Clone BS15695 Report

Search the DGRC for BS15695

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:156
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptTpi-RB
Protein status:BS15695.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15695.3prime Sequence

774 bp (774 high quality bases) assembled on 2006-12-21

> BS15695.3prime
ATGGTCTAGAAAGCTTTTACTGTCGGGCGTTGATGATGTCCACGAACTCG
GGCTTCAGGGAGGCGCCTCCGACCAGGAAGCCATCTATGTCGGGCTTCTT
GGCCAGCTCCTTGGCGTTGGCGGCGGTCACGGATCCACCGTACTGGATGC
GCAGGCTGGCGGACACCTCCTTGGAGATGTTGTCGCTCAGCCACTGGCGC
AGGAAGGCGTGGACCTCTTGAGCCTGATCGGGTGTGGCGGTCTGGCCGGT
GCCAATGGCCCAGACGGGCTCGTAGGCCACCACCACGTTCTTCCAGTCCT
TGATCTTCTGGGCGTAGGCGCACATTTGGCGGGCCACCACCTCGTTGGTC
TTGCCGGCCTCGCGCTCCTCCAGGGTCTCACCAATGCAGGCGATGACCTT
GAGGCCCTCGGCCAGGGCGTGCTCGGCCTTCTCGGCGATCAGGGCGTCCG
ATTCGCCGAAGATGGCGCGACGCTCCGAGTGTCCCAGGATCACCCAGTCG
GCGCCGATGTCCTTCAGCATCGCAGGGGAGATCTCGCCGGTGAATGCGCC
CTTGGCCACCTTGTAGGCATTCTGGCCGGCCAGACCCAGCTCGCAGGGCA
GCAGGTTGCGGGCGTACATCAGGTAGATGGCCGGGCAGCCGATGACCACC
TCCGTGTTGGGGTCGAGGGCGGCCGAGCTCAGGGTCTTGGCGATCTCGGC
GATGGACTTCTGGTCGCCGTTCATCTTCCAGTTGCCTCCCACGCAGAACT
TTCGGCTCATGTCGACTGATAACT

BS15695.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG2171-PA 1047 Tpi-RA 302..1047 762..17 3705 99.8 Minus
CG2171-PB 744 Tpi-RB 1..744 760..17 3695 99.8 Minus
CG2171-PC 744 Tpi-RC 1..744 760..17 3695 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 03:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
Tpi-RC 1268 CG2171-RC 262..1007 762..17 3715 99.9 Minus
Tpi-RB 1112 CG2171-RB 106..851 762..17 3715 99.9 Minus
Tpi-RA 1374 CG2171-RA 368..1113 762..17 3715 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 03:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30133509..30134048 223..762 2700 100 Plus
3R 32079331 3R 30133242..30133451 17..226 1035 99.5 Plus
Blast to na_te.dros performed on 2015-01-30 03:01:41 has no hits.

BS15695.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:34:33 Download gff for BS15695.3prime
Subject Subject Range Query Range Percent Splice Strand
Tpi-PA 297..1047 17..768 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:13:38 Download gff for BS15695.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2171-PA 297..1047 17..768 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:29:30 Download gff for BS15695.3prime
Subject Subject Range Query Range Percent Splice Strand
Tpi-RA 363..1115 13..768 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:06:50 Download gff for BS15695.3prime
Subject Subject Range Query Range Percent Splice Strand
Tpi-RA 363..1115 13..768 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:06:50 Download gff for BS15695.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30133240..30133448 13..223 98 <- Plus
3R 30133510..30134053 224..768 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:29:30 Download gff for BS15695.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25958962..25959170 13..223 98 <- Plus
arm_3R 25959232..25959775 224..768 99   Plus

BS15695.5prime Sequence

774 bp (774 high quality bases) assembled on 2006-12-21

> BS15695.5prime
GAAGTTATCCGTCGACATGAGCCGAAAGTTCTGCGTGGGAGGCAACTGGA
AGATGAACGGCGACCAGAAGTCCATCGCCGAGATCGCCAAGACCCTGAGC
TCGGCCGCCCTCGACCCCAACACGGAGGTGGTCATCGGCTGCCCGGCCAT
CTACCTGATGTACGCCCGCAACCTGCTGCCCTGCGAGCTGGGTCTGGCCG
GCCAGAATGCCTACAAGGTGGCCAAGGGCGCATTCACCGGCGAGATCTCC
CCTGCGATGCTGAAGGACATCGGCGCCGACTGGGTGATCCTGGGACACTC
GGAGCGTCGCGCCATCTTCGGCGAATCGGACGCCCTGATCGCCGAGAAGG
CCGAGCACGCCCTGGCCGAGGGCCTCAAGGTCATCGCCTGCATTGGTGAG
ACCCTGGAGGAGCGCGAGGCCGGCAAGACCAACGAGGTGGTGGCCCGCCA
AATGTGCGCCTACGCCCAGAAGATCAAGGACTGGAAGAACGTGGTGGTGG
CCTACGAGCCCGTCTGGGCCATTGGCACCGGCCAGACCGCCACACCCGAT
CAGGCTCAAGAGGTCCACGCCTTCCTGCGCCAGTGGCTGAGCGACAACAT
CTCCAAGGAGGTGTCCGCCAGCCTGCGCATCCAGTACGGTGGATCCGTGA
CCGCCGCCAACGCCAAGGAGCTGGCCAAGAAGCCCGACATAGATGGCTTC
CTGGTCGGAGGCGCCTCCCTGAAGCCCGAGTTCGTGGACATCATCAACGC
CCGGCAGTAAAAGCTTTCTAGACC

BS15695.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG2171-PA 1047 Tpi-RA 302..1047 15..760 3730 100 Plus
CG2171-PB 744 Tpi-RB 1..744 17..760 3720 100 Plus
CG2171-PC 744 Tpi-RC 1..744 17..760 3720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 03:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
Tpi-RC 1268 CG2171-RC 262..1007 15..760 3730 100 Plus
Tpi-RB 1112 CG2171-RB 106..851 15..760 3730 100 Plus
Tpi-RA 1374 CG2171-RA 368..1113 15..760 3730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 03:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30133509..30134048 554..15 2700 100 Minus
3R 32079331 3R 30133242..30133451 760..551 1050 100 Minus
Blast to na_te.dros performed on 2015-01-31 03:58:37 has no hits.

