Clone Sequence Records
BS15672.complete Sequence
689 bp assembled on 2010-02-09
GenBank Submission: KX801910
> BS15672.complete
GAAGTTATCAGTCGACATGCAGAAGACAAGCATCCTTATCTTGGCACTTT
TCGCCATCGCAGAGGCAGTTCCCACAACAGGACCCATTCGGGTCCGTCGC
CAGGTGCTTGGAGGTTCCTTAGCCTCCAATCCCGCTGGAGGGGCTGATGC
TCGGTTGAATCTCAGCAAGGGCATTGGCAATCCCAACCATAATGTGGTAG
GTCAGGTTTTCGCCGCCGGAAACACTCAAAGCGGTCCAGTCACAACTGGC
GGAACTTTGGCCTACAACAATGCTGGTCATGGTGCCTCTTTGACCAAAAC
ACACACGCCCGGAGTGAAGGATGTCTTCCAGCAGGAGGCCCATGCCAATT
TATTCAACAATGGCAGACACAATCTGGATGCCAAGGTCTTTGCTTCACAA
AATAAACTGGCCAATGGCTTCGAGTTCCAGCGCAATGGAGCTGGTCTGGA
TTACTCCCACATCAACGGACATGGTGGATCCTTGACGCACAGCAACTTCC
CAGGAATCGGCCAGCAACTCGGCCTGGACGGACGTGCTAATCTCTGGTCA
TCGCCCAATCGTGCTACTACCTTGGACCTCACGGGATCGGCGAGCAAGTG
GACGAGTGGTCCGTTTGCCAACCAGAAGCCAAACTTTGGTGCTGGCCTGG
GACTTTCCCACCACTTCGGTTAAAAGCTTTCTAGACCAT
BS15672.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:22:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AttB-RB | 657 | CG18372-PB | 1..657 | 17..673 | 3285 | 100 | Plus |
AttB-RA | 657 | CG18372-PA | 1..657 | 17..673 | 3285 | 100 | Plus |
AttA-RA | 666 | CG10146-PA | 35..666 | 42..673 | 2710 | 95.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:22:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AttB-RB | 879 | CG18372-RB | 31..690 | 15..674 | 3300 | 100 | Plus |
AttB-RA | 788 | CG18372-RA | 31..690 | 15..674 | 3300 | 100 | Plus |
AttA-RA | 790 | CG10146-RA | 64..695 | 42..673 | 2710 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:22:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14749573..14749976 | 271..674 | 2020 | 100 | Plus |
2R | 25286936 | 2R | 14747718..14748120 | 271..673 | 1790 | 96.3 | Plus |
2R | 25286936 | 2R | 14749253..14749508 | 15..270 | 1280 | 100 | Plus |
2R | 25286936 | 2R | 14747425..14747653 | 42..270 | 920 | 93.4 | Plus |
2R | 25286936 | 2R | 13394170..13394369 | 291..490 | 355 | 78.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:22:09 has no hits.
