Clone BS15673 Report

Search the DGRC for BS15673

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:156
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG40042-RA
Protein status:BS15673.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15673.5prime Sequence

651 bp (651 high quality bases) assembled on 2006-12-21

> BS15673.5prime
GAAGTTACCTTTCGACATGAGTGACAATTTTTCAAGAACACCATATTCTG
ATGGGCACGCTGCAACCCATGAGGAAGCATCAAAACCCCACTACACTACC
ACTACGAGTTCTTTTAGTAGAACTCCGGTCTCGCCGTACCTCAACTATGA
TTCGCGATATCTGCAGCAAGCACAGCCAGAGTTCATTTTTCCCGAAGGGG
CCAACAAGCAGCGTGGACGCTTCGAGTTGGCCTTCTCTCAGATAGGCACT
TCGGTAATGATTGGCGGTGGAATTGGCGGCCTAGCAGGTGTTTATAATGG
TTTAAAAGTCACAAAAGCACTCGAGCAGAAGGGAAAAGTTCGTCGAACAC
AGTTACTTAATCACATTATGAAGCAAGGTTCCGGCACAGCTAACACATTA
GGTACATTGACGGTGCTGTATTCGGCTTGTGGAGTTTTGCTGCAGTTTTT
CCGCGGAGAAGATGATCATATAAACACAGTAATTGCGGGCTCTGCCACAG
GACTATTATACAAGTCAACAGCTGGCCTTAGGACGTGTGCTTTTGGTGGA
GCTATTGGGCTGGGCATCTCGTCCCTCTATTGCTTATACCTAATAGCACA
GGAAAACAGTTCGAACTCAAGTCCCAAATACCTATAGAAGCTTTCTAGAC
C

BS15673.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 19:25:30 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 03:27:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG40042-RA 893 CG40042-RA 199..820 17..638 3110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 03:27:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23312946..23313230 353..69 1425 100 Minus
2L 23513712 2L 23312719..23312888 521..352 850 100 Minus
2L 23513712 2L 23312538..23312658 638..518 605 100 Minus
2L 23513712 2L 23313329..23313380 68..17 260 100 Minus
Blast to na_te.dros performed on 2015-01-31 03:27:33 has no hits.

BS15673.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 20:48:08 Download gff for BS15673.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40042-RA 192..820 11..638 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 05:21:03 Download gff for BS15673.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40042-RA 192..820 11..638 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 05:21:03 Download gff for BS15673.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 23312538..23312654 522..638 100 <- Minus
2L 23312719..23312888 352..521 100 <- Minus
2L 23312948..23313230 69..351 100 <- Minus
2L 23313329..23313387 11..68 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 20:48:08 Download gff for BS15673.5prime
Subject Subject Range Query Range Percent Splice Strand
2LHet 168053..168169 522..638 100 <- Minus
2LHet 168234..168403 352..521 100 <- Minus
2LHet 168463..168745 69..351 100 <- Minus
2LHet 168844..168902 11..68 96   Minus

BS15673.3prime Sequence

651 bp (651 high quality bases) assembled on 2006-12-21

> BS15673.3prime
ATGGTCTAGAAAGCTTCTACTTGTAGTTGGGACTTGAGTTCGAACTGTTT
TCCTGTGCTATTAGGTATAAGCAATAGAGGGACGAGATGCCCATCTCAAT
AGCTCCACCAAAAGCACACGTCCTAAGGCCAGCTGTTGACTTGTATAATA
GTCCTGTGGCAGAGCCCGCAATTACTGTGTTTATATGATCATCTTCTCCG
CGGAAAAACTGCAGCAAAACTCCACAAGCCGAATACAGCACCGTCAATGT
ACCTAATGTGTTAGCTGTGCCGGAACCTTGCTTCATAATGTGATTAAGTA
ACTGTGTTCGACGAACTTTTCCCTTCTGCTCGAGTGCTTTTGTGACTTTT
AAACCATTATAAACACCTGCTAGGCCGCCAATTCCACCGCCAATCATTAC
CGAAGTGCCTATCTGAGAGAAGGCCAACTCGAAGCGTCCACGCTGCTTGT
TGGCCCCTTCGGGAAAAATGAACTCTGGCTGTGCTTGCTGCAGATATCGC
GAATCATAGTTGAGGTACGGCGAGACCGGAGTTCTACTAAAAGAACTCGT
AGTGGTAGTGTAGTGGGGTTTTGATGCTTCCTCATGGGTTGCAGCGTGCC
CATCAGAATATGGTGTTCTTGAAAAATTGTCACTCATGTCGACTGATAAC
T

BS15673.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 19:25:29 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:07:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG40042-RA 893 CG40042-RA 199..813 637..23 3030 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23312946..23313230 301..585 1425 100 Plus
2L 23513712 2L 23312719..23312888 133..302 850 100 Plus
2L 23513712 2L 23312545..23312658 23..136 525 97.4 Plus
2L 23513712 2L 23313329..23313380 586..637 260 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:07:04 has no hits.

