Clone BS15670 Report

Search the DGRC for BS15670

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:156
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptPHGPx-RC
Protein status:BS15670.pep: full length peptide match
Sequenced Size:629

Clone Sequence Records

BS15670.complete Sequence

629 bp assembled on 2010-02-09

GenBank Submission: KX805987

> BS15670.complete
GAAGTTATCAGTCGACATGGCTGGCCGCTCCATCGTCCACTTTTTTCTGG
GGTCCGTGGCAATCGCCCTGGGATCGTACATCTACTTCACCATGCAAATC
GACATGTCTGCTAACGGAGATTACAAGAACGCCGCCTCGATCTACGAGTT
CACCGTGAAGGATACCCATGGCAACGATGTTTCCCTGGAAAAGTACAAGG
GCAAGGTGGTCCTGGTGGTGAACATCGCCTCCAAGTGCGGCCTGACCAAG
AACAACTACGAGAAGCTGACGGATCTAAAGGAGAAGTACGGCGAGCGCGG
CCTGGTGATCCTCAACTTCCCGTGCAATCAGTTTGGGTCCCAGATGCCGG
AGGCCGATGGAGAGGCCATGGTGTGCCACCTGCGCGACTCCAAGGCTGAC
ATCGGCGAGGTGTTCGCCAAGGTCGATGTGAATGGAGACAATGCGGCGCC
GCTGTACAAATACCTAAAGGCCAAGCAGACCGGCACCCTGGGCAGCGGAA
TCAAGTGGAACTTCACCAAGTTTCTGGTGAACAAGGAGGGCGTGCCCATC
AACCGATATGCCCCGACCACCGATCCCATGGACATCGCCAAGGACATTGA
AAAGCTGCTGTAGAAGCTTTCTAGACCAT

BS15670.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-RC 597 CG12013-PC 1..597 17..613 2985 100 Plus
PHGPx-RD 717 CG12013-PD 202..717 98..613 2580 100 Plus
PHGPx-RA 510 CG12013-PA 1..510 104..613 2550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-RC 1148 CG12013-RC 368..965 17..614 2990 100 Plus
PHGPx-RA 803 CG12013-RA 102..620 96..614 2595 100 Plus
PHGPx-RD 1014 CG12013-RD 315..831 98..614 2585 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3327860..3328185 98..423 1630 100 Plus
3L 28110227 3L 3328249..3328443 420..614 975 100 Plus
3L 28110227 3L 3326632..3326712 17..97 405 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:45:28 has no hits.

BS15670.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:30 Download gff for BS15670.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 1..597 17..613 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:12 Download gff for BS15670.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 342..938 17..613 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:00 Download gff for BS15670.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 368..964 17..613 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:40 Download gff for BS15670.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 342..938 17..613 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:02 Download gff for BS15670.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 368..964 17..613 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:02 Download gff for BS15670.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3326632..3326712 17..97 100 -> Plus
3L 3327860..3328183 98..421 100 -> Plus
3L 3328251..3328442 422..613 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:00 Download gff for BS15670.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3326632..3326712 17..97 100 -> Plus
arm_3L 3327860..3328183 98..421 100 -> Plus
arm_3L 3328251..3328442 422..613 100   Plus

BS15670.3prime Sequence

651 bp (651 high quality bases) assembled on 2006-12-21

> BS15670.3prime
TCCCTTTAAGGGCGCGCCAAACGAATGGTCTAGAAAGCTTCTACCTTTGC
TTTTCAATGTCCTTGGCGATGTCCATGGGATCGGTGGTCGGGGCATATCG
GTTGATGGGCACGCCCTCCTTGTTCACCAGAAACTTGGTGAAGTTCCACT
TGATTCCGCTGCCCAGGGTGCCGGTCTGCTTGGCCTTTAGGTATTTGTAC
AGCGGCGCCGCATTGTCTCCATTCACATCGACCTTGGCGAACACCTCGCC
GATGTCAGCCTTGGAGTCGCGCAGGTGGCACACCATGGCCTCTCCATCGG
CCTCCGGCATCTGGGACCCAAACTGATTGCACGGGAAGTTGAGGATCACC
AGGCCGCGCTCGCCGTACTTCTCCTTTAGATCCGTCAGCTTCTCGTAGTT
GTTCTTGGTCAGGCCGCACTTGGAGGCGATGTTCACCACCAGGACCACCT
TGCCCTTGTACTTTTCCAGGGAAACATCGTTGCCATGGGTATCCTTCACG
GTGAACTCGTAGATCGAGGCGGCGTTCTTGTAATCTCCGTTAGCAGACAT
GTCGATTTGCATGGTGAAGTAGATGTACGATCCCAGGGCGATTGCCACGG
ACCCCAGAAAAAAGTGGACGATGGAGCGGCCAGCCATGTCGACTGATAAC
T

BS15670.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG12013-PC 597 PHGPx-RC 1..589 637..49 2945 100 Minus
CG12013-PD 717 PHGPx-RD 202..709 556..49 2540 100 Minus
CG12013-PB 510 PHGPx-RB 1..502 550..49 2510 100 Minus
CG12013-PA 510 PHGPx-RA 1..502 550..49 2510 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 12:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-RC 1148 CG12013-RC 368..956 637..49 2945 100 Minus
PHGPx-RA 803 CG12013-RA 102..611 558..49 2550 100 Minus
PHGPx-RD 1014 CG12013-RD 315..822 556..49 2540 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 12:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3327860..3328185 556..231 1630 100 Minus
3L 28110227 3L 3328249..3328434 234..49 930 100 Minus
3L 28110227 3L 3326632..3326712 637..557 405 100 Minus
Blast to na_te.dros performed on 2015-01-30 12:34:35 has no hits.

