Clone Sequence Records
BS15683.complete Sequence
995 bp assembled on 2010-02-09
GenBank Submission: KX805381
> BS15683.complete
GAAGTTATCAGTCGACATGCGATCTGTCATCGAGCCCGACCACAGCATCC
AGCTTAATGAAGCCATCTACTGCTACGATATATGCACCAATGACTTTGCC
TACAACCTAATCGCAGTGGCCTTCAGGAAACACTTGAGTCTGCTGCTCGT
TGGACTGCCGGAGGAGAGCGGCGAGTTCGGGTACACACGCCTGCAGGACA
TGGACCTGGGCGAAAAGGAGCAGCGGAGCGTGAGCGCACTGGCCTTCTCG
CCGGACACCTCGCTCAACTGCACGCCCAACAATGTGACTTTGTGCGCGGC
CAACGGCAGCCAGCTTAAACTATACCGCACCGATCTGGGCCAGTTCACCT
CGCTCCAGGTGCTCCGTGGGCATGGGGACTACGTCAACGATGTATCCTGG
GTTTGCGACGGCGAACTGCTGGCCTCCGTTAGCGATGACTTCACCTGCAG
ATTCTGGACGACGACAGGCGGCGGGGAGAATGTCATAACCTTTGGCCTGT
CCTCCGCTGGAATGTCCGTCAAGAGTCACCCCGAGGATCCCAACAAGGTT
CTTGTGGCGGAAAAGAAGGGCATCATTCATCTATACAATGTGACGCTCAA
GCAGACAGTCATCTCCGTGGAGTCGCCCAAATTCCCCCTGATGTCGGCGG
ACTGGGCCCACAGCAACCGGCTCTTCATCACCTCGCTGGCCGGCGGAGAT
GTGGTTACCTGGGACCTGAACCGACCCTATGTGCCCGCGGATGTCAAGCA
GGTCCACGAGGATTGCGGCCGGGTGGTGCGCTTCGCGCCAGGCAGCTCCG
AGATGGTTATCGCCATGGTCATCGGGCTGACTCTCAAAGTGTTCGCGGCC
AAGTCGACCGTTCCTCTGCTGGAGGCCTCCCTGAAATCCTATGGGGGAAT
GGCCTGGCACCAGCGATTGCCGTACATTAGTGCGGTTTCCGATAGGAAAC
TGCTCTTCTGGAAAGTGCAAATGAAGTAAAAGCTTTCTAGACCAT
BS15683.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:00:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup37-RB | 963 | CG11875-PB | 1..963 | 17..979 | 4815 | 100 | Plus |
Nup37-RA | 963 | CG11875-PA | 1..963 | 17..979 | 4815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:00:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup37-RB | 1139 | CG11875-RB | 125..1087 | 17..979 | 4815 | 100 | Plus |
Nup37-RA | 1107 | CG11875-RA | 93..1055 | 17..979 | 4815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:00:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25248172..25248582 | 160..570 | 2055 | 100 | Plus |
3R | 32079331 | 3R | 25248638..25249048 | 569..979 | 2055 | 100 | Plus |
3R | 32079331 | 3R | 25247963..25248107 | 17..161 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:00:42 has no hits.
