Clone BS15683 Report

Search the DGRC for BS15683

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:156
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptNup37-RA
Protein status:BS15683.pep: full length peptide match
Sequenced Size:995

Clone Sequence Records

BS15683.complete Sequence

995 bp assembled on 2010-02-09

GenBank Submission: KX805381

> BS15683.complete
GAAGTTATCAGTCGACATGCGATCTGTCATCGAGCCCGACCACAGCATCC
AGCTTAATGAAGCCATCTACTGCTACGATATATGCACCAATGACTTTGCC
TACAACCTAATCGCAGTGGCCTTCAGGAAACACTTGAGTCTGCTGCTCGT
TGGACTGCCGGAGGAGAGCGGCGAGTTCGGGTACACACGCCTGCAGGACA
TGGACCTGGGCGAAAAGGAGCAGCGGAGCGTGAGCGCACTGGCCTTCTCG
CCGGACACCTCGCTCAACTGCACGCCCAACAATGTGACTTTGTGCGCGGC
CAACGGCAGCCAGCTTAAACTATACCGCACCGATCTGGGCCAGTTCACCT
CGCTCCAGGTGCTCCGTGGGCATGGGGACTACGTCAACGATGTATCCTGG
GTTTGCGACGGCGAACTGCTGGCCTCCGTTAGCGATGACTTCACCTGCAG
ATTCTGGACGACGACAGGCGGCGGGGAGAATGTCATAACCTTTGGCCTGT
CCTCCGCTGGAATGTCCGTCAAGAGTCACCCCGAGGATCCCAACAAGGTT
CTTGTGGCGGAAAAGAAGGGCATCATTCATCTATACAATGTGACGCTCAA
GCAGACAGTCATCTCCGTGGAGTCGCCCAAATTCCCCCTGATGTCGGCGG
ACTGGGCCCACAGCAACCGGCTCTTCATCACCTCGCTGGCCGGCGGAGAT
GTGGTTACCTGGGACCTGAACCGACCCTATGTGCCCGCGGATGTCAAGCA
GGTCCACGAGGATTGCGGCCGGGTGGTGCGCTTCGCGCCAGGCAGCTCCG
AGATGGTTATCGCCATGGTCATCGGGCTGACTCTCAAAGTGTTCGCGGCC
AAGTCGACCGTTCCTCTGCTGGAGGCCTCCCTGAAATCCTATGGGGGAAT
GGCCTGGCACCAGCGATTGCCGTACATTAGTGCGGTTTCCGATAGGAAAC
TGCTCTTCTGGAAAGTGCAAATGAAGTAAAAGCTTTCTAGACCAT

BS15683.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
Nup37-RB 963 CG11875-PB 1..963 17..979 4815 100 Plus
Nup37-RA 963 CG11875-PA 1..963 17..979 4815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
Nup37-RB 1139 CG11875-RB 125..1087 17..979 4815 100 Plus
Nup37-RA 1107 CG11875-RA 93..1055 17..979 4815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25248172..25248582 160..570 2055 100 Plus
3R 32079331 3R 25248638..25249048 569..979 2055 100 Plus
3R 32079331 3R 25247963..25248107 17..161 725 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:00:42 has no hits.

BS15683.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:53 Download gff for BS15683.complete
Subject Subject Range Query Range Percent Splice Strand
CG11875-RA 86..1046 17..977 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:13 Download gff for BS15683.complete
Subject Subject Range Query Range Percent Splice Strand
Nup37-RA 93..1053 17..977 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:03:09 Download gff for BS15683.complete
Subject Subject Range Query Range Percent Splice Strand
CG11875-RA 86..1046 17..977 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:13 Download gff for BS15683.complete
Subject Subject Range Query Range Percent Splice Strand
Nup37-RA 93..1053 17..977 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:13 Download gff for BS15683.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25247963..25248106 17..160 100 -> Plus
3R 25248173..25248581 161..569 100 -> Plus
3R 25248639..25249046 570..977 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:13 Download gff for BS15683.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21073685..21073828 17..160 100 -> Plus
arm_3R 21073895..21074303 161..569 100 -> Plus
arm_3R 21074361..21074768 570..977 100   Plus

