Clone BS15678 Report

Search the DGRC for BS15678

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:156
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG10688-RA
Protein status:BS15678.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15678.3prime Sequence

795 bp (737 high quality bases) assembled on 2006-12-21

> BS15678.3prime
ATGGTCTAGAAAGCTTTCACCCTTCCAGAATCTCGGTGAGAATGCGTTGC
GTATCCTTGGGAGTATATACCCTATGGCTGATGGTTCGAGGATCGCTATA
GATCTCATAGTCATTGCCGCCCGGCTCCGTTTTATCGCCAAAGAAGTGGA
TTTCCTTGAACTTGTAGTGCGCTTCGATGTGTCGCAGGCAGTAGGTCTTG
TCCCAACCATGCGGGAAGACATCGAAGCTGATCTGACCACCAATCGAGTA
CGTGAGATCCACATCGGCAAACTCCTGCTTCAGGTCCTTGATCATTTTCT
CGCGCACCTTGTGCTCAATGTCGTATTCGGCGAACATGTTGCGCTCCTCC
CGAGTGCACTGCCTGCCAATGGGACATACGTTCATCATGCCATTTCGGAA
TTCGATAAAGGTGCCCCTCTTGATGGGCACATCCAGTTCGGACAGATAGC
GCAGCACAAAGTTAATGAAGCGTTTCACCGTCTCCTCGCCCAAATGCATG
ATGATATTCTGCTTTCCCACCTCCTTTCCGCCCTCAATCTGCACCAGCCC
ATTTTCTGGGAATATGAAGTCGAACTCGTTGAGTATCTTCCTGCCATTCA
GCTGCTCGAACATCTTCTCCAAATCCGAGCCTCCGACGATTCCGATGGTC
GCCCTCGGCTTAACCCGCGAGTAGAAGAACTCCTCGAACTCCGGAGTGAC
CACGGATCTGGGCATCGTTAGCGTGCCGTCCACGTCGAAGAGCAGCAGGA
TTTCATCACGCTTCAATGCGGCGGTGGTCATGTCGACTGATAACT

BS15678.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10688-PA 765 CG10688-RA 1..758 781..24 3565 98.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10688-RA 924 CG10688-RA 66..823 781..24 3655 98.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12534655..12535412 781..24 3655 98.8 Minus
Blast to na_te.dros performed 2015-01-30 16:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 3938..3977 426..465 110 75 Plus

BS15678.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:56 Download gff for BS15678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10688-PA 1..765 17..781 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:12:48 Download gff for BS15678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10688-PA 1..765 17..781 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 15:51:28 Download gff for BS15678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10688-RA 66..830 17..781 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:08:43 Download gff for BS15678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10688-RA 66..830 17..781 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:08:43 Download gff for BS15678.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12534655..12535413 20..781 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 15:51:28 Download gff for BS15678.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12527755..12528513 20..781 98 <- Minus

BS15678.5prime Sequence

795 bp (795 high quality bases) assembled on 2006-12-21

> BS15678.5prime
GAAGTTATCCTTCGACATGACCACCGCCGCATTGAAGCGTGATGAAATCC
TGCTGCTCTTCGACGTGGACGGCACGCTAACGATGCCCAGATCCGTGGTC
ACTCCGGAGTTCGAGGAGTTCTTCTACTCGCGGGTTAAGCCGAGGGCGAC
CATCGGAATCGTCGGAGGCTCGGATTTGGAGAAGATGTTCGAGCAGCTGA
ATGGCAGGAAGATACTCAACGAGTTCGACTTCATATTCCCAGAAAATGGG
CTGGTGCAGATTGAGGGCGGAAAGGAGGTGGGAAAGCAGAATATCATCAT
GCATTTGGGCGAGGAGACGGTGAAACGCTTCATTAACTTTGTGCTGCGCT
ATCTGTCCGAACTGGATGTGCCCATCAAGAGGGGCACCTTTATCGAATTC
CGAAATGGCATGATGAACGTATGTCCCATTGGCAGGCAGTGCACTCGGGA
GGAGCGCAACATGTTCGCCGAATACGACATTGAGCACAAGGTGCGCGAGA
AAATGATCAAGGACCTGAAGCAGGAGTTTGCCGATGTGGATCTCACGTAC
TCGATTGGTGGTCAGATCAGCTTCGATGTCTTCCCGCATGGTTGGGACAA
GACCTACTGCCTGCGACACATCGAAGCGCACTACAAGTTCAAGGAAATCC
ACTTCTTTGGCGATAAAACGGAGCCGGGCGGCAATGACTATGAGATCTAT
AGCGATCCTCGAACCATCAGCCATAGGGTATATACTCCCAAGGATACGCA
ACGCATTCTCACCGAGATTCTGGAGCTGTGAAAGCTTTCTAGACC