BS15683.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:53 Download gff for
BS15683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11875-RA | 86..1046 | 17..977 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:13 Download gff for
BS15683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup37-RA | 93..1053 | 17..977 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:03:09 Download gff for
BS15683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11875-RA | 86..1046 | 17..977 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:13 Download gff for
BS15683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup37-RA | 93..1053 | 17..977 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:13 Download gff for
BS15683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25247963..25248106 | 17..160 | 100 | -> | Plus |
3R | 25248173..25248581 | 161..569 | 100 | -> | Plus |
3R | 25248639..25249046 | 570..977 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:13 Download gff for
BS15683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21073685..21073828 | 17..160 | 100 | -> | Plus |
arm_3R | 21073895..21074303 | 161..569 | 100 | -> | Plus |
arm_3R | 21074361..21074768 | 570..977 | 100 | | Plus |
BS15683.3prime Sequence
906 bp (774 high quality bases) assembled on 2006-12-21
> BS15683.3prime
TCCCATAGGGGGCGCGCCAAACGAATGGTCTAGAAAGCTTTTACCTTTTT
TGCACTTTCCAGAAGAGCAGTTTCCTATCGGAAACCGCACTAATGTACGG
CAATCGCTGGTGCCAGGCCATTCCCCCATAGGATTTCAGGGAGGCCTCCA
GCAGAGGAACGGTCGACTTGGCCGCGAACACTTTGAGAGTCAGCCCGATG
ACCATGGCGATAACCATCTCGGAGCTGCCTGGCGCGAAGCGCACCACCCG
GCCGCAATCCTCGTGGACCTGCTTGACATCCGCGGGCACATAGGGTCGGT
TCAGGTCCCAGGTAACCACATCTCCGCCGGCCAGCGAGGTGATGAAGAGC
CGGTTGCTGTGGGCCCAGTCCGCCGACATCAGGGGGAATTTGGGCGACTC
CACGGAGATGACTGTCTGCTTGAGCGTCACATTGTATAGATGAATGATGC
CCTTCTTTTCCGCCACAAGAACCTTGTTGGGATCCTCGGGGTGACTCTTG
ACGGACATTCCAGCGGAGGACAGGCCAAAGGTTATGACATTCTCCCCGCC
GCCTGTCGTCGTCCAGAATCTGCAGGTGAAGTCATCGCTAACGGAGGCCA
GCAGTTCGCCGTCGCAAACCCAGGATACATCGTTGACGTAGTCCCCATGC
CCACGGAGCACCTGGAGCGAGGTGAACTGGCCCAGATCGGTGCGGTATAG
TTTAAGCTGGCTGCCGTTGGCCGCGCACAAAGTCACATTGTTGGGCGTGC
AGTTGAGCGAGGTGTCCGGCGAGAAGGCCAGTGCGCTCACGCTCCGCTGC
TCCTTTTCGCCCAGGTCCATGTCCTGCAGGCGTGTGTACCCGAACTCGCC
GCTCTCCTCCGGCAGTCCAACGAGCAGCAGACTCAAGTGTTTCCTGAAGG
CCACTG
BS15683.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11875-PA | 963 | CG11875-RA | 98..955 | 906..49 | 4290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:22:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup37-RB | 1139 | CG11875-RB | 222..1079 | 906..49 | 4290 | 100 | Minus |
Nup37-RA | 1107 | CG11875-RA | 190..1047 | 906..49 | 4290 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:22:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25248172..25248582 | 860..450 | 2055 | 100 | Minus |
3R | 32079331 | 3R | 25248638..25249040 | 451..49 | 2015 | 100 | Minus |
3R | 32079331 | 3R | 25248060..25248107 | 906..859 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:22:03 has no hits.
BS15683.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:34:06 Download gff for
BS15683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11875-PA | 98..963 | 41..906 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:13:02 Download gff for
BS15683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11875-PA | 98..963 | 41..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 03:46:24 Download gff for
BS15683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup37-RA | 190..1055 | 41..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:57:31 Download gff for
BS15683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup37-RA | 190..1055 | 41..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:57:31 Download gff for
BS15683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25248173..25248581 | 451..859 | 100 | -> | Minus |
3R | 25248060..25248106 | 860..906 | 100 | -> | Minus |