BS15683.3prime Sequence

906 bp (774 high quality bases) assembled on 2006-12-21

> BS15683.3prime
TCCCATAGGGGGCGCGCCAAACGAATGGTCTAGAAAGCTTTTACCTTTTT
TGCACTTTCCAGAAGAGCAGTTTCCTATCGGAAACCGCACTAATGTACGG
CAATCGCTGGTGCCAGGCCATTCCCCCATAGGATTTCAGGGAGGCCTCCA
GCAGAGGAACGGTCGACTTGGCCGCGAACACTTTGAGAGTCAGCCCGATG
ACCATGGCGATAACCATCTCGGAGCTGCCTGGCGCGAAGCGCACCACCCG
GCCGCAATCCTCGTGGACCTGCTTGACATCCGCGGGCACATAGGGTCGGT
TCAGGTCCCAGGTAACCACATCTCCGCCGGCCAGCGAGGTGATGAAGAGC
CGGTTGCTGTGGGCCCAGTCCGCCGACATCAGGGGGAATTTGGGCGACTC
CACGGAGATGACTGTCTGCTTGAGCGTCACATTGTATAGATGAATGATGC
CCTTCTTTTCCGCCACAAGAACCTTGTTGGGATCCTCGGGGTGACTCTTG
ACGGACATTCCAGCGGAGGACAGGCCAAAGGTTATGACATTCTCCCCGCC
GCCTGTCGTCGTCCAGAATCTGCAGGTGAAGTCATCGCTAACGGAGGCCA
GCAGTTCGCCGTCGCAAACCCAGGATACATCGTTGACGTAGTCCCCATGC
CCACGGAGCACCTGGAGCGAGGTGAACTGGCCCAGATCGGTGCGGTATAG
TTTAAGCTGGCTGCCGTTGGCCGCGCACAAAGTCACATTGTTGGGCGTGC
AGTTGAGCGAGGTGTCCGGCGAGAAGGCCAGTGCGCTCACGCTCCGCTGC
TCCTTTTCGCCCAGGTCCATGTCCTGCAGGCGTGTGTACCCGAACTCGCC
GCTCTCCTCCGGCAGTCCAACGAGCAGCAGACTCAAGTGTTTCCTGAAGG
CCACTG

BS15683.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG11875-PA 963 CG11875-RA 98..955 906..49 4290 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
Nup37-RB 1139 CG11875-RB 222..1079 906..49 4290 100 Minus
Nup37-RA 1107 CG11875-RA 190..1047 906..49 4290 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25248172..25248582 860..450 2055 100 Minus
3R 32079331 3R 25248638..25249040 451..49 2015 100 Minus
3R 32079331 3R 25248060..25248107 906..859 240 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:22:03 has no hits.

BS15683.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:34:06 Download gff for BS15683.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11875-PA 98..963 41..906 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:13:02 Download gff for BS15683.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11875-PA 98..963 41..906 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 03:46:24 Download gff for BS15683.3prime
Subject Subject Range Query Range Percent Splice Strand
Nup37-RA 190..1055 41..906 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:57:31 Download gff for BS15683.3prime
Subject Subject Range Query Range Percent Splice Strand
Nup37-RA 190..1055 41..906 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:57:31 Download gff for BS15683.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25248173..25248581 451..859 100 -> Minus
3R 25248060..25248106 860..906 100 -> Minus
3R 25248639..25249048 41..450 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 03:46:24 Download gff for BS15683.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21073782..21073828 860..906 100 -> Minus
arm_3R 21073895..21074303 451..859 100 -> Minus
arm_3R 21074361..21074770 41..450 99   Minus

