GTTGATGGGCACGCCCTCCTTGTTCACCAGAAACTTGGTGAAGTTCCACT
TGATTCCGCTGCCCAGGGTGCCGGTCTGCTTGGCCTTTAGGTATTTGTAC
AGCGGCGCCGCATTGTCTCCATTCACATCGACCTTGGCGAACACCTCGCC
GATGTCAGCCTTGGAGTCGCGCAGGTGGCACACCATGGCCTCTCCATCGG
CCTCCGGCATCTGGGACCCAAACTGATTGCACGGGAAGTTGAGGATCACC
AGGCCGCGCTCGCCGTACTTCTCCTTTAGATCCGTCAGCTTCTCGTAGTT
GTTCTTGGTCAGGCCGCACTTGGAGGCGATGTTCACCACCAGGACCACCT
TGCCCTTGTACTTTTCCAGGGAAACATCGTTGCCATGGGTATCCTTCACG
GTGAACTCGTAGATCGAGGCGGCGTTCTTGTAATCTCCGTTAGCAGACAT
GTCGATTTGCATGGTGAAGTAGATGTACGATCCCAGGGCGATTGCCACGG
ACCCCAGAAAAAAGTGGACGATGGAGCGGCCAGCCATGTCGACTGATAAC
T
BS15670.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12013-PC | 597 | PHGPx-RC | 1..589 | 637..49 | 2945 | 100 | Minus |
CG12013-PD | 717 | PHGPx-RD | 202..709 | 556..49 | 2540 | 100 | Minus |
CG12013-PB | 510 | PHGPx-RB | 1..502 | 550..49 | 2510 | 100 | Minus |
CG12013-PA | 510 | PHGPx-RA | 1..502 | 550..49 | 2510 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 12:34:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-RC | 1148 | CG12013-RC | 368..956 | 637..49 | 2945 | 100 | Minus |
PHGPx-RA | 803 | CG12013-RA | 102..611 | 558..49 | 2550 | 100 | Minus |
PHGPx-RD | 1014 | CG12013-RD | 315..822 | 556..49 | 2540 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 12:34:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3327860..3328185 | 556..231 | 1630 | 100 | Minus |
3L | 28110227 | 3L | 3328249..3328434 | 234..49 | 930 | 100 | Minus |
3L | 28110227 | 3L | 3326632..3326712 | 637..557 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 12:34:35 has no hits.
BS15670.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:38 Download gff for
BS15670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-PC | 1..597 | 41..637 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:12:28 Download gff for
BS15670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12013-PC | 1..597 | 41..637 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:39:02 Download gff for
BS15670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 362..965 | 40..646 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:03:10 Download gff for
BS15670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 362..965 | 40..646 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 14:03:10 Download gff for
BS15670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3326626..3326712 | 557..646 | 96 | -> | Minus |
3L | 3327860..3328183 | 233..556 | 100 | -> | Minus |
3L | 3328251..3328443 | 40..232 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:39:02 Download gff for
BS15670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3326626..3326712 | 557..646 | 96 | -> | Minus |
arm_3L | 3327860..3328183 | 233..556 | 100 | -> | Minus |
arm_3L | 3328251..3328443 | 40..232 | 97 | | Minus |
BS15670.5prime Sequence
627 bp (627 high quality bases) assembled on 2006-12-21
> BS15670.5prime
GAAGTTATCCCTTGACATGGCTGGCCGCTCCATCGTCCACTTTTTTCTGG
GGTCCGTGGCAATCGCCCTGGGATCGTACATCTACTTCACCATGCAAATC
GACATGTCTGCTAACGGAGATTACAAGAACGCCGCCTCGATCTACGAGTT
CACCGTGAAGGATACCCATGGCAACGATGTTTCCCTGGAAAAGTACAAGG
GCAAGGTGGTCCTGGTGGTGAACATCGCCTCCAAGTGCGGCCTGACCAAG
AACAACTACGAGAAGCTGACGGATCTAAAGGAGAAGTACGGCGAGCGCGG
CCTGGTGATCCTCAACTTCCCGTGCAATCAGTTTGGGTCCCAGATGCCGG
AGGCCGATGGAGAGGCCATGGTGTGCCACCTGCGCGACTCCAAGGCTGAC
ATCGGCGAGGTGTTCGCCAAGGTCGATGTGAATGGAGACAATGCGGCGCC
GCTGTACAAATACCTAAAGGCCAAGCAGACCGGCACCCTGGGCAGCGGAA
TCAAGTGGAACTTCACCAAGTTTCTGGTGAACAAGGAGGGCGTGCCCATC
AACCGATATGCCCCGACCACCGATCCCATGGACATCGCCAAGGACATTGA
AAAGCTGCTGTAGAAGCTTTCTAGACC
BS15670.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12013-PC | 597 | PHGPx-RC | 1..597 | 17..613 | 2985 | 100 | Plus |
CG12013-PD | 717 | PHGPx-RD | 202..717 | 98..613 | 2580 | 100 | Plus |
CG12013-PB | 510 | PHGPx-RB | 1..510 | 104..613 | 2550 | 100 | Plus |
CG12013-PA | 510 | PHGPx-RA | 1..510 | 104..613 | 2550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:51:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-RC | 1148 | CG12013-RC | 368..965 | 17..614 | 2990 | 100 | Plus |
PHGPx-RA | 803 | CG12013-RA | 102..620 | 96..614 | 2595 | 100 | Plus |
PHGPx-RD | 1014 | CG12013-RD | 315..831 | 98..614 | 2585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:51:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3327860..3328185 | 98..423 | 1630 | 100 | Plus |
3L | 28110227 | 3L | 3328249..3328443 | 420..614 | 975 | 100 | Plus |
3L | 28110227 | 3L | 3326632..3326712 | 17..97 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:51:39 has no hits.
BS15670.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:39 Download gff for
BS15670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-PC | 1..597 | 17..613 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:12:30 Download gff for
BS15670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12013-PC | 1..597 | 17..613 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 03:49:20 Download gff for
BS15670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 368..965 | 17..614 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:37 Download gff for
BS15670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 368..965 | 17..614 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:37 Download gff for
BS15670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3328251..3328443 | 422..614 | 100 | | Plus |
3L | 3327860..3328183 | 98..421 | 100 | -> | Plus |
3L | 3326632..3326712 | 17..97 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 03:49:20 Download gff for
BS15670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3326632..3326712 | 17..97 | 100 | -> | Plus |
arm_3L | 3327860..3328183 | 98..421 | 100 | -> | Plus |
arm_3L | 3328251..3328443 | 422..614 | 100 | | Plus |
BS15670.pep Sequence
Translation from 16 to 612
> BS15670.pep
MAGRSIVHFFLGSVAIALGSYIYFTMQIDMSANGDYKNAASIYEFTVKDT
HGNDVSLEKYKGKVVLVVNIASKCGLTKNNYEKLTDLKEKYGERGLVILN
FPCNQFGSQMPEADGEAMVCHLRDSKADIGEVFAKVDVNGDNAAPLYKYL
KAKQTGTLGSGIKWNFTKFLVNKEGVPINRYAPTTDPMDIAKDIEKLL*
BS15670.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:59:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-PC | 198 | CG12013-PC | 1..198 | 1..198 | 1032 | 100 | Plus |
PHGPx-PD | 238 | CG12013-PD | 68..238 | 28..198 | 897 | 100 | Plus |
PHGPx-PA | 169 | CG12013-PA | 1..169 | 30..198 | 887 | 100 | Plus |
CG15116-PA | 193 | CG15116-PA | 33..191 | 35..198 | 403 | 50.6 | Plus |