Clone BS15680 Report

Search the DGRC for BS15680

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:156
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptImpL2-RC
Protein status:BS15680.pep: full length peptide match
Sequenced Size:860

Clone Sequence Records

BS15680.3prime Sequence

858 bp (815 high quality bases) assembled on 2006-12-21

> BS15680.3prime
TCCCTTAAGGGGCGCGCCAAACGAATGGTCTAGAAAGCTTTTACCCTTCC
TCATTAAGTACGGGATACACGAAGGTATCGGCGGTATCCTTTCCGACGAC
GTTGCGGGCTATGCACTTGTAGTTGCCCATATCCTCCCACTTGATCTCGG
AGATCAGAAGATCGCCGTTGGCCAGCACCCTGTGGCGATGTCCTTGGACG
ATCTCCTTGTTCTCGTTATTCAACCAGGTGATCTCGGCGCGGGGACGGGC
GTGCACGCGGCAGGGCAGCTGAATGTTGGAGCCCATGAGGTCCAGATGCG
TCTTCTCGGTGTAGATGATTCGCGGTTTCTGGGCACCCGGGTAGGTCTTC
TCCGGCGTCAGACGAGAGGAGCGAGGAGGATGCACCACAGTGCTGGCATA
GATGGTCTTGGAGCCAGTGCGTCCCACACACGTGTAGGTGCGGGCCTCGC
TCAGCACGTGGTCGATGATATGCGACGATCGGACGCGCACAATGGCACTG
GGCGCCTCTTCGGCAACCTGGTTGGAGTCCAGATCATCGAGCTCCGAGCG
GGGCAGGTGACCCACCACCCACTGGATGCTGGGCACTTGGGAGCCCATCA
TCTCGCAAACGATCTCGATGGTGGCTCCATCGGCCTGCTGCAGCTTCGTC
GGCGGCGTCTTGGTGAACTTGAGCCAGTCGGCTTCGAAGGCTCGGTTGCG
TGGCTTCTCCTCCTCCGCCTCGATGGAGTTATCCACGTCGTTGCTATCGT
CTACCAGGTCCACGGCTCTTCCGCGGACAGTGGCGATGCTGCCGAACAGC
AGCAGCGCTAAGGCGCACACATGTAAATTCATTTTCGCCTCCATGTCGAC
TGATAACT

BS15680.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG15009-PC 804 ImpL2-RC 1..799 844..46 3995 100 Minus
CG15009-PA 801 ImpL2-RA 6..796 836..46 3955 100 Minus
CG15009-PB 792 ImpL2-RB 1..787 832..46 3935 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL2-RC 989 CG15009-RC 59..857 844..46 3995 100 Minus
ImpL2-RD 2355 CG15009-RD 729..1519 836..46 3955 100 Minus
ImpL2-RB 1651 CG15009-RB 729..1519 836..46 3955 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4224927..4225707 56..836 3905 100 Plus
Blast to na_te.dros performed on 2015-02-10 14:57:23 has no hits.

BS15680.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:34:00 Download gff for BS15680.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15009-PC 1..804 41..844 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:12:54 Download gff for BS15680.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15009-PC 1..804 41..844 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:21:54 Download gff for BS15680.3prime
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RC 59..863 40..844 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:48:24 Download gff for BS15680.3prime
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RC 59..863 40..844 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:48:24 Download gff for BS15680.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4224922..4225711 50..843 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:21:54 Download gff for BS15680.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4224922..4225711 50..843 99   Plus

BS15680.5prime Sequence

816 bp (714 high quality bases) assembled on 2006-12-21

> BS15680.5prime
GAAGTTATCCCTTTACATGGAGGCGAAAATGAATTTACATGTGTGCGCCT
TAGCGCTGCTGCTGTTCGGCAGCATCGCCACTGTCCGCGGAAGAGCCGTG
GACCTGGTAGACGATAGCAACGACGTGGATAACTCCATCGAGGCGGAGGA
GGAGAAGCCACGCAACCGAGCCTTCGAAGCCGACTGGCTCAAGTTCACCA
AGACGCCGCCGACGAAGCTGCAGCAGGCCGATGGAGCCACCATCGAGATC
GTTTGCGAGATGATGGGCTCCCAAGTGCCCAGCATCCAGTGGGTGGTGGG
TCACCTGCCCCGCTCGGAGCTCGATGATCTGGACTCCAACCAGGTTGCCG
AAGAGGCGCCCAGTGCCATTGTGCGCGTCCGATCGTCGCATATCATCGAC
CACGTGCTGAGCGAGGCCCGCACCTACACGTGTGTGGGACGCACTGGCTC
CAAGACCATCTATGCCAGCACTGTGGTGCATCCTCCTCGCTCCTCTCGTC
TGACGCCGGAGAAGACCTACCCGGGTGCCCAGAAACCGCGAATCATCTAC
ACCGAGAAGACGCATCTGGACCTCATGGGCTCCAACATTCAGCTGCCCTG
CCGCGTGCACGCCCGTCCCCGCGCCGAGATCACCTGGTTGAATAACGAGA
ACAAGGAGATCGTCCAAGGACATCGCCACAGGGTGCTGGCCAACGGCGAT
CTTCTGATCTCCGAGATNCAGTGGGAGGATATGGGCAACTACAAGTGCAT
AGCCCGCAACGTCGTCGGAAAGGATACCGCCGATACCTTCGTGTATCCCG
TACTTAATGAGGAAGA

BS15680.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG15009-PC 804 ImpL2-RC 1..800 17..816 3956 99.7 Plus
CG15009-PA 801 ImpL2-RA 6..797 25..816 3916 99.7 Plus
CG15009-PB 792 ImpL2-RB 1..788 29..816 3896 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 07:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL2-RC 989 CG15009-RC 59..858 17..816 3974 99.8 Plus
ImpL2-RD 2355 CG15009-RD 729..1520 25..816 3934 99.7 Plus
ImpL2-RB 1651 CG15009-RB 729..1520 25..816 3934 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 07:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4224927..4225707 805..25 3879 99.7 Minus
Blast to na_te.dros performed on 2015-02-08 07:34:34 has no hits.

