Clone Sequence Records
BS15695.3prime Sequence
774 bp (774 high quality bases) assembled on 2006-12-21
> BS15695.3prime
ATGGTCTAGAAAGCTTTTACTGTCGGGCGTTGATGATGTCCACGAACTCG
GGCTTCAGGGAGGCGCCTCCGACCAGGAAGCCATCTATGTCGGGCTTCTT
GGCCAGCTCCTTGGCGTTGGCGGCGGTCACGGATCCACCGTACTGGATGC
GCAGGCTGGCGGACACCTCCTTGGAGATGTTGTCGCTCAGCCACTGGCGC
AGGAAGGCGTGGACCTCTTGAGCCTGATCGGGTGTGGCGGTCTGGCCGGT
GCCAATGGCCCAGACGGGCTCGTAGGCCACCACCACGTTCTTCCAGTCCT
TGATCTTCTGGGCGTAGGCGCACATTTGGCGGGCCACCACCTCGTTGGTC
TTGCCGGCCTCGCGCTCCTCCAGGGTCTCACCAATGCAGGCGATGACCTT
GAGGCCCTCGGCCAGGGCGTGCTCGGCCTTCTCGGCGATCAGGGCGTCCG
ATTCGCCGAAGATGGCGCGACGCTCCGAGTGTCCCAGGATCACCCAGTCG
GCGCCGATGTCCTTCAGCATCGCAGGGGAGATCTCGCCGGTGAATGCGCC
CTTGGCCACCTTGTAGGCATTCTGGCCGGCCAGACCCAGCTCGCAGGGCA
GCAGGTTGCGGGCGTACATCAGGTAGATGGCCGGGCAGCCGATGACCACC
TCCGTGTTGGGGTCGAGGGCGGCCGAGCTCAGGGTCTTGGCGATCTCGGC
GATGGACTTCTGGTCGCCGTTCATCTTCCAGTTGCCTCCCACGCAGAACT
TTCGGCTCATGTCGACTGATAACT
BS15695.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2171-PA | 1047 | Tpi-RA | 302..1047 | 762..17 | 3705 | 99.8 | Minus |
CG2171-PB | 744 | Tpi-RB | 1..744 | 760..17 | 3695 | 99.8 | Minus |
CG2171-PC | 744 | Tpi-RC | 1..744 | 760..17 | 3695 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 03:01:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tpi-RC | 1268 | CG2171-RC | 262..1007 | 762..17 | 3715 | 99.9 | Minus |
Tpi-RB | 1112 | CG2171-RB | 106..851 | 762..17 | 3715 | 99.9 | Minus |
Tpi-RA | 1374 | CG2171-RA | 368..1113 | 762..17 | 3715 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 03:01:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30133509..30134048 | 223..762 | 2700 | 100 | Plus |
3R | 32079331 | 3R | 30133242..30133451 | 17..226 | 1035 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-01-30 03:01:41 has no hits.
BS15695.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:34:33 Download gff for
BS15695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpi-PA | 297..1047 | 17..768 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:13:38 Download gff for
BS15695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2171-PA | 297..1047 | 17..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:29:30 Download gff for
BS15695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpi-RA | 363..1115 | 13..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:06:50 Download gff for
BS15695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpi-RA | 363..1115 | 13..768 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:06:50 Download gff for
BS15695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30133240..30133448 | 13..223 | 98 | <- | Plus |
3R | 30133510..30134053 | 224..768 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:29:30 Download gff for
BS15695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25958962..25959170 | 13..223 | 98 | <- | Plus |
arm_3R | 25959232..25959775 | 224..768 | 99 | | Plus |
BS15695.5prime Sequence
774 bp (774 high quality bases) assembled on 2006-12-21
> BS15695.5prime
GAAGTTATCCGTCGACATGAGCCGAAAGTTCTGCGTGGGAGGCAACTGGA
AGATGAACGGCGACCAGAAGTCCATCGCCGAGATCGCCAAGACCCTGAGC
TCGGCCGCCCTCGACCCCAACACGGAGGTGGTCATCGGCTGCCCGGCCAT
CTACCTGATGTACGCCCGCAACCTGCTGCCCTGCGAGCTGGGTCTGGCCG
GCCAGAATGCCTACAAGGTGGCCAAGGGCGCATTCACCGGCGAGATCTCC
CCTGCGATGCTGAAGGACATCGGCGCCGACTGGGTGATCCTGGGACACTC
GGAGCGTCGCGCCATCTTCGGCGAATCGGACGCCCTGATCGCCGAGAAGG
CCGAGCACGCCCTGGCCGAGGGCCTCAAGGTCATCGCCTGCATTGGTGAG
ACCCTGGAGGAGCGCGAGGCCGGCAAGACCAACGAGGTGGTGGCCCGCCA
AATGTGCGCCTACGCCCAGAAGATCAAGGACTGGAAGAACGTGGTGGTGG
CCTACGAGCCCGTCTGGGCCATTGGCACCGGCCAGACCGCCACACCCGAT
CAGGCTCAAGAGGTCCACGCCTTCCTGCGCCAGTGGCTGAGCGACAACAT
CTCCAAGGAGGTGTCCGCCAGCCTGCGCATCCAGTACGGTGGATCCGTGA
CCGCCGCCAACGCCAAGGAGCTGGCCAAGAAGCCCGACATAGATGGCTTC
CTGGTCGGAGGCGCCTCCCTGAAGCCCGAGTTCGTGGACATCATCAACGC
CCGGCAGTAAAAGCTTTCTAGACC
BS15695.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2171-PA | 1047 | Tpi-RA | 302..1047 | 15..760 | 3730 | 100 | Plus |
CG2171-PB | 744 | Tpi-RB | 1..744 | 17..760 | 3720 | 100 | Plus |
CG2171-PC | 744 | Tpi-RC | 1..744 | 17..760 | 3720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 03:58:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tpi-RC | 1268 | CG2171-RC | 262..1007 | 15..760 | 3730 | 100 | Plus |
Tpi-RB | 1112 | CG2171-RB | 106..851 | 15..760 | 3730 | 100 | Plus |
Tpi-RA | 1374 | CG2171-RA | 368..1113 | 15..760 | 3730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 03:58:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30133509..30134048 | 554..15 | 2700 | 100 | Minus |
3R | 32079331 | 3R | 30133242..30133451 | 760..551 | 1050 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 03:58:37 has no hits.