BS15678.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10688-PA 765 CG10688-RA 1..765 17..781 3600 98.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 12:19:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG10688-RA 924 CG10688-RA 66..830 17..781 3690 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 12:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12534655..12535419 17..781 3690 98.8 Plus
Blast to na_te.dros performed 2015-01-30 12:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 3938..3977 372..333 110 75 Minus

BS15678.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:33:57 Download gff for BS15678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10688-PA 1..765 17..781 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:12:50 Download gff for BS15678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10688-PA 1..765 17..781 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:34:32 Download gff for BS15678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10688-RA 66..840 17..792 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 13:59:28 Download gff for BS15678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10688-RA 66..840 17..792 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 13:59:28 Download gff for BS15678.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12534655..12535429 17..792 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:34:32 Download gff for BS15678.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12527755..12528529 17..792 98   Plus

BS15678.complete Sequence

797 bp assembled on 2006-11-29

GenBank Submission: FJ637945

> BS15678.complete
GAAGTTATCAGTCGACATGACCACCGCCGCATTGAAGCGTGATGAAATCC
TGCTGCTCTTCGACGTGGACGGCACGCTAACGATGCCCAGATCCGTGGTC
ACTCCGGAGTTCGAGGAGTTCTTCTACTCGCGGGTTAAGCCGAGGGCGAC
CATCGGAATCGTCGGAGGCTCGGATTTGGAGAAGATGTTCGAGCAGCTGA
ATGGCAGGAAGATACTCAACGAGTTCGACTTCATATTCCCAGAAAATGGG
CTGGTGCAGATTGAGGGCGGAAAGGAGGTGGGAAAGCAGAATATCATCAT
GCATTTGGGCGAGGAGACGGTGAAACGCTTCATTAACTTTGTGCTGCGCT
ATCTGTCCGAACTGGATGTGCCCATCAAGAGGGGCACCTTTATCGAATTC
CGAAATGGCATGATGAACGTATGTCCCATTGGCAGGCAGTGCACTCGGGA
GGAGCGCAACATGTTCGCCGAATACGACATTGAGCACAAGGTGCGCGAGA
AAATGATCAAGGACCTGAAGCAGGAGTTTGCCGATGTGGATCTCACGTAC
TCGATTGGTGGTCAGATCAGCTTCGATGTCTTCCCGCATGGTTGGGACAA
GACCTACTGCCTGCGACACATCGAAGCGCACTACAAGTTCAAGGAAATCC
ACTTCTTTGGCGATAAAACGGAGCCGGGCGGCAATGACTATGAGATCTAT
AGCGATCCTCGAACCATCAGCCATAGGGTATATACTCCCAAGGATACGCA
ACGCATTCTCACCGAGATTCTGGAGCTGTGAAAGCTTTCTAGACCAT

BS15678.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10688-RA 765 CG10688-PA 1..765 17..781 3690 98.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10688-RA 924 CG10688-RA 66..830 17..781 3690 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12534655..12535419 17..781 3690 98.8 Plus
Blast to na_te.dros performed 2014-11-27 23:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 3938..3977 372..333 110 75 Minus

BS15678.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:06 Download gff for BS15678.complete
Subject Subject Range Query Range Percent Splice Strand
CG10688-RA 1..765 17..781 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:27 Download gff for BS15678.complete
Subject Subject Range Query Range Percent Splice Strand
CG10688-RA 66..840 17..792 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:52 Download gff for BS15678.complete
Subject Subject Range Query Range Percent Splice Strand
CG10688-RA 66..829 17..780 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:06 Download gff for BS15678.complete
Subject Subject Range Query Range Percent Splice Strand
CG10688-RA 66..840 17..792 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:20 Download gff for BS15678.complete
Subject Subject Range Query Range Percent Splice Strand
CG10688-RA 66..829 17..780 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:20 Download gff for BS15678.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12534655..12535418 17..780 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:52 Download gff for BS15678.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12527755..12528518 17..780 98   Plus

BS15678.pep Sequence

Translation from 16 to 780

> BS15678.pep
MTTAALKRDEILLLFDVDGTLTMPRSVVTPEFEEFFYSRVKPRATIGIVG
GSDLEKMFEQLNGRKILNEFDFIFPENGLVQIEGGKEVGKQNIIMHLGEE
TVKRFINFVLRYLSELDVPIKRGTFIEFRNGMMNVCPIGRQCTREERNMF
AEYDIEHKVREKMIKDLKQEFADVDLTYSIGGQISFDVFPHGWDKTYCLR
HIEAHYKFKEIHFFGDKTEPGGNDYEIYSDPRTISHRVYTPKDTQRILTE
ILEL*

BS15678.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10688-PA 254 CG10688-PA 1..254 1..254 1340 100 Plus