BS15693.complete Sequence
983 bp assembled on 2010-02-09
GenBank Submission: KX802873
> BS15693.complete
GAAGTTATCAGTCGACATGTTTCTGGCCAAAAGTTCATCAATACTTCGCC
CGCAGCTTCTTAATGAGGTGAAGGGACTAGTGAAGTCACAATTTCTGGCT
CTGTCACAGGTCGACCGACGCTTTGCCCACTCGGACGATAGGTGCGCCAA
TAAGAAATCCAGGAAGTGCGAGCAGAGCCCACCCAAGGGTGTAGGTTTGC
CCCCCCGGGATCGAAGACATTCTCATACGGATGGCGTCAGTGATAAGTGC
GCGAAGAACAAAAAAGATAAGCGGGAGTGCAAGAAGTTTGAGTCCGAGAA
TGCCAAAAAGCCGGAATGCAAACCGCCCGTTGTCCGTGCTCCAAAATACT
ACAAGCAGCTAAAACCGTGCAAGACCGACAAGGAGCTCTCCGAGCTGCAT
CCCAAGTATCTGGGTGTATGGGGTCGTTGCGACATACCCTACAAGCCAGA
GCCCGATTGCACCGATCCCTGTGATTTGGCCGTACGTTTGGATGACAAGT
ACTACAAGCCCAGCAAATCGCTGGACCGCGAATTCGACCAGTACTGGGTG
GAGTGCTTCTTCCGGAAGCAGAAACGCTGCTGCCGCAAGGTTGCTCCTGA
GCGCACTTACCGCGTGTTAACCAAAAAGTGCGTTTCCGCTCCGAAGAAGG
CGCCTTGCTTCACCGTCAATCCCATGCCATGCAAACAAGAGGCCAAAACC
AGCCCCTGTCCCAAGATCAAGCTATGCGAGTGTCCGCCGGCAGCTGCCAT
TAACAATTGTAAACTGGTGCGAAGACACACAAGATGCCGGCGTCGCGCAT
GCCAGTATCCCAGCTTCTCGGAGTGCCAGCACGAGGAGCTGAACACCAGC
AGACCCATCGAGTGCCGCTGCCTGGAGGTGCCGCCGCTTTGCCTTGTCTA
TCGACACGCTCTCCTCAACCGCCGACTTCCCTGTGAGCCTCTGAAGCCGC
GCAATGAATCGTGTTAAAAGCTTTCTAGACCAT
BS15693.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:31:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12860-RA | 951 | CG12860-PA | 1..951 | 17..967 | 4755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:31:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12860-RA | 1177 | CG12860-RA | 127..1078 | 17..968 | 4760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:31:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14665740..14666691 | 968..17 | 4760 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 04:31:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc | 4725 | Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). | 2910..2962 | 671..724 | 114 | 70.4 | Plus |
BS15693.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:58 Download gff for
BS15693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12860-RA | 133..1075 | 23..965 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:04 Download gff for
BS15693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12860-RA | 133..1075 | 23..965 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:35 Download gff for
BS15693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12860-RA | 133..1075 | 23..965 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:50 Download gff for
BS15693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12860-RA | 133..1075 | 23..965 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:50 Download gff for
BS15693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14665743..14666685 | 23..965 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:04 Download gff for
BS15693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10553248..10554190 | 23..965 | 100 | | Minus |
BS15693.3prime Sequence
696 bp (695 high quality bases) assembled on 2006-12-21
> BS15693.3prime
TCCCTAAAGGGGCGCGCCAAANGAAGGGNCNAGAAAGNTTTTCCTTGAGG
GGGTGCGCGGCTNCAGAGGCNCACAGGGAAGNCGGCGGNGGAGGAGAGCG
GGGCGANAGACAAGGCAAAGCGGCGGCACCCCCAGGCAGCGGCACCCGAG
GGGNCGGCGGGGGGCCAGCNCCCCGCGCNGGCACACCGAGAAGCGGGGAN
ACGGGCAGGCGCGACGCCGGCANCNGGGGNGCCNCCGCACCAGNNAACAA
GGGGNAAGGGCAGCGGCCGGCGGACACNCGCANAGCGGGANCGGGGGACA
GGGGCGGGNNNNGGCCNCNGGNNNGCAGGGCAGGGGAANGACGGNGAAGC
AAGGCGCCCCCNNCGGAGCGGAAACGCACNNNNGGGNAAACACGCGGNAA
GGGCGCNCAGGAGCAACCNGGCGGCAGCAGCGNNCCGGCAACCGGAAGAA
GCACNCCACCCAGNACGGGNCGAANNCGCGGNCCAGCGANNNGCNGGGCN
GGNAGNACNNGNCANCCAAACGNACGGCCAAANCACAGGGAACGGGGCAA
NCGGGCNCGGGCNGGNAGGGNANGNCGCAACGACCCCANACACCCAGAAA
CNNGGGAAGCAGCNCGGAGAGCNCCNGGNCGGNCNNGCACGGNNNNAGCG
GCNGGNAGNANNNNGGAGCACGGACAACGGGCGNGCGGCANNCCGG
BS15693.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12860-PA | 951 | CG12860-RA | 846..937 | 145..54 | 265 | 90.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 02:51:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12860-RA | 1177 | CG12860-RA | 434..1063 | 683..54 | 1316 | 76.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 02:51:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14665755..14666384 | 54..683 | 1316 | 76.8 | Plus |
Blast to na_te.dros performed on 2015-01-30 02:51:54 has no hits.