BS15670.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:38 Download gff for BS15670.3prime
Subject Subject Range Query Range Percent Splice Strand
PHGPx-PC 1..597 41..637 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:12:28 Download gff for BS15670.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12013-PC 1..597 41..637 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:39:02 Download gff for BS15670.3prime
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 362..965 40..646 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:03:10 Download gff for BS15670.3prime
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 362..965 40..646 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 14:03:10 Download gff for BS15670.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3326626..3326712 557..646 96 -> Minus
3L 3327860..3328183 233..556 100 -> Minus
3L 3328251..3328443 40..232 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:39:02 Download gff for BS15670.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3326626..3326712 557..646 96 -> Minus
arm_3L 3327860..3328183 233..556 100 -> Minus
arm_3L 3328251..3328443 40..232 97   Minus

BS15670.5prime Sequence

627 bp (627 high quality bases) assembled on 2006-12-21

> BS15670.5prime
GAAGTTATCCCTTGACATGGCTGGCCGCTCCATCGTCCACTTTTTTCTGG
GGTCCGTGGCAATCGCCCTGGGATCGTACATCTACTTCACCATGCAAATC
GACATGTCTGCTAACGGAGATTACAAGAACGCCGCCTCGATCTACGAGTT
CACCGTGAAGGATACCCATGGCAACGATGTTTCCCTGGAAAAGTACAAGG
GCAAGGTGGTCCTGGTGGTGAACATCGCCTCCAAGTGCGGCCTGACCAAG
AACAACTACGAGAAGCTGACGGATCTAAAGGAGAAGTACGGCGAGCGCGG
CCTGGTGATCCTCAACTTCCCGTGCAATCAGTTTGGGTCCCAGATGCCGG
AGGCCGATGGAGAGGCCATGGTGTGCCACCTGCGCGACTCCAAGGCTGAC
ATCGGCGAGGTGTTCGCCAAGGTCGATGTGAATGGAGACAATGCGGCGCC
GCTGTACAAATACCTAAAGGCCAAGCAGACCGGCACCCTGGGCAGCGGAA
TCAAGTGGAACTTCACCAAGTTTCTGGTGAACAAGGAGGGCGTGCCCATC
AACCGATATGCCCCGACCACCGATCCCATGGACATCGCCAAGGACATTGA
AAAGCTGCTGTAGAAGCTTTCTAGACC

BS15670.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG12013-PC 597 PHGPx-RC 1..597 17..613 2985 100 Plus
CG12013-PD 717 PHGPx-RD 202..717 98..613 2580 100 Plus
CG12013-PB 510 PHGPx-RB 1..510 104..613 2550 100 Plus
CG12013-PA 510 PHGPx-RA 1..510 104..613 2550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-RC 1148 CG12013-RC 368..965 17..614 2990 100 Plus
PHGPx-RA 803 CG12013-RA 102..620 96..614 2595 100 Plus
PHGPx-RD 1014 CG12013-RD 315..831 98..614 2585 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3327860..3328185 98..423 1630 100 Plus
3L 28110227 3L 3328249..3328443 420..614 975 100 Plus
3L 28110227 3L 3326632..3326712 17..97 405 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:51:39 has no hits.

BS15670.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:39 Download gff for BS15670.5prime
Subject Subject Range Query Range Percent Splice Strand
PHGPx-PC 1..597 17..613 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:12:30 Download gff for BS15670.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12013-PC 1..597 17..613 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 03:49:20 Download gff for BS15670.5prime
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 368..965 17..614 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:37 Download gff for BS15670.5prime
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 368..965 17..614 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:37 Download gff for BS15670.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3328251..3328443 422..614 100   Plus
3L 3327860..3328183 98..421 100 -> Plus
3L 3326632..3326712 17..97 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 03:49:20 Download gff for BS15670.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3326632..3326712 17..97 100 -> Plus
arm_3L 3327860..3328183 98..421 100 -> Plus
arm_3L 3328251..3328443 422..614 100   Plus

BS15670.pep Sequence

Translation from 16 to 612

> BS15670.pep
MAGRSIVHFFLGSVAIALGSYIYFTMQIDMSANGDYKNAASIYEFTVKDT
HGNDVSLEKYKGKVVLVVNIASKCGLTKNNYEKLTDLKEKYGERGLVILN
FPCNQFGSQMPEADGEAMVCHLRDSKADIGEVFAKVDVNGDNAAPLYKYL
KAKQTGTLGSGIKWNFTKFLVNKEGVPINRYAPTTDPMDIAKDIEKLL*

BS15670.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-PC 198 CG12013-PC 1..198 1..198 1032 100 Plus
PHGPx-PD 238 CG12013-PD 68..238 28..198 897 100 Plus
PHGPx-PA 169 CG12013-PA 1..169 30..198 887 100 Plus
CG15116-PA 193 CG15116-PA 33..191 35..198 403 50.6 Plus