Clone BS15701 Report

Search the DGRC for BS15701

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:157
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCG32240-RA
Protein status:BS15701.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15701.3prime Sequence

468 bp (468 high quality bases) assembled on 2006-12-21

> BS15701.3prime
ATGGTCTAGAAAGCTTCTAATCTTCTCCAGCACTTGGTTCGGCCACCTGC
TGCTGATCGGCCAAGTTATGCCTGAGTGGATATAGCTGCTCCATGTGTTC
TATAAAGGGTCGAATACCATCCGGATTCTTCATGTACTTGGCCACGCTGA
GGATGATGTGGCGGTAGATCTGGTGATCCCGATAGGCCGCATTCGGTCGT
CGCTTTTGTGGCGGTCGCTCTTGAGCTCTTTGAATCACCCGTCGTCGTCG
CACTGATTCAGTTCTTCGGCAGCGCTCACAATAAGCGAAATATGCACAAG
TGATGATTACCAGTGCGGAAAGTGCGTAGATGAGCCAACTCCAGCTGAGA
ACCGTCACAAATGTAGCATTCAAATCCCTCCAGATGGGCGAGATCTGCTC
CAGCTGGGTCTTTTTGGCATCCCTCCTCCAGAACACAAATTGAGGCATCA
TCATGTCGACTGATAACT

BS15701.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG32240-PA 438 CG32240-RA 1..438 454..17 2190 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 03:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG32240-RA 645 CG32240-RA 144..581 454..17 2190 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 03:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4380928..4381127 17..216 1000 100 Plus
3L 28110227 3L 4381190..4381327 216..353 690 100 Plus
3L 28110227 3L 4381385..4381486 353..454 510 100 Plus
Blast to na_te.dros performed on 2015-01-31 03:20:56 has no hits.

BS15701.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:34:36 Download gff for BS15701.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32240-PA 1..438 17..454 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:13:42 Download gff for BS15701.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32240-PA 1..438 17..454 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 20:46:54 Download gff for BS15701.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32240-RA 130..581 17..468 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 05:20:02 Download gff for BS15701.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32240-RA 130..581 17..468 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 05:20:02 Download gff for BS15701.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4380928..4381126 17..215 100 <- Plus
3L 4381190..4381327 216..353 100 <- Plus
3L 4381386..4381500 354..468 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 20:46:54 Download gff for BS15701.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4380928..4381126 17..215 100 <- Plus
arm_3L 4381190..4381327 216..353 100 <- Plus
arm_3L 4381386..4381500 354..468 95   Plus

BS15701.5prime Sequence

468 bp (468 high quality bases) assembled on 2006-12-21

> BS15701.5prime
GAAGTTATCCTTCGACATGATGATGCCTCAATTTGTGTTCTGGAGGAGGG
ATGCCAAAAAGACCCAGCTGGAGCAGATCTCGCCCATCTGGAGGGATTTG
AATGCTACATTTGTGACGGTTCTCAGCTGGAGTTGGCTCATCTACGCACT
TTCCGCACTGGTAATCATCACTTGTGCATATTTCGCTTATTGTGAGCGCT
GCCGAAGAACTGAATCAGTGCGACGACGACGGGTGATTCAAAGAGCTCAA
GAGCGACCGCCACAAAAGCGACGACCGAATGCGGCCTATCGGGATCACCA
GATCTACCGCCACATCATCCTCAGCGTGGCCAAGTACATGAAGAATCCGG
ATGGTATTCGACCCTTTATAGAACACATGGAGCAGCTATATCCACTCAGG
CATAACTTGGCCGATCAGCAGCAGGTGGCCGAACCAAGTGCTGGAGAAGA
TTAGAAGCTTTCTAGACC

BS15701.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG32240-PA 438 CG32240-RA 1..438 17..454 2190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG32240-RA 645 CG32240-RA 144..581 17..454 2190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4380928..4381127 454..255 1000 100 Minus
3L 28110227 3L 4381190..4381327 255..118 690 100 Minus
3L 28110227 3L 4381385..4381486 118..17 510 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:24:54 has no hits.

BS15701.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:34:37 Download gff for BS15701.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32240-PA 1..438 17..454 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:13:44 Download gff for BS15701.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32240-PA 1..438 17..454 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 13:01:45 Download gff for BS15701.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32240-RA 144..581 17..454 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:48:12 Download gff for BS15701.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32240-RA 144..581 17..454 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:48:12 Download gff for BS15701.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4380928..4381126 256..454 100 <- Minus
3L 4381190..4381327 118..255 100 <- Minus
3L 4381386..4381486 17..117 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 13:01:45 Download gff for BS15701.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4381386..4381486 17..117 100   Minus
arm_3L 4380928..4381126 256..454 100 <- Minus
arm_3L 4381190..4381327 118..255 100 <- Minus

BS15701.complete Sequence

470 bp assembled on 2006-11-29

GenBank Submission: FJ637948

> BS15701.complete
GAAGTTATCAGTCGACATGATGATGCCTCAATTTGTGTTCTGGAGGAGGG
ATGCCAAAAAGACCCAGCTGGAGCAGATCTCGCCCATCTGGAGGGATTTG
AATGCTACATTTGTGACGGTTCTCAGCTGGAGTTGGCTCATCTACGCACT
TTCCGCACTGGTAATCATCACTTGTGCATATTTCGCTTATTGTGAGCGCT
GCCGAAGAACTGAATCAGTGCGACGACGACGGGTGATTCAAAGAGCTCAA
GAGCGACCGCCACAAAAGCGACGACCGAATGCGGCCTATCGGGATCACCA
GATCTACCGCCACATCATCCTCAGCGTGGCCAAGTACATGAAGAATCCGG
ATGGTATTCGACCCTTTATAGAACACATGGAGCAGCTATATCCACTCAGG
CATAACTTGGCCGATCAGCAGCAGGTGGCCGAACCAAGTGCTGGAGAAGA
TTAGAAGCTTTCTAGACCAT

BS15701.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG32240-RA 438 CG32240-PA 1..438 17..454 2190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG32240-RA 645 CG32240-RA 144..581 17..454 2190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4380928..4381127 454..255 1000 100 Minus
3L 28110227 3L 4381190..4381327 255..118 690 100 Minus
3L 28110227