Clone BS15672 Report

Search the DGRC for BS15672

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:156
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptAttB-RA
Protein status:BS15672.pep: full length peptide match
Sequenced Size:689

Clone Sequence Records

BS15672.complete Sequence

689 bp assembled on 2010-02-09

GenBank Submission: KX801910

> BS15672.complete
GAAGTTATCAGTCGACATGCAGAAGACAAGCATCCTTATCTTGGCACTTT
TCGCCATCGCAGAGGCAGTTCCCACAACAGGACCCATTCGGGTCCGTCGC
CAGGTGCTTGGAGGTTCCTTAGCCTCCAATCCCGCTGGAGGGGCTGATGC
TCGGTTGAATCTCAGCAAGGGCATTGGCAATCCCAACCATAATGTGGTAG
GTCAGGTTTTCGCCGCCGGAAACACTCAAAGCGGTCCAGTCACAACTGGC
GGAACTTTGGCCTACAACAATGCTGGTCATGGTGCCTCTTTGACCAAAAC
ACACACGCCCGGAGTGAAGGATGTCTTCCAGCAGGAGGCCCATGCCAATT
TATTCAACAATGGCAGACACAATCTGGATGCCAAGGTCTTTGCTTCACAA
AATAAACTGGCCAATGGCTTCGAGTTCCAGCGCAATGGAGCTGGTCTGGA
TTACTCCCACATCAACGGACATGGTGGATCCTTGACGCACAGCAACTTCC
CAGGAATCGGCCAGCAACTCGGCCTGGACGGACGTGCTAATCTCTGGTCA
TCGCCCAATCGTGCTACTACCTTGGACCTCACGGGATCGGCGAGCAAGTG
GACGAGTGGTCCGTTTGCCAACCAGAAGCCAAACTTTGGTGCTGGCCTGG
GACTTTCCCACCACTTCGGTTAAAAGCTTTCTAGACCAT

BS15672.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
AttB-RB 657 CG18372-PB 1..657 17..673 3285 100 Plus
AttB-RA 657 CG18372-PA 1..657 17..673 3285 100 Plus
AttA-RA 666 CG10146-PA 35..666 42..673 2710 95.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
AttB-RB 879 CG18372-RB 31..690 15..674 3300 100 Plus
AttB-RA 788 CG18372-RA 31..690 15..674 3300 100 Plus
AttA-RA 790 CG10146-RA 64..695 42..673 2710 95.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14749573..14749976 271..674 2020 100 Plus
2R 25286936 2R 14747718..14748120 271..673 1790 96.3 Plus
2R 25286936 2R 14749253..14749508 15..270 1280 100 Plus
2R 25286936 2R 14747425..14747653 42..270 920 93.4 Plus
2R 25286936 2R 13394170..13394369 291..490 355 78.5 Plus
Blast to na_te.dros performed on 2014-11-28 04:22:09 has no hits.

BS15672.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:32 Download gff for BS15672.complete
Subject Subject Range Query Range Percent Splice Strand
AttB-RA 1..657 17..673 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:27 Download gff for BS15672.complete
Subject Subject Range Query Range Percent Splice Strand
AttB-RA 33..687 17..671 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:43 Download gff for BS15672.complete
Subject Subject Range Query Range Percent Splice Strand
AttB-RA 33..687 17..671 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:55 Download gff for BS15672.complete
Subject Subject Range Query Range Percent Splice Strand
AttB-RA 33..687 17..671 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:50 Download gff for BS15672.complete
Subject Subject Range Query Range Percent Splice Strand
AttB-RA 33..687 17..671 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:50 Download gff for BS15672.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14749255..14749508 17..270 100 -> Plus
2R 14749573..14749973 271..671 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:43 Download gff for BS15672.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10636760..10637013 17..270 100 -> Plus
arm_2R 10637078..10637478 271..671 100   Plus