BS15672.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:32 Download gff for
BS15672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttB-RA | 1..657 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:27 Download gff for
BS15672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttB-RA | 33..687 | 17..671 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:43 Download gff for
BS15672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttB-RA | 33..687 | 17..671 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:55 Download gff for
BS15672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttB-RA | 33..687 | 17..671 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:50 Download gff for
BS15672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttB-RA | 33..687 | 17..671 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:50 Download gff for
BS15672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14749255..14749508 | 17..270 | 100 | -> | Plus |
2R | 14749573..14749973 | 271..671 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:43 Download gff for
BS15672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10636760..10637013 | 17..270 | 100 | -> | Plus |
arm_2R | 10637078..10637478 | 271..671 | 100 | | Plus |
BS15672.3prime Sequence
712 bp (712 high quality bases) assembled on 2006-12-21
> BS15672.3prime
TCCCATAAGAGGGCGCGCCAAACGAATGGTCTAGAAAGCTTTTACCTTAA
GGGGTGGGAAAGTCCCAGGCCAGCACCAAAGTTTGGCTTCTGGTTGGCAA
ACGGACCACTCGTCCACTTGCTCGCCGATCCCGTGAGGTCCAAGGTAGTA
GCACGATTGGGCGATGACCAGAGATTAGCACGTCCGTCCAGGCCGAGTTG
CTGGCCGATTCCTGGGAAGTTGCTGTGCGTCAAGGATCCACCATGTCCGT
TGATGTGGGAGTAATCCAGACCAGCTCCATTGCGCTGGAACTCGAAGCCA
TTGGCCAGTTTATTTTGTGAAGCAAAGACCTTGGCATCCAGATTGTGTCT
GCCATTGTTGAATAAATTGGCATGGGCCTCCTGCTGGAAGACATCCTTCA
CTCCGGGCGTGTGTGTTTTGGTCAAAGAGGCACCATGACCAGCATTGTTG
TAGGCCAAAGTTCCGCCAGTTGTGACTGGACCGCTTTGAGTGTTTCCGGC
GGCGAAAACCTGACCTACCACATTATGGTTGGGATTGCCAATGCCCTTGC
TGAGATTCAACCGAGCATCAGCCCCTCCAGCGGGATTGGAGGCTAAGGAA
CCTCCAAGCACCTGGCGACGGACCCGAATGGGTCCTGTTGTGGGAACTGC
CTCTGCGATGGCGAAAAGTGCCAAGATAAGGATGCTTGTCTTCTGCATGT
CGACTGATAACT
BS15672.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18372-PA | 657 | AttB-RA | 1..646 | 698..53 | 3230 | 100 | Minus |
CG10146-PA | 666 | AttA-RA | 55..644 | 653..64 | 2425 | 96.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:14:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AttB-RB | 879 | CG18372-RB | 31..682 | 700..49 | 3245 | 99.8 | Minus |
AttB-RA | 788 | CG18372-RA | 31..682 | 700..49 | 3245 | 99.8 | Minus |
AttA-RA | 790 | CG10146-RA | 64..673 | 673..64 | 2690 | 96.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:14:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14749573..14749968 | 444..49 | 1965 | 99.7 | Minus |
2R | 25286936 | 2R | 14747718..14748098 | 444..64 | 1770 | 97.6 | Minus |
2R | 25286936 | 2R | 14749253..14749508 | 700..445 | 1280 | 100 | Minus |
2R | 25286936 | 2R | 14747425..14747653 | 673..445 | 920 | 93.4 | Minus |
2R | 25286936 | 2R | 13394170..13394369 | 424..225 | 355 | 78.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:14:49 has no hits.
BS15672.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:43 Download gff for
BS15672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttB-PA | 1..657 | 41..698 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:12:34 Download gff for
BS15672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18372-PA | 1..657 | 41..698 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 13:00:38 Download gff for
BS15672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttB-RA | 22..690 | 40..712 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:28:39 Download gff for
BS15672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttB-RA | 22..690 | 40..712 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:28:39 Download gff for
BS15672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14749244..14749508 | 445..712 | 98 | -> | Minus |