BS15693.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:34:28 Download gff for
BS15693.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12860-PA | 301..326 | 665..690 | 85 | | Minus |
| CG12860-PA | 393..475 | 516..598 | 83 | | Minus |
| CG12860-PA | 528..645 | 346..463 | 80 | | Minus |
| CG12860-PA | 714..782 | 209..277 | 75 | | Minus |
| CG12860-PA | 846..937 | 54..145 | 90 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed on 2007-05-10 13:13:33 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-05 05:29:06 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2015-01-30 04:05:34 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2015-01-30 04:05:34 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 05:29:06 has no hits.
BS15693.5prime Sequence
896 bp (771 high quality bases) assembled on 2006-12-21
> BS15693.5prime
GAAGTTATCCGTTGAGATGTTTCTGGNCAAAAGTTCATCAATACTTCGCC
CGCAGCTTCTTAATGAGGTGAAGGGACTAGTGAAGTCACAATTTCTGGCT
CTGTCACAGGTCGACCGACGCTTTGCCCACTCGGACGATAGGTGCGCCAA
TAAGAAATCCAGGAAGTGCGAGCAGAGCCCACCCAAGGGTGTAGGTTTGC
CCCCCCGGGATCGAAGACATTCTCATACGGATGGCGTCAGTGATAAGTGC
GCGAAGAACAAAAAAGATAAGCGGGAGTGCAAGAAGTTTGAGTCCGAGAA
TGCCAAAAAGCCGGAATGCAAACCGCCCGTTGTCCGTGCTCCAAAATACT
ACAAGCAGCTAAAACCGTGCAAGACCGACAAGGAGCTCTCCGAGCTGCAT
CCCAAGTATCTGGGTGTATGGGGTCGTTGCGACATACCCTACAAGCCAGA
GCCCGATTGCACCGATCCCTGTGATTTGGCCGTACGTTTGGATGACAAGT
ACTACAAGCCCAGCAAATCGCTGGACCGCGAATTCGACCAGTACTGGGTG
GAGTGCTTCTTCCGGAAGCAGAAACGCTGCTGCCGCAAGGTTGCTCCTGA
GCGCACTTACCGCGTGTTAACCAAAAAGTGCGTTTCCGCTCCGAAGAAGG
CGCCTTGCTTCACCGTCAATCCCATGCCATGCAAACAAGAGGCCAAAACC
AGCCCCTGTCCCAAGATCAAGCTATGCGAGTGTCCGCCGGCAGCTGCCAT
TAACATTTGTAAACTGGTGCGAAGACACACAAGATGCCGGCGTCGCGCAT
GCCAGTATCCCAGCTTCTCGGAGTGCCAGCACGAGGAGCTGAACACCAGC
AGACCCATCGAGTGCGGCTGCCTGAAGGTGCCGCCGCTTTGCCTTG
BS15693.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:25:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12860-PA | 951 | CG12860-RA | 1..880 | 17..896 | 4306 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:53:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12860-RA | 1177 | CG12860-RA | 127..1006 | 17..896 | 4344 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:53:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14665812..14666691 | 896..17 | 4344 | 99.5 | Minus |
Blast to na_te.dros performed 2015-02-02 13:53:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc | 4725 | Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). | 2910..2962 | 671..724 | 114 | 70.4 | Plus |
BS15693.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:34:29 Download gff for
BS15693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12860-PA | 1..880 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:13:34 Download gff for
BS15693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12860-PA | 1..880 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:11:48 Download gff for
BS15693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12860-RA | 116..1006 | 8..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:49:39 Download gff for
BS15693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12860-RA | 116..1006 | 8..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:49:39 Download gff for
BS15693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14665812..14666702 | 8..896 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:11:48 Download gff for
BS15693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10553317..10554207 | 8..896 | 99 | | Minus |
BS15693.pep Sequence
Translation from 16 to 966
> BS15693.pep
MFLAKSSSILRPQLLNEVKGLVKSQFLALSQVDRRFAHSDDRCANKKSRK
CEQSPPKGVGLPPRDRRHSHTDGVSDKCAKNKKDKRECKKFESENAKKPE
CKPPVVRAPKYYKQLKPCKTDKELSELHPKYLGVWGRCDIPYKPEPDCTD
PCDLAVRLDDKYYKPSKSLDREFDQYWVECFFRKQKRCCRKVAPERTYRV
LTKKCVSAPKKAPCFTVNPMPCKQEAKTSPCPKIKLCECPPAAAINNCKL
VRRHTRCRRRACQYPSFSECQHEELNTSRPIECRCLEVPPLCLVYRHALL
NRRLPCEPLKPRNESC*
BS15693.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12860-PA | 316 | CG12860-PA | 1..316 | 1..316 | 1761 | 100 | Plus |
| CG2127-PB | 289 | CG2127-PB | 43..276 | 66..304 | 274 | 31 | Plus |
| CG2127-PA | 305 | CG2127-PA | 59..292 | 66..304 | 274 | 31 | Plus |
| CG8701-PA | 246 | CG8701-PA | 77..239 | 143..311 | 216 | 32.6 | Plus |
| boly-PA | 255 | CG30362-PA | 77..249 | 118..297 | 205 | 31.1 | Plus |