BS15672.3prime Sequence

712 bp (712 high quality bases) assembled on 2006-12-21

> BS15672.3prime
TCCCATAAGAGGGCGCGCCAAACGAATGGTCTAGAAAGCTTTTACCTTAA
GGGGTGGGAAAGTCCCAGGCCAGCACCAAAGTTTGGCTTCTGGTTGGCAA
ACGGACCACTCGTCCACTTGCTCGCCGATCCCGTGAGGTCCAAGGTAGTA
GCACGATTGGGCGATGACCAGAGATTAGCACGTCCGTCCAGGCCGAGTTG
CTGGCCGATTCCTGGGAAGTTGCTGTGCGTCAAGGATCCACCATGTCCGT
TGATGTGGGAGTAATCCAGACCAGCTCCATTGCGCTGGAACTCGAAGCCA
TTGGCCAGTTTATTTTGTGAAGCAAAGACCTTGGCATCCAGATTGTGTCT
GCCATTGTTGAATAAATTGGCATGGGCCTCCTGCTGGAAGACATCCTTCA
CTCCGGGCGTGTGTGTTTTGGTCAAAGAGGCACCATGACCAGCATTGTTG
TAGGCCAAAGTTCCGCCAGTTGTGACTGGACCGCTTTGAGTGTTTCCGGC
GGCGAAAACCTGACCTACCACATTATGGTTGGGATTGCCAATGCCCTTGC
TGAGATTCAACCGAGCATCAGCCCCTCCAGCGGGATTGGAGGCTAAGGAA
CCTCCAAGCACCTGGCGACGGACCCGAATGGGTCCTGTTGTGGGAACTGC
CTCTGCGATGGCGAAAAGTGCCAAGATAAGGATGCTTGTCTTCTGCATGT
CGACTGATAACT

BS15672.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG18372-PA 657 AttB-RA 1..646 698..53 3230 100 Minus
CG10146-PA 666 AttA-RA 55..644 653..64 2425 96.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
AttB-RB 879 CG18372-RB 31..682 700..49 3245 99.8 Minus
AttB-RA 788 CG18372-RA 31..682 700..49 3245 99.8 Minus
AttA-RA 790 CG10146-RA 64..673 673..64 2690 96.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14749573..14749968 444..49 1965 99.7 Minus
2R 25286936 2R 14747718..14748098 444..64 1770 97.6 Minus
2R 25286936 2R 14749253..14749508 700..445 1280 100 Minus
2R 25286936 2R 14747425..14747653 673..445 920 93.4 Minus
2R 25286936 2R 13394170..13394369 424..225 355 78.5 Minus
Blast to na_te.dros performed on 2015-02-10 18:14:49 has no hits.

BS15672.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:43 Download gff for BS15672.3prime
Subject Subject Range Query Range Percent Splice Strand
AttB-PA 1..657 41..698 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:12:34 Download gff for BS15672.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18372-PA 1..657 41..698 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 13:00:38 Download gff for BS15672.3prime
Subject Subject Range Query Range Percent Splice Strand
AttB-RA 22..690 40..712 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:28:39 Download gff for BS15672.3prime
Subject Subject Range Query Range Percent Splice Strand
AttB-RA 22..690 40..712 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:28:39 Download gff for BS15672.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14749244..14749508 445..712 98 -> Minus
2R 14749573..14749976 40..444 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 13:00:38 Download gff for BS15672.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10636749..10637013 445..712 98 -> Minus
arm_2R 10637078..10637481 40..444 99   Minus

