Clone Sequence Records
BS15677.3prime Sequence
867 bp (720 high quality bases) assembled on 2006-12-21
> BS15677.3prime
TCCCTTAAGGGGCGCGCCAAACGAATGGTCTAGAAAGCTTTCACCTTTTG
GGACGAAAGTTCGCTTCAAGTCTTAAATGGTAGTCAATCCAAGGGAGCAG
ACCAGCTACATTCGTAAAGACGATGAATGTATTTTCGACAGGCTTTTGAC
TTAACCAGTTCACAATGCCCACCTGTGCGTACTTATATGGATATGTAAGT
ATCCGACAAACCAGAGGAGCCCCACCGTCTCCACTGCAATCTATGCCTTC
CAGACCTTTCCCACAGATTTGCTGGATGGGCAGCTTTCGAGAGCTACACA
TACCCATGCTCAAAAGATCGACCTGGACCGTCTTGAGAACGGTGGGGTAG
TCCGTCGAGTTCAAATATACTTTTCCCCAGCCGTTGAAGAAGCAGGATCC
TTTTTGAATACCAGCTTCTTGTAGGTACAATGGGATTAAATTAATGTTGG
CTGTCATCTCAAATGCGGATACCAGAATGAGTAACGCCATGTTGTTTTCG
GCATTGAATCTGTTGAACTGTTCATGGGAGACTATATTCAGCACCTCGAG
ATCCACGTGCTGCTGGTCAGCCGTAGTCGAGGTATCCCATTCGCCAGCTC
GCACCACCAGATCATACTTGGTTGTTCCATTCAGAATATGAGCGGCAGTA
AGGACCACATTTGGATTAATCAGAGATCCCACTCCTATATAGCGAAACAG
CCAATCCCTCTGGTCGAGCACAGAAACCACCCAGGGAAATGTCGCTCTGG
GATTACTGCCATATGTTTCACGTCGTATCTGATTGTAGTTAAAGTATTGA
CTATTCACAAGGCTGAATATCAGTGTCGTGAGAAACGCAAAGTATAGCGA
CATGTCGACTGATAACT
BS15677.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4259-PA | 813 | CG4259-RA | 1..805 | 853..49 | 4000 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:40:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4259-RB | 1867 | CG4259-RB | 31..845 | 853..39 | 4030 | 99.6 | Minus |
CG4259-RA | 964 | CG4259-RA | 31..845 | 853..39 | 4030 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:40:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2128331..2129073 | 39..781 | 3685 | 99.7 | Plus |
2L | 23513712 | 2L | 2129133..2129207 | 779..853 | 360 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:40:09 has no hits.
BS15677.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:54 Download gff for
BS15677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4259-PA | 1..813 | 41..853 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:12:45 Download gff for
BS15677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4259-PA | 1..813 | 41..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 23:19:40 Download gff for
BS15677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4259-RA | 29..848 | 36..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:43:14 Download gff for
BS15677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4259-RA | 29..848 | 36..856 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:43:14 Download gff for
BS15677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2128338..2129070 | 45..778 | 99 | <- | Plus |
2L | 2129133..2129209 | 779..856 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 23:19:40 Download gff for
BS15677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2128338..2129070 | 45..778 | 99 | <- | Plus |
arm_2L | 2129133..2129209 | 779..856 | 97 | | Plus |
BS15677.5prime Sequence
838 bp (819 high quality bases) assembled on 2006-12-21
> BS15677.5prime
GAAGTTATCCTTTGACATGTCGCTATACTTTGCGTTTCTCACGACACTGA
TAATCAGCCTTGTGAATAGTCAATACTTTAACTACTATCAGATACGACGT
GAAACATATGGCAGTAATCCCAGAGCGACATTTCCCTGGGTGGTTTCTGT
GCTCGACCAGAGGGATTGGCTGTTTCGCTATATAGGAGTGGGATCTCTGA
TTAATCCAAATGTGGTCCTTACTGCCGCTCATATTCTGAATGGAACAACC
AAGTATGATCTGGTGGTGCGAGCTGGCGAATGGGATACCTCGACTACGGC
TGACCAGCAGCACGTGGATCTCGAGGTGCTGAATATAGTCTCCCATGAAC
AGTTCAACAGATTCAATGCCGAAAACAACATGGCGTTACTCATTCTGGTA
TCCGCATTTGAGATGACAGCCAACATTAATTTAATCCCATTGTACCTACA
AGAAGCTGGTATTCAAAAAGGATCCTGCTTCTTCAACGGCTGGGGAAAAG
TATATTTGAACTCGACGGACTACCCCACCGTTCTCAAGACGGTCCAGGTC
GATCTTTTGAGCATGGGTATGTGTAGCTCTCGAAAGCTGCCCATCCAGCA
AATCTGTGGGAAAGGTCTGGAAGGCATAGATTGCAGTGGAGACGGTGGGG
CTCCTCTGGTTTGTCGGATACTTACATATCCATATAAGTACGCACAGGTG
GGCATTGTGAACTGGTTAAGTCAAAAGCCTGTCGAAAATACATTCATCGT
CTTTACGAATGTAGCTGGTCTGCTCCCTTGGATTGACTACCATTTAAGAC
TTGAAGCGAACTTTCGTCCCAGAAGTTGAAAGCTTTCT
BS15677.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4259-PA | 813 | CG4259-RA | 1..813 | 17..829 | 4040 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:51:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4259-RB | 1867 | CG4259-RB | 31..845 | 17..831 | 4060 | 99.9 | Plus |
CG4259-RA | 964 | CG4259-RA | 31..845 | 17..831 | 4060 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:51:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2128331..2129073 | 831..89 | 3715 | 100 | Minus |
2L | 23513712 | 2L | 2129133..2129207 | 91..17 | 360 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-02 13:51:18 has no hits.
