Clone BS15681 Report

Search the DGRC for BS15681

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:156
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG31451-RB
Protein status:BS15681.pep: full length peptide match
Sequenced Size:290

Clone Sequence Records

BS15681.3prime Sequence

326 bp (326 high quality bases) assembled on 2006-12-21

> BS15681.3prime
TCCCATAAAAGGGCGCGCNAAANGAANGGNNNAGAAAGNANACCCCTTAA
GGAGGCAAGGGNGNAAAAAACGAGGNGCAGGGNNNCCNTGGNGCGGNNNC
NCNGNGNACGAAANGAGGCGATAAAAACCAAACCCCCGGCGGGCAGCGAA
NCAAGTGGCGGGGGGCAAAACGACCCAGAGAACGCCAAAANGGGAAGGCG
GGCGGGAGGAGGGCCCGGACGACGACGCCGCGCCGCCAAGGACGCCGGAG
GCNACGCAAGCAGGGAGGAAAGAGGGNCGAANCGAAAAGCAAAANCAGGA
CGACCGANAACNGCGGAAAAGGGAGG

BS15681.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG31451-PA 258 CG31451-RA 40..106 259..193 166 89.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 16:47:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23984154..23984340 294..108 449 81.8 Minus
Blast to na_te.dros performed on 2015-02-10 16:47:33 has no hits.

BS15681.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:34:02 Download gff for BS15681.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31451-PA 23..106 193..276 85   Minus
CG31451-PA 167..191 108..132 92   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed on 2007-05-10 13:12:57 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2015-02-10 18:25:25 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2015-02-10 18:25:25 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-19 18:32:31 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-19 18:32:31 has no hits.

BS15681.5prime Sequence

289 bp (289 high quality bases) assembled on 2006-12-21

> BS15681.5prime
GAAGTTATCCTTTTAGGTGATTTTGCTTTACGATTCGACCCACTATCATC
CCAGATTGCGTAGCCTCCGGCGTCCTTGGCGACGCTGACGTCGTCGTCCG
GACCATCCTCCAGCACGCCTTCCAAAATTGGCGTTCACTGGATCGATTAG
CCCCCAGCAAATTGAATCGCAGCCCGCAGGAGATTTGGTTATTATCGCCT
CATTTCGTACAAAGAGAAACCGCAACAAGGAAACACTGCACATCGTTTTT
TACACCCTTGCGTTATGTTTTTTGAAAGCTTTCTAGACC

BS15681.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG31451-PA 258 CG31451-RA 70..258 87..275 945 100 Plus
CG31451-PA 258 CG31451-RA 2..69 18..85 340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 14:55:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23984151..23984408 18..276 1245 99.6 Plus
Blast to na_te.dros performed 2015-02-10 14:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
diver2 4917 diver2 DIVER2 4917bp 818..853 80..45 108 77.8 Minus

BS15681.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:34:03 Download gff for BS15681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31451-PA 2..258 18..275 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:12:58 Download gff for BS15681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31451-PA 2..258 18..275 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:48:00 Download gff for BS15681.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23984149..23984416 14..285 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:48:00 Download gff for BS15681.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23984149..23984416 14..285 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:21:28 Download gff for BS15681.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19809871..19810138 14..285 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:21:28 Download gff for BS15681.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19809871..19810138 14..285 97   Plus

BS15681.complete Sequence

290 bp assembled on 2009-08-24

GenBank Submission: KX804102

> BS15681.complete
GAAGTTATCAGTCGACATGATTTTGCTTTACGATTCGACCCACTATCATC
CCAGATTGCGTAGCCTCCGGCGTCCTTGGCGACGCGACGTCGTCGTCCGG
ACCATCCTCCAGCACGCCTTCCAAAATTGGCGTTCACTGGATCGATTAGC
CCCCAGCAAATTGAATCGCAGCCCGCAGGAGATTTGGTTATTATCGCCTC
ATTTCGTACAAAGAGAAACCGCAACAAGGAAACACTGCACATCGTTTTTT
ACACCCTTGCGTTATGTTTTTTGAAAGCTTTCTAGACCAT

BS15681.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-28 01:31:52 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 01:31:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23984150..23984408 17..275 1295 100 Plus
Blast to na_te.dros performed 2014-11-28 01:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
diver2 4917 diver2 DIVER2 4917bp 818..853 80..45 108 77.8 Minus

BS15681.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:38 Download gff for BS15681.complete
Subject Subject Range Query Range Percent Splice Strand
CG31451-RA 805..1061 17..273 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:51 Download gff for BS15681.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23984150..23984406 17..273 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:51 Download gff for BS15681.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23984150..23984406 17..273 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:18 Download gff for BS15681.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19809872..19810128 17..273 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:18 Download gff for BS15681.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19809872..19810128 17..273 100   Plus

BS15681.pep Sequence

Translation from 16 to 273

> BS15681.pep
MILLYDSTHYHPRLRSLRRPWRRDVVVRTILQHAFQNWRSLDRLAPSKLN
RSPQEIWLLSPHFVQRETATRKHCTSFFTPLRYVF*
Sequence BS15681.pep has no blast hits.