BS15672.5prime Sequence

687 bp (687 high quality bases) assembled on 2006-12-21

> BS15672.5prime
GAAGTTATCCTTCGACATGCAGAAGACAAGCATCCTTATCTTGGCACTTT
TCGCCATCGCAGAGGCAGTTCCCACAACAGGACCCATTCGGGTCCGTCGC
CAGGTGCTTGGAGGTTCCTTAGCCTCCAATCCCGCTGGAGGGGCTGATGC
TCGGTTGAATCTCAGCAAGGGCATTGGCAATCCCAACCATAATGTGGTAG
GTCAGGTTTTCGCCGCCGGAAACACTCAAAGCGGTCCAGTCACAACTGGC
GGAACTTTGGCCTACAACAATGCTGGTCATGGTGCCTCTTTGACCAAAAC
ACACACGCCCGGAGTGAAGGATGTCTTCCAGCAGGAGGCCCATGCCAATT
TATTCAACAATGGCAGACACAATCTGGATGCCAAGGTCTTTGCTTCACAA
AATAAACTGGCCAATGGCTTCGAGTTCCAGCGCAATGGAGCTGGTCTGGA
TTACTCCCACATCAACGGACATGGTGGATCCTTGACGCACAGCAACTTCC
CAGGAATCGGCCAGCAACTCGGCCTGGACGGACGTGCTAATCTCTGGTCA
TCGCCCAATCGTGCTACTACCTTGGACCTCACGGGATCGGCGAGCAAGTG
GACGAGTGGTCCGTTTGCCAACCAGAAGCCAAACTTTGGTGCTGGCCTGG
GACTTTCCCACCACTTCGGTTAAAAGCTTTCTAGACC

BS15672.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG18372-PA 657 AttB-RA 1..657 17..673 3285 100 Plus
CG10146-PA 666 AttA-RA 55..644 62..651 2425 96.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
AttB-RB 879 CG18372-RB 31..690 15..674 3300 100 Plus
AttB-RA 788 CG18372-RA 31..690 15..674 3300 100 Plus
AttA-RA 790 CG10146-RA 64..695 42..673 2710 95.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14749573..14749976 271..674 2020 100 Plus
2R 25286936 2R 14747718..14748120 271..673 1790 96.3 Plus
2R 25286936 2R 14749253..14749508 15..270 1280 100 Plus
2R 25286936 2R 14747425..14747653 42..270 920 93.4 Plus
2R 25286936 2R 13394170..13394369 291..490 355 78.5 Plus
Blast to na_te.dros performed on 2015-01-30 16:56:53 has no hits.

BS15672.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:44 Download gff for BS15672.5prime
Subject Subject Range Query Range Percent Splice Strand
AttB-PA 1..657 17..673 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:12:35 Download gff for BS15672.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18372-PA 1..657 17..673 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 15:55:11 Download gff for BS15672.5prime
Subject Subject Range Query Range Percent Splice Strand
AttB-RA 24..694 8..679 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:11:55 Download gff for BS15672.5prime
Subject Subject Range Query Range Percent Splice Strand
AttB-RA 24..694 8..679 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:11:55 Download gff for BS15672.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14749246..14749508 8..270 98 -> Plus
2R 14749573..14749980 271..679 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 15:55:11 Download gff for BS15672.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10636751..10637013 8..270 98 -> Plus
arm_2R 10637078..10637485 271..679 99   Plus

BS15672.pep Sequence

Translation from 16 to 672

> BS15672.pep
MQKTSILILALFAIAEAVPTTGPIRVRRQVLGGSLASNPAGGADARLNLS
KGIGNPNHNVVGQVFAAGNTQSGPVTTGGTLAYNNAGHGASLTKTHTPGV
KDVFQQEAHANLFNNGRHNLDAKVFASQNKLANGFEFQRNGAGLDYSHIN
GHGGSLTHSNFPGIGQQLGLDGRANLWSSPNRATTLDLTGSASKWTSGPF
ANQKPNFGAGLGLSHHFG*

BS15672.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
AttB-PB 218 CG18372-PB 1..218 1..218 1148 100 Plus
AttB-PA 218 CG18372-PA 1..218 1..218 1148 100 Plus
AttA-PA 221 CG10146-PA 1..221 1..218 1101 95 Plus
AttC-PB 241 CG4740-PB 37..241 19..218 739 69.9 Plus
AttD-PA 181 CG7629-PA 6..181 36..217 194 32.8 Plus