BS15673.3prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 16:40:55 Download gff for BS15673.3prime
Subject Subject Range Query Range Percent Splice Strand
CG40042-RA 193..820 16..642 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:20 Download gff for BS15673.3prime
Subject Subject Range Query Range Percent Splice Strand
CG40042-RA 193..820 16..642 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:20 Download gff for BS15673.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 23312538..23312654 16..132 94 <- Plus
2L 23312719..23312888 133..302 100 <- Plus
2L 23312948..23313230 303..585 100 <- Plus
2L 23313329..23313386 586..642 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 16:40:55 Download gff for BS15673.3prime
Subject Subject Range Query Range Percent Splice Strand
2LHet 168053..168169 16..132 94 <- Plus
2LHet 168234..168403 133..302 100 <- Plus
2LHet 168463..168745 303..585 100 <- Plus
2LHet 168844..168901 586..642 96   Plus

BS15673.complete Sequence

653 bp assembled on 2006-11-29

GenBank Submission: FJ637944

> BS15673.complete
GAAGTTATCAGTCGACATGAGTGACAATTTTTCAAGAACACCATATTCTG
ATGGGCACGCTGCAACCCATGAGGAAGCATCAAAACCCCACTACACTACC
ACTACGAGTTCTTTTAGTAGAACTCCGGTCTCGCCGTACCTCAACTATGA
TTCGCGATATCTGCAGCAAGCACAGCCAGAGTTCATTTTTCCCGAAGGGG
CCAACAAGCAGCGTGGACGCTTCGAGTTGGCCTTCTCTCAGATAGGCACT
TCGGTAATGATTGGCGGTGGAATTGGCGGCCTAGCAGGTGTTTATAATGG
TTTAAAAGTCACAAAAGCACTCGAGCAGAAGGGAAAAGTTCGTCGAACAC
AGTTACTTAATCACATTATGAAGCAAGGTTCCGGCACAGCTAACACATTA
GGTACATTGACGGTGCTGTATTCGGCTTGTGGAGTTTTGCTGCAGTTTTT
CCGCGGAGAAGATGATCATATAAACACAGTAATTGCGGGCTCTGCCACAG
GACTATTATACAAGTCAACAGCTGGCCTTAGGACGTGTGCTTTTGGTGGA
GCTATTGGGCTGGGCATCTCGTCCCTCTATTGCTTATACCTAATAGCACA
GGAAAACAGTTCGAACTCAAGTCCCAAATACCTATAGAAGCTTTCTAGAC
CAT

BS15673.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG40042-RA 621 CG40042-PA 1..621 17..637 3105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG40042-RA 893 CG40042-RA 199..820 17..638 3110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23312946..23313230 353..69 1425 100 Minus
2L 23513712 2L 23312719..23312888 521..352 850 100 Minus
2L 23513712 2L 23312538..23312658 638..518 605 100 Minus
2L 23513712 2L 23313329..23313380 68..17 260 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:28:52 has no hits.

BS15673.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:26 Download gff for BS15673.complete
Subject Subject Range Query Range Percent Splice Strand
CG40042-RA 1..621 17..637 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:17 Download gff for BS15673.complete
Subject Subject Range Query Range Percent Splice Strand
CG40042-RA 220..847 12..638 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:33 Download gff for BS15673.complete
Subject Subject Range Query Range Percent Splice Strand
CG40042-RA 199..819 17..637 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:26 Download gff for BS15673.complete
Subject Subject Range Query Range Percent Splice Strand
CG40042-RA 220..847 12..638 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:02:24 Download gff for BS15673.complete
Subject Subject Range Query Range Percent Splice Strand
CG40042-RA 199..819 17..637 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:02:24 Download gff for BS15673.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23312948..23313230 69..351 100 <- Minus
2L 23313329..23313380 17..68 100   Minus
2L 23312539..23312654 522..637 100 <- Minus
2L 23312719..23312888 352..521 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:33 Download gff for BS15673.complete
Subject Subject Range Query Range Percent Splice Strand
2LHet 168054..168169 522..637 100 <- Minus
2LHet 168234..168403 352..521 100 <- Minus
2LHet 168463..168745 69..351 100 <- Minus
2LHet 168844..168895 17..68 100   Minus

BS15673.pep Sequence

Translation from 16 to 636

> BS15673.pep
MSDNFSRTPYSDGHAATHEEASKPHYTTTTSSFSRTPVSPYLNYDSRYLQ
QAQPEFIFPEGANKQRGRFELAFSQIGTSVMIGGGIGGLAGVYNGLKVTK
ALEQKGKVRRTQLLNHIMKQGSGTANTLGTLTVLYSACGVLLQFFRGEDD
HINTVIAGSATGLLYKSTAGLRTCAFGGAIGLGISSLYCLYLIAQENSSN
SSPKYL*

BS15673.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG40042-PA 206 CG40042-PA 1..206 1..206 1064 100 Plus