Clone BS15677 Report

Search the DGRC for BS15677

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:156
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG4259-RA
Protein status:BS15677.pep: full length peptide match
Sequenced Size:869

Clone Sequence Records

BS15677.3prime Sequence

867 bp (720 high quality bases) assembled on 2006-12-21

> BS15677.3prime
TCCCTTAAGGGGCGCGCCAAACGAATGGTCTAGAAAGCTTTCACCTTTTG
GGACGAAAGTTCGCTTCAAGTCTTAAATGGTAGTCAATCCAAGGGAGCAG
ACCAGCTACATTCGTAAAGACGATGAATGTATTTTCGACAGGCTTTTGAC
TTAACCAGTTCACAATGCCCACCTGTGCGTACTTATATGGATATGTAAGT
ATCCGACAAACCAGAGGAGCCCCACCGTCTCCACTGCAATCTATGCCTTC
CAGACCTTTCCCACAGATTTGCTGGATGGGCAGCTTTCGAGAGCTACACA
TACCCATGCTCAAAAGATCGACCTGGACCGTCTTGAGAACGGTGGGGTAG
TCCGTCGAGTTCAAATATACTTTTCCCCAGCCGTTGAAGAAGCAGGATCC
TTTTTGAATACCAGCTTCTTGTAGGTACAATGGGATTAAATTAATGTTGG
CTGTCATCTCAAATGCGGATACCAGAATGAGTAACGCCATGTTGTTTTCG
GCATTGAATCTGTTGAACTGTTCATGGGAGACTATATTCAGCACCTCGAG
ATCCACGTGCTGCTGGTCAGCCGTAGTCGAGGTATCCCATTCGCCAGCTC
GCACCACCAGATCATACTTGGTTGTTCCATTCAGAATATGAGCGGCAGTA
AGGACCACATTTGGATTAATCAGAGATCCCACTCCTATATAGCGAAACAG
CCAATCCCTCTGGTCGAGCACAGAAACCACCCAGGGAAATGTCGCTCTGG
GATTACTGCCATATGTTTCACGTCGTATCTGATTGTAGTTAAAGTATTGA
CTATTCACAAGGCTGAATATCAGTGTCGTGAGAAACGCAAAGTATAGCGA
CATGTCGACTGATAACT

BS15677.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4259-PA 813 CG4259-RA 1..805 853..49 4000 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4259-RB 1867 CG4259-RB 31..845 853..39 4030 99.6 Minus
CG4259-RA 964 CG4259-RA 31..845 853..39 4030 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2128331..2129073 39..781 3685 99.7 Plus
2L 23513712 2L 2129133..2129207 779..853 360 98.7 Plus
Blast to na_te.dros performed on 2015-02-12 11:40:09 has no hits.

BS15677.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:54 Download gff for BS15677.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4259-PA 1..813 41..853 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:12:45 Download gff for BS15677.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4259-PA 1..813 41..853 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 23:19:40 Download gff for BS15677.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4259-RA 29..848 36..856 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:43:14 Download gff for BS15677.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4259-RA 29..848 36..856 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:43:14 Download gff for BS15677.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2128338..2129070 45..778 99 <- Plus
2L 2129133..2129209 779..856 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 23:19:40 Download gff for BS15677.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2128338..2129070 45..778 99 <- Plus
arm_2L 2129133..2129209 779..856 97   Plus

BS15677.5prime Sequence

838 bp (819 high quality bases) assembled on 2006-12-21

> BS15677.5prime
GAAGTTATCCTTTGACATGTCGCTATACTTTGCGTTTCTCACGACACTGA
TAATCAGCCTTGTGAATAGTCAATACTTTAACTACTATCAGATACGACGT
GAAACATATGGCAGTAATCCCAGAGCGACATTTCCCTGGGTGGTTTCTGT
GCTCGACCAGAGGGATTGGCTGTTTCGCTATATAGGAGTGGGATCTCTGA
TTAATCCAAATGTGGTCCTTACTGCCGCTCATATTCTGAATGGAACAACC
AAGTATGATCTGGTGGTGCGAGCTGGCGAATGGGATACCTCGACTACGGC
TGACCAGCAGCACGTGGATCTCGAGGTGCTGAATATAGTCTCCCATGAAC
AGTTCAACAGATTCAATGCCGAAAACAACATGGCGTTACTCATTCTGGTA
TCCGCATTTGAGATGACAGCCAACATTAATTTAATCCCATTGTACCTACA
AGAAGCTGGTATTCAAAAAGGATCCTGCTTCTTCAACGGCTGGGGAAAAG
TATATTTGAACTCGACGGACTACCCCACCGTTCTCAAGACGGTCCAGGTC
GATCTTTTGAGCATGGGTATGTGTAGCTCTCGAAAGCTGCCCATCCAGCA
AATCTGTGGGAAAGGTCTGGAAGGCATAGATTGCAGTGGAGACGGTGGGG
CTCCTCTGGTTTGTCGGATACTTACATATCCATATAAGTACGCACAGGTG
GGCATTGTGAACTGGTTAAGTCAAAAGCCTGTCGAAAATACATTCATCGT
CTTTACGAATGTAGCTGGTCTGCTCCCTTGGATTGACTACCATTTAAGAC
TTGAAGCGAACTTTCGTCCCAGAAGTTGAAAGCTTTCT

BS15677.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4259-PA 813 CG4259-RA 1..813 17..829 4040 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4259-RB 1867 CG4259-RB 31..845 17..831 4060 99.9 Plus
CG4259-RA 964 CG4259-RA 31..845 17..831 4060 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2128331..2129073 831..89 3715 100 Minus
2L 23513712 2L 2129133..2129207 91..17 360 98.7 Minus
Blast to na_te.dros performed on 2015-02-02 13:51:18 has no hits.