3R | 25248639..25249048 | 41..450 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 03:46:24 Download gff for
BS15683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21073782..21073828 | 860..906 | 100 | -> | Minus |
arm_3R | 21073895..21074303 | 451..859 | 100 | -> | Minus |
arm_3R | 21074361..21074770 | 41..450 | 99 | | Minus |
BS15683.5prime Sequence
869 bp (708 high quality bases) assembled on 2006-12-21
> BS15683.5prime
GAAGTTATCCCTCGACATGCGATCTGTCATCGAGCCCGACCACAGCATCC
AGCTTAATGAAGCCATCTACTGCTACGATATATGCACCAATGACTTTGCC
TACAACCTAATCGCAGTGGCCTTCAGGAAACACTTGAGTCTGCTGCTCGT
TGGACTGCCGGAGGAGAGCGGCGAGTTCGGGTACACACGCCTGCAGGACA
TGGACCTGGGCGAAAAGGAGCAGCGGAGCGTGAGCGCACTGGCCTTCTCG
CCGGACACCTCGCTCAACTGCACGCCCAACAATGTGACTTTGTGCGCGGC
CAACGGCAGCCAGCTTAAACTATACCGCACCGATCTGGGCCAGTTCACCT
CGCTCCAGGTGCTCCGTGGGCATGGGGACTACGTCAACGATGTATCCTGG
GTTTGCGACGGCGAACTGCTGGCCTCCGTTAGCGATGACTTCACCTGCAG
ATTCTGGACGACGACAGGCGGCGGGGAGAATGTCATAACCTTTGGCCTGT
CCTCCGCTGGAATGTCCGTCAAGAGTCACCCCGAGGATCCCAACAAGGTT
CTTGTGGCGGAAAAGAAGGGCATCATTCATCTATACAATGTGACGCTCAA
GCAGACAGTCATCTCCGTGGAGTCGCCCAAATTCCCCCTGATGTCGGCGG
ACTGGGCCCACAGCAACCGGCTCTTCATCACCTCGCTGGCCGGCGGAGAT
GTGGTTACCTGGGACCTGAACCGACCCTATGTGCCCGCGGATGTCAAGCA
GGTCCACGAGGATTGCGGCCGGGTGGTGCGCTTCGCGCCAGGCAGCTCCG
AGATGGTTATCGCCATGGTCATCGGGCTGACTCTCAAAGTGTTCGCGGGC
AAGTCGACCGTTCCTCTGC
BS15683.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11875-PA | 963 | CG11875-RA | 1..853 | 17..869 | 4240 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:18:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup37-RB | 1139 | CG11875-RB | 125..977 | 17..869 | 4250 | 99.9 | Plus |
Nup37-RA | 1107 | CG11875-RA | 93..945 | 17..869 | 4250 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:18:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25248172..25248582 | 160..570 | 2055 | 100 | Plus |
3R | 32079331 | 3R | 25248638..25248938 | 569..869 | 1490 | 99.7 | Plus |
3R | 32079331 | 3R | 25247963..25248107 | 17..161 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:18:06 has no hits.
BS15683.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:34:08 Download gff for
BS15683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11875-PA | 1..853 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:13:04 Download gff for
BS15683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11875-PA | 1..853 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 13:14:12 Download gff for
BS15683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup37-RA | 93..945 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:43:29 Download gff for
BS15683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup37-RA | 93..945 | 17..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:43:29 Download gff for
BS15683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25247963..25248106 | 17..160 | 100 | -> | Plus |
3R | 25248173..25248581 | 161..569 | 100 | -> | Plus |
3R | 25248639..25248938 | 570..869 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 13:14:12 Download gff for
BS15683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21073685..21073828 | 17..160 | 100 | -> | Plus |
arm_3R | 21073895..21074303 | 161..569 | 100 | -> | Plus |
arm_3R | 21074361..21074660 | 570..869 | 99 | | Plus |
BS15683.pep Sequence
Translation from 16 to 978
> BS15683.pep
MRSVIEPDHSIQLNEAIYCYDICTNDFAYNLIAVAFRKHLSLLLVGLPEE
SGEFGYTRLQDMDLGEKEQRSVSALAFSPDTSLNCTPNNVTLCAANGSQL
KLYRTDLGQFTSLQVLRGHGDYVNDVSWVCDGELLASVSDDFTCRFWTTT
GGGENVITFGLSSAGMSVKSHPEDPNKVLVAEKKGIIHLYNVTLKQTVIS
VESPKFPLMSADWAHSNRLFITSLAGGDVVTWDLNRPYVPADVKQVHEDC
GRVVRFAPGSSEMVIAMVIGLTLKVFAAKSTVPLLEASLKSYGGMAWHQR
LPYISAVSDRKLLFWKVQMK*
BS15683.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup37-PB | 320 | CG11875-PB | 1..320 | 1..320 | 1672 | 100 | Plus |
Nup37-PA | 320 | CG11875-PA | 1..320 | 1..320 | 1672 | 100 | Plus |
CG10931-PA | 345 | CG10931-PA | 60..254 | 81..279 | 174 | 28.6 | Plus |