BS15695.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:34:34 Download gff for BS15695.5prime
Subject Subject Range Query Range Percent Splice Strand
Tpi-PA 302..1047 15..760 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:13:40 Download gff for BS15695.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2171-PA 302..1047 15..760 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 20:52:44 Download gff for BS15695.5prime
Subject Subject Range Query Range Percent Splice Strand
Tpi-RA 368..1115 15..764 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 05:25:03 Download gff for BS15695.5prime
Subject Subject Range Query Range Percent Splice Strand
Tpi-RA 368..1115 15..764 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 05:25:03 Download gff for BS15695.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30133240..30133448 554..764 99 <- Minus
3R 30133510..30134048 15..553 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 20:52:44 Download gff for BS15695.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25958962..25959170 554..764 99 <- Minus
arm_3R 25959232..25959770 15..553 100   Minus

BS15695.complete Sequence

776 bp assembled on 2006-11-29

GenBank Submission: FJ637947

> BS15695.complete
GAAGTTATCAGTCGACATGAGCCGAAAGTTCTGCGTGGGAGGCAACTGGA
AGATGAACGGCGACCAGAAGTCCATCGCCGAGATCGCCAAGACCCTGAGC
TCGGCCGCCCTCGACCCCAACACGGAGGTGGTCATCGGCTGCCCGGCCAT
CTACCTGATGTACGCCCGCAACCTGCTGCCCTGCGAGCTGGGTCTGGCCG
GCCAGAATGCCTACAAGGTGGCCAAGGGCGCATTCACCGGCGAGATCTCC
CCTGCGATGCTGAAGGACATCGGCGCCGACTGGGTGATCCTGGGACACTC
GGAGCGTCGCGCCATCTTCGGCGAATCGGACGCCCTGATCGCCGAGAAGG
CCGAGCACGCCCTGGCCGAGGGCCTCAAGGTCATCGCCTGCATTGGTGAG
ACCCTGGAGGAGCGCGAGGCCGGCAAGACCAACGAGGTGGTGGCCCGCCA
AATGTGCGCCTACGCCCAGAAGATCAAGGACTGGAAGAACGTGGTGGTGG
CCTACGAGCCCGTCTGGGCCATTGGCACCGGCCAGACCGCCACACCCGAT
CAGGCTCAAGAGGTCCACGCCTTCCTGCGCCAGTGGCTGAGCGACAACAT
CTCCAAGGAGGTGTCCGCCAGCCTGCGCATCCAGTACGGTGGATCCGTGA
CCGCCGCCAACGCCAAGGAGCTGGCCAAGAAGCCCGACATAGATGGCTTC
CTGGTCGGAGGCGCCTCCCTGAAGCCCGAGTTCGTGGACATCATCAACGC
CCGGCAGTAAAAGCTTTCTAGACCAT

BS15695.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
Tpi-RA 1047 CG2171-PA 302..1047 15..760 3730 100 Plus
Tpi-RC 744 CG2171-PC 1..744 17..760 3720 100 Plus
Tpi-RB 744 CG2171-PB 1..744 17..760 3720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
Tpi-RC 1268 CG2171-RC 262..1007 15..760 3730 100 Plus
Tpi-RB 1112 CG2171-RB 106..851 15..760 3730 100 Plus
Tpi-RA 1374 CG2171-RA 368..1113 15..760 3730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30133509..30134048 554..15 2700 100 Minus
3R 32079331 3R 30133242..30133451 760..551 1050 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:29:26 has no hits.

BS15695.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:18 Download gff for BS15695.complete
Subject Subject Range Query Range Percent Splice Strand
Tpi-RA 297..1047 9..760 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:37 Download gff for BS15695.complete
Subject Subject Range Query Range Percent Splice Strand
Tpi-RC 223..975 9..764 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:32 Download gff for BS15695.complete
Subject Subject Range Query Range Percent Splice Strand
Tpi-RA 370..1111 17..758 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:18 Download gff for BS15695.complete
Subject Subject Range Query Range Percent Splice Strand
Tpi-RC 223..975 9..764 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:48 Download gff for BS15695.complete
Subject Subject Range Query Range Percent Splice Strand
Tpi-RA 370..1111 17..758 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:48 Download gff for BS15695.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30133244..30133448 554..758 100 <- Minus
3R 30133510..30134046 17..553 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:32 Download gff for BS15695.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25958966..25959170 554..758 100 <- Minus
arm_3R 25959232..25959768 17..553 100   Minus

BS15695.pep Sequence

Translation from 16 to 759

> BS15695.pep
MSRKFCVGGNWKMNGDQKSIAEIAKTLSSAALDPNTEVVIGCPAIYLMYA
RNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAI
FGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYA
QKIKDWKNVVVAYEPVWAIGTGQTATPDQAQEVHAFLRQWLSDNISKEVS
ASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLKPEFVDIINARQ*

BS15695.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
Tpi-PC 247 CG2171-PC 1..247 1..247 1268 100 Plus
Tpi-PB 247 CG2171-PB 1..247 1..247 1268 100 Plus
Tpi-PA 348 CG2171-PA 102..348 1..247 1268 100 Plus