BS15677.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:55 Download gff for BS15677.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4259-PA 1..813 17..829 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:12:47 Download gff for BS15677.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4259-PA 1..813 17..829 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:11:15 Download gff for BS15677.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4259-RA 29..848 14..834 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:49:18 Download gff for BS15677.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4259-RA 29..848 14..834 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:49:18 Download gff for BS15677.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2128328..2129078 85..834 99 -> Minus
2L 2129140..2129210 16..84 95 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:11:15 Download gff for BS15677.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2128328..2129078 85..834 99 -> Minus
arm_2L 2129140..2129210 16..84 95 -> Minus

BS15677.complete Sequence

869 bp assembled on 2009-08-24

GenBank Submission: KX803073

> BS15677.complete
GAAGTTATCAGTCGACATGTCGCTATACTTTGCGTTTCTCACGACACTGA
TAATCAGCCTTGTGAATAGTCAATACTTTAACTACAATCAGATACGACGT
GAAACATATGGCAGTAATCCCAGAGCGACATTTCCCTGGGTGGTTTCTGT
GCTCGACCAGAGGGATTGGCTGTTTCGCTATATAGGAGTGGGATCTCTGA
TTAATCCAAATGTGGTCCTTACTGCCGCTCATATTCTGAATGGAACAACC
AAGTATGATCTGGTGGTGCGAGCTGGCGAATGGGATACCTCGACTACGGC
TGACCAGCAGCACGTGGATCTCGAGGTGCTGAATATAGTCTCCCATGAAC
AGTTCAACAGATTCAATGCCGAAAACAACATGGCGTTACTCATTCTGGTA
TCCGCATTTGAGATGACAGCCAACATTAATTTAATCCCATTGTACCTACA
AGAAGCTGGTATTCAAAAAGGATCCTGCTTCTTCAACGGCTGGGGAAAAG
TATATTTGAACTCGACGGACTACCCCACCGTTCTCAAGACGGTCCAGGTC
GATCTTTTGAGCATGGGTATGTGTAGCTCTCGAAAGCTGCCCATCCAGCA
AATCTGTGGGAAAGGTCTGGAAGGCATAGATTGCAGTGGAGACGGTGGGG
CTCCTCTGGTTTGTCGGATACTTACATATCCATATAAGTACGCACAGGTG
GGCATTGTGAACTGGTTAAGTCAAAAGCCTGTCGAAAATACATTCATCGT
CTTTACGAATGTAGCTGGTCTGCTCCCTTGGATTGACTACCATTTAAGAC
TTGAAGCGAACTTTCGTCCCAGAAGTTGAAAGCTTTCTAGACCATTCGTT
TGGCGCGCCCCTTAAGGGA

BS15677.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4259-RB 813 CG4259-PB 1..813 17..829 4065 100 Plus
CG4259-RA 813 CG4259-PA 1..813 17..829 4065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4259-RB 1867 CG4259-RB 31..845 17..831 4075 100 Plus
CG4259-RA 964 CG4259-RA 31..845 17..831 4075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2128331..2129073 831..89 3715 100 Minus
2L 23513712 2L 2129133..2129207 91..17 375 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:31:38 has no hits.

BS15677.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:35 Download gff for BS15677.complete
Subject Subject Range Query Range Percent Splice Strand
CG4259-RA 5..822 17..834 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:12 Download gff for BS15677.complete
Subject Subject Range Query Range Percent Splice Strand
CG4259-RA 31..848 17..834 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:44 Download gff for BS15677.complete
Subject Subject Range Query Range Percent Splice Strand
CG4259-RA 31..848 17..834 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:44 Download gff for BS15677.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2128328..2129070 92..834 99 <- Minus
2L 2129133..2129207 17..91 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:12 Download gff for BS15677.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2128328..2129070 92..834 99 <- Minus
arm_2L 2129133..2129207 17..91 100   Minus

BS15677.pep Sequence

Translation from 16 to 828

> BS15677.pep
MSLYFAFLTTLIISLVNSQYFNYNQIRRETYGSNPRATFPWVVSVLDQRD
WLFRYIGVGSLINPNVVLTAAHILNGTTKYDLVVRAGEWDTSTTADQQHV
DLEVLNIVSHEQFNRFNAENNMALLILVSAFEMTANINLIPLYLQEAGIQ
KGSCFFNGWGKVYLNSTDYPTVLKTVQVDLLSMGMCSSRKLPIQQICGKG
LEGIDCSGDGGAPLVCRILTYPYKYAQVGIVNWLSQKPVENTFIVFTNVA
GLLPWIDYHLRLEANFRPRS*

BS15677.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4259-PB 270 CG4259-PB 1..270 1..270 1424 100 Plus
CG4259-PA 270 CG4259-PA 1..270 1..270 1424 100 Plus
CG14990-PA 322 CG14990-PA 72..309 39..268 380 37.2 Plus
CG3117-PB 347 CG3117-PB 77..332 14..260 344 34.2 Plus
CG18478-PA 294 CG18478-PA 46..280 30..256 339 34.7 Plus