2R | 14749573..14749976 | 40..444 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 13:00:38 Download gff for
BS15672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10636749..10637013 | 445..712 | 98 | -> | Minus |
arm_2R | 10637078..10637481 | 40..444 | 99 | | Minus |
BS15672.5prime Sequence
687 bp (687 high quality bases) assembled on 2006-12-21
> BS15672.5prime
GAAGTTATCCTTCGACATGCAGAAGACAAGCATCCTTATCTTGGCACTTT
TCGCCATCGCAGAGGCAGTTCCCACAACAGGACCCATTCGGGTCCGTCGC
CAGGTGCTTGGAGGTTCCTTAGCCTCCAATCCCGCTGGAGGGGCTGATGC
TCGGTTGAATCTCAGCAAGGGCATTGGCAATCCCAACCATAATGTGGTAG
GTCAGGTTTTCGCCGCCGGAAACACTCAAAGCGGTCCAGTCACAACTGGC
GGAACTTTGGCCTACAACAATGCTGGTCATGGTGCCTCTTTGACCAAAAC
ACACACGCCCGGAGTGAAGGATGTCTTCCAGCAGGAGGCCCATGCCAATT
TATTCAACAATGGCAGACACAATCTGGATGCCAAGGTCTTTGCTTCACAA
AATAAACTGGCCAATGGCTTCGAGTTCCAGCGCAATGGAGCTGGTCTGGA
TTACTCCCACATCAACGGACATGGTGGATCCTTGACGCACAGCAACTTCC
CAGGAATCGGCCAGCAACTCGGCCTGGACGGACGTGCTAATCTCTGGTCA
TCGCCCAATCGTGCTACTACCTTGGACCTCACGGGATCGGCGAGCAAGTG
GACGAGTGGTCCGTTTGCCAACCAGAAGCCAAACTTTGGTGCTGGCCTGG
GACTTTCCCACCACTTCGGTTAAAAGCTTTCTAGACC
BS15672.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18372-PA | 657 | AttB-RA | 1..657 | 17..673 | 3285 | 100 | Plus |
CG10146-PA | 666 | AttA-RA | 55..644 | 62..651 | 2425 | 96.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:56:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AttB-RB | 879 | CG18372-RB | 31..690 | 15..674 | 3300 | 100 | Plus |
AttB-RA | 788 | CG18372-RA | 31..690 | 15..674 | 3300 | 100 | Plus |
AttA-RA | 790 | CG10146-RA | 64..695 | 42..673 | 2710 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:56:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14749573..14749976 | 271..674 | 2020 | 100 | Plus |
2R | 25286936 | 2R | 14747718..14748120 | 271..673 | 1790 | 96.3 | Plus |
2R | 25286936 | 2R | 14749253..14749508 | 15..270 | 1280 | 100 | Plus |
2R | 25286936 | 2R | 14747425..14747653 | 42..270 | 920 | 93.4 | Plus |
2R | 25286936 | 2R | 13394170..13394369 | 291..490 | 355 | 78.5 | Plus |
Blast to na_te.dros performed on 2015-01-30 16:56:53 has no hits.
BS15672.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:44 Download gff for
BS15672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttB-PA | 1..657 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:12:35 Download gff for
BS15672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18372-PA | 1..657 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 15:55:11 Download gff for
BS15672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttB-RA | 24..694 | 8..679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:11:55 Download gff for
BS15672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttB-RA | 24..694 | 8..679 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:11:55 Download gff for
BS15672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14749246..14749508 | 8..270 | 98 | -> | Plus |
2R | 14749573..14749980 | 271..679 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 15:55:11 Download gff for
BS15672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10636751..10637013 | 8..270 | 98 | -> | Plus |
arm_2R | 10637078..10637485 | 271..679 | 99 | | Plus |
BS15672.pep Sequence
Translation from 16 to 672
> BS15672.pep
MQKTSILILALFAIAEAVPTTGPIRVRRQVLGGSLASNPAGGADARLNLS
KGIGNPNHNVVGQVFAAGNTQSGPVTTGGTLAYNNAGHGASLTKTHTPGV
KDVFQQEAHANLFNNGRHNLDAKVFASQNKLANGFEFQRNGAGLDYSHIN
GHGGSLTHSNFPGIGQQLGLDGRANLWSSPNRATTLDLTGSASKWTSGPF
ANQKPNFGAGLGLSHHFG*
BS15672.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:59:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AttB-PB | 218 | CG18372-PB | 1..218 | 1..218 | 1148 | 100 | Plus |
AttB-PA | 218 | CG18372-PA | 1..218 | 1..218 | 1148 | 100 | Plus |
AttA-PA | 221 | CG10146-PA | 1..221 | 1..218 | 1101 | 95 | Plus |
AttC-PB | 241 | CG4740-PB | 37..241 | 19..218 | 739 | 69.9 | Plus |
AttD-PA | 181 | CG7629-PA | 6..181 | 36..217 | 194 | 32.8 | Plus |