BS15695.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:34:34 Download gff for
BS15695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpi-PA | 302..1047 | 15..760 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:13:40 Download gff for
BS15695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2171-PA | 302..1047 | 15..760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 20:52:44 Download gff for
BS15695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpi-RA | 368..1115 | 15..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 05:25:03 Download gff for
BS15695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpi-RA | 368..1115 | 15..764 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 05:25:03 Download gff for
BS15695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30133240..30133448 | 554..764 | 99 | <- | Minus |
3R | 30133510..30134048 | 15..553 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 20:52:44 Download gff for
BS15695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25958962..25959170 | 554..764 | 99 | <- | Minus |
arm_3R | 25959232..25959770 | 15..553 | 100 | | Minus |
BS15695.complete Sequence
776 bp assembled on 2006-11-29
GenBank Submission: FJ637947
> BS15695.complete
GAAGTTATCAGTCGACATGAGCCGAAAGTTCTGCGTGGGAGGCAACTGGA
AGATGAACGGCGACCAGAAGTCCATCGCCGAGATCGCCAAGACCCTGAGC
TCGGCCGCCCTCGACCCCAACACGGAGGTGGTCATCGGCTGCCCGGCCAT
CTACCTGATGTACGCCCGCAACCTGCTGCCCTGCGAGCTGGGTCTGGCCG
GCCAGAATGCCTACAAGGTGGCCAAGGGCGCATTCACCGGCGAGATCTCC
CCTGCGATGCTGAAGGACATCGGCGCCGACTGGGTGATCCTGGGACACTC
GGAGCGTCGCGCCATCTTCGGCGAATCGGACGCCCTGATCGCCGAGAAGG
CCGAGCACGCCCTGGCCGAGGGCCTCAAGGTCATCGCCTGCATTGGTGAG
ACCCTGGAGGAGCGCGAGGCCGGCAAGACCAACGAGGTGGTGGCCCGCCA
AATGTGCGCCTACGCCCAGAAGATCAAGGACTGGAAGAACGTGGTGGTGG
CCTACGAGCCCGTCTGGGCCATTGGCACCGGCCAGACCGCCACACCCGAT
CAGGCTCAAGAGGTCCACGCCTTCCTGCGCCAGTGGCTGAGCGACAACAT
CTCCAAGGAGGTGTCCGCCAGCCTGCGCATCCAGTACGGTGGATCCGTGA
CCGCCGCCAACGCCAAGGAGCTGGCCAAGAAGCCCGACATAGATGGCTTC
CTGGTCGGAGGCGCCTCCCTGAAGCCCGAGTTCGTGGACATCATCAACGC
CCGGCAGTAAAAGCTTTCTAGACCAT
BS15695.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:29:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tpi-RA | 1047 | CG2171-PA | 302..1047 | 15..760 | 3730 | 100 | Plus |
Tpi-RC | 744 | CG2171-PC | 1..744 | 17..760 | 3720 | 100 | Plus |
Tpi-RB | 744 | CG2171-PB | 1..744 | 17..760 | 3720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tpi-RC | 1268 | CG2171-RC | 262..1007 | 15..760 | 3730 | 100 | Plus |
Tpi-RB | 1112 | CG2171-RB | 106..851 | 15..760 | 3730 | 100 | Plus |
Tpi-RA | 1374 | CG2171-RA | 368..1113 | 15..760 | 3730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30133509..30134048 | 554..15 | 2700 | 100 | Minus |
3R | 32079331 | 3R | 30133242..30133451 | 760..551 | 1050 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:29:26 has no hits.
BS15695.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:18 Download gff for
BS15695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpi-RA | 297..1047 | 9..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:37 Download gff for
BS15695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpi-RC | 223..975 | 9..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:32 Download gff for
BS15695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpi-RA | 370..1111 | 17..758 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:18 Download gff for
BS15695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpi-RC | 223..975 | 9..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:48 Download gff for
BS15695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpi-RA | 370..1111 | 17..758 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:48 Download gff for
BS15695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30133244..30133448 | 554..758 | 100 | <- | Minus |
3R | 30133510..30134046 | 17..553 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:32 Download gff for
BS15695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25958966..25959170 | 554..758 | 100 | <- | Minus |
arm_3R | 25959232..25959768 | 17..553 | 100 | | Minus |
BS15695.pep Sequence
Translation from 16 to 759
> BS15695.pep
MSRKFCVGGNWKMNGDQKSIAEIAKTLSSAALDPNTEVVIGCPAIYLMYA
RNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAI
FGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYA
QKIKDWKNVVVAYEPVWAIGTGQTATPDQAQEVHAFLRQWLSDNISKEVS
ASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLKPEFVDIINARQ*
BS15695.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tpi-PC | 247 | CG2171-PC | 1..247 | 1..247 | 1268 | 100 | Plus |
Tpi-PB | 247 | CG2171-PB | 1..247 | 1..247 | 1268 | 100 | Plus |
Tpi-PA | 348 | CG2171-PA | 102..348 | 1..247 | 1268 | 100 | Plus |