BS15680.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:34:01 Download gff for BS15680.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15009-PC 1..799 17..815 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:12:55 Download gff for BS15680.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15009-PC 1..799 17..815 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 22:25:41 Download gff for BS15680.5prime
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RC 50..857 9..815 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 08:23:33 Download gff for BS15680.5prime
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RC 50..857 9..815 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 08:23:33 Download gff for BS15680.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4224922..4225711 18..811 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 22:25:41 Download gff for BS15680.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4224922..4225711 18..811 98   Minus

BS15680.complete Sequence

860 bp assembled on 2008-08-14

GenBank Submission: KX802583

> BS15680.complete
GAAGTTATCAGTCGACATGGAGGCGAAAATGAATTTACATGTGTGCGCCT
TAGCGCTGCTGCTGTTCGGCAGCATCGCCACTGTCCGCGGAAGAGCCGTG
GACCTGGTAGACGATAGCAACGACGTGGATAACTCCATCGAGGCGGAGGA
GGAGAAGCCACGCAACCGAGCCTTCGAAGCCGACTGGCTCAAGTTCACCA
AGACGCCGCCGACGAAGCTGCAGCAGGCCGATGGAGCCACCATCGAGATC
GTTTGCGAGATGATGGGCTCCCAAGTGCCCAGCATCCAGTGGGTGGTGGG
TCACCTGCCCCGCTCGGAGCTCGATGATCTGGACTCCAACCAGGTTGCCG
AAGAGGCGCCCAGTGCCATTGTGCGCGTCCGATCGTCGCATATCATCGAC
CACGTGCTGAGCGAGGCCCGCACCTACACGTGTGTGGGACGCACTGGCTC
CAAGACCATCTATGCCAGCACTGTGGTGCATCCTCCTCGCTCCTCTCGTC
TGACGCCGGAGAAGACCTACCCGGGTGCCCAGAAACCGCGAATCATCTAC
ACCGAGAAGACGCATCTGGACCTCATGGGCTCCAACATTCAGCTGCCCTG
CCGCGTGCACGCCCGTCCCCGCGCCGAGATCACCTGGTTGAATAACGAGA
ACAAGGAGATCGTCCAAGGACATCGCCACAGGGTGCTGGCCAACGGCGAT
CTTCTGATCTCCGAGATCAAGTGGGAGGATATGGGCAACTACAAGTGCAT
AGCCCGCAACGTCGTCGGAAAGGATACCGCCGATACCTTCGTGTATCCCG
TACTTAATGAGGAAGACTAAAAGCTTTCTAGACCATTCGTTTGGCGCGCC
CCTTAAGGGA

BS15680.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL2-RC 804 CG15009-PC 1..804 17..820 4020 100 Plus
ImpL2-RA 801 CG15009-PA 6..801 25..820 3980 100 Plus
ImpL2-RD 792 CG15009-PD 1..792 29..820 3960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:45:54
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL2-RC 989 CG15009-RC 59..863 17..821 4025 100 Plus
ImpL2-RD 2355 CG15009-RD 729..1525 25..821 3985 100 Plus
ImpL2-RB 1651 CG15009-RB 729..1525 25..821 3985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4224927..4225707 805..25 3905 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:45:53 has no hits.

BS15680.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:59:39 Download gff for BS15680.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RC 59..870 17..830 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:19 Download gff for BS15680.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RC 59..870 17..830 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:56 Download gff for BS15680.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RC 59..870 17..830 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:43 Download gff for BS15680.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RC 59..870 17..830 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:43 Download gff for BS15680.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4224927..4225711 18..805 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:19 Download gff for BS15680.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4224927..4225711 18..805 99   Minus

BS15680.pep Sequence

Translation from 16 to 819

> BS15680.pep
MEAKMNLHVCALALLLFGSIATVRGRAVDLVDDSNDVDNSIEAEEEKPRN
RAFEADWLKFTKTPPTKLQQADGATIEIVCEMMGSQVPSIQWVVGHLPRS
ELDDLDSNQVAEEAPSAIVRVRSSHIIDHVLSEARTYTCVGRTGSKTIYA
STVVHPPRSSRLTPEKTYPGAQKPRIIYTEKTHLDLMGSNIQLPCRVHAR
PRAEITWLNNENKEIVQGHRHRVLANGDLLISEIKWEDMGNYKCIARNVV
GKDTADTFVYPVLNEED*

BS15680.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL2-PC 267 CG15009-PC 1..267 1..267 1394 100 Plus
ImpL2-PA 266 CG15009-PA 3..266 4..267 1380 100 Plus
ImpL2-PD 263 CG15009-PD 1..263 5..267 1375 100 Plus
ImpL2-PB 263 CG15009-PB 1..263 5..267 1375 100 Plus
Nrg-PH 1239 CG1634-PH 341..512 60..256 152 26.7 Plus