BS15677.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:55 Download gff for
BS15677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4259-PA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:12:47 Download gff for
BS15677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4259-PA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:11:15 Download gff for
BS15677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4259-RA | 29..848 | 14..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:49:18 Download gff for
BS15677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4259-RA | 29..848 | 14..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:49:18 Download gff for
BS15677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2128328..2129078 | 85..834 | 99 | -> | Minus |
2L | 2129140..2129210 | 16..84 | 95 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:11:15 Download gff for
BS15677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2128328..2129078 | 85..834 | 99 | -> | Minus |
arm_2L | 2129140..2129210 | 16..84 | 95 | -> | Minus |
BS15677.complete Sequence
869 bp assembled on 2009-08-24
GenBank Submission: KX803073
> BS15677.complete
GAAGTTATCAGTCGACATGTCGCTATACTTTGCGTTTCTCACGACACTGA
TAATCAGCCTTGTGAATAGTCAATACTTTAACTACAATCAGATACGACGT
GAAACATATGGCAGTAATCCCAGAGCGACATTTCCCTGGGTGGTTTCTGT
GCTCGACCAGAGGGATTGGCTGTTTCGCTATATAGGAGTGGGATCTCTGA
TTAATCCAAATGTGGTCCTTACTGCCGCTCATATTCTGAATGGAACAACC
AAGTATGATCTGGTGGTGCGAGCTGGCGAATGGGATACCTCGACTACGGC
TGACCAGCAGCACGTGGATCTCGAGGTGCTGAATATAGTCTCCCATGAAC
AGTTCAACAGATTCAATGCCGAAAACAACATGGCGTTACTCATTCTGGTA
TCCGCATTTGAGATGACAGCCAACATTAATTTAATCCCATTGTACCTACA
AGAAGCTGGTATTCAAAAAGGATCCTGCTTCTTCAACGGCTGGGGAAAAG
TATATTTGAACTCGACGGACTACCCCACCGTTCTCAAGACGGTCCAGGTC
GATCTTTTGAGCATGGGTATGTGTAGCTCTCGAAAGCTGCCCATCCAGCA
AATCTGTGGGAAAGGTCTGGAAGGCATAGATTGCAGTGGAGACGGTGGGG
CTCCTCTGGTTTGTCGGATACTTACATATCCATATAAGTACGCACAGGTG
GGCATTGTGAACTGGTTAAGTCAAAAGCCTGTCGAAAATACATTCATCGT
CTTTACGAATGTAGCTGGTCTGCTCCCTTGGATTGACTACCATTTAAGAC
TTGAAGCGAACTTTCGTCCCAGAAGTTGAAAGCTTTCTAGACCATTCGTT
TGGCGCGCCCCTTAAGGGA
BS15677.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:31:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4259-RB | 813 | CG4259-PB | 1..813 | 17..829 | 4065 | 100 | Plus |
CG4259-RA | 813 | CG4259-PA | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4259-RB | 1867 | CG4259-RB | 31..845 | 17..831 | 4075 | 100 | Plus |
CG4259-RA | 964 | CG4259-RA | 31..845 | 17..831 | 4075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2128331..2129073 | 831..89 | 3715 | 100 | Minus |
2L | 23513712 | 2L | 2129133..2129207 | 91..17 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:31:38 has no hits.
BS15677.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:35 Download gff for
BS15677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4259-RA | 5..822 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:12 Download gff for
BS15677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4259-RA | 31..848 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:44 Download gff for
BS15677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4259-RA | 31..848 | 17..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:44 Download gff for
BS15677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2128328..2129070 | 92..834 | 99 | <- | Minus |
2L | 2129133..2129207 | 17..91 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:12 Download gff for
BS15677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2128328..2129070 | 92..834 | 99 | <- | Minus |
arm_2L | 2129133..2129207 | 17..91 | 100 | | Minus |
BS15677.pep Sequence
Translation from 16 to 828
> BS15677.pep
MSLYFAFLTTLIISLVNSQYFNYNQIRRETYGSNPRATFPWVVSVLDQRD
WLFRYIGVGSLINPNVVLTAAHILNGTTKYDLVVRAGEWDTSTTADQQHV
DLEVLNIVSHEQFNRFNAENNMALLILVSAFEMTANINLIPLYLQEAGIQ
KGSCFFNGWGKVYLNSTDYPTVLKTVQVDLLSMGMCSSRKLPIQQICGKG
LEGIDCSGDGGAPLVCRILTYPYKYAQVGIVNWLSQKPVENTFIVFTNVA
GLLPWIDYHLRLEANFRPRS*
BS15677.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:44:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4259-PB | 270 | CG4259-PB | 1..270 | 1..270 | 1424 | 100 | Plus |
CG4259-PA | 270 | CG4259-PA | 1..270 | 1..270 | 1424 | 100 | Plus |
CG14990-PA | 322 | CG14990-PA | 72..309 | 39..268 | 380 | 37.2 | Plus |
CG3117-PB | 347 | CG3117-PB | 77..332 | 14..260 | 344 | 34.2 | Plus |
CG18478-PA | 294 | CG18478-PA | 46..280 | 30..256 | 339 | 34.7 | Plus |