BS15683.5prime Sequence

869 bp (708 high quality bases) assembled on 2006-12-21

> BS15683.5prime
GAAGTTATCCCTCGACATGCGATCTGTCATCGAGCCCGACCACAGCATCC
AGCTTAATGAAGCCATCTACTGCTACGATATATGCACCAATGACTTTGCC
TACAACCTAATCGCAGTGGCCTTCAGGAAACACTTGAGTCTGCTGCTCGT
TGGACTGCCGGAGGAGAGCGGCGAGTTCGGGTACACACGCCTGCAGGACA
TGGACCTGGGCGAAAAGGAGCAGCGGAGCGTGAGCGCACTGGCCTTCTCG
CCGGACACCTCGCTCAACTGCACGCCCAACAATGTGACTTTGTGCGCGGC
CAACGGCAGCCAGCTTAAACTATACCGCACCGATCTGGGCCAGTTCACCT
CGCTCCAGGTGCTCCGTGGGCATGGGGACTACGTCAACGATGTATCCTGG
GTTTGCGACGGCGAACTGCTGGCCTCCGTTAGCGATGACTTCACCTGCAG
ATTCTGGACGACGACAGGCGGCGGGGAGAATGTCATAACCTTTGGCCTGT
CCTCCGCTGGAATGTCCGTCAAGAGTCACCCCGAGGATCCCAACAAGGTT
CTTGTGGCGGAAAAGAAGGGCATCATTCATCTATACAATGTGACGCTCAA
GCAGACAGTCATCTCCGTGGAGTCGCCCAAATTCCCCCTGATGTCGGCGG
ACTGGGCCCACAGCAACCGGCTCTTCATCACCTCGCTGGCCGGCGGAGAT
GTGGTTACCTGGGACCTGAACCGACCCTATGTGCCCGCGGATGTCAAGCA
GGTCCACGAGGATTGCGGCCGGGTGGTGCGCTTCGCGCCAGGCAGCTCCG
AGATGGTTATCGCCATGGTCATCGGGCTGACTCTCAAAGTGTTCGCGGGC
AAGTCGACCGTTCCTCTGC

BS15683.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG11875-PA 963 CG11875-RA 1..853 17..869 4240 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
Nup37-RB 1139 CG11875-RB 125..977 17..869 4250 99.9 Plus
Nup37-RA 1107 CG11875-RA 93..945 17..869 4250 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:18:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25248172..25248582 160..570 2055 100 Plus
3R 32079331 3R 25248638..25248938 569..869 1490 99.7 Plus
3R 32079331 3R 25247963..25248107 17..161 725 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:18:06 has no hits.

BS15683.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:34:08 Download gff for BS15683.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11875-PA 1..853 17..869 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:13:04 Download gff for BS15683.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11875-PA 1..853 17..869 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 13:14:12 Download gff for BS15683.5prime
Subject Subject Range Query Range Percent Splice Strand
Nup37-RA 93..945 17..869 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:43:29 Download gff for BS15683.5prime
Subject Subject Range Query Range Percent Splice Strand
Nup37-RA 93..945 17..869 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:43:29 Download gff for BS15683.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25247963..25248106 17..160 100 -> Plus
3R 25248173..25248581 161..569 100 -> Plus
3R 25248639..25248938 570..869 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 13:14:12 Download gff for BS15683.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21073685..21073828 17..160 100 -> Plus
arm_3R 21073895..21074303 161..569 100 -> Plus
arm_3R 21074361..21074660 570..869 99   Plus

BS15683.pep Sequence

Translation from 16 to 978

> BS15683.pep
MRSVIEPDHSIQLNEAIYCYDICTNDFAYNLIAVAFRKHLSLLLVGLPEE
SGEFGYTRLQDMDLGEKEQRSVSALAFSPDTSLNCTPNNVTLCAANGSQL
KLYRTDLGQFTSLQVLRGHGDYVNDVSWVCDGELLASVSDDFTCRFWTTT
GGGENVITFGLSSAGMSVKSHPEDPNKVLVAEKKGIIHLYNVTLKQTVIS
VESPKFPLMSADWAHSNRLFITSLAGGDVVTWDLNRPYVPADVKQVHEDC
GRVVRFAPGSSEMVIAMVIGLTLKVFAAKSTVPLLEASLKSYGGMAWHQR
LPYISAVSDRKLLFWKVQMK*

BS15683.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
Nup37-PB 320 CG11875-PB 1..320 1..320 1672 100 Plus
Nup37-PA 320 CG11875-PA 1..320 1..320 1672 100 Plus
CG10931-PA 345 CG10931-PA 60..254 81..279 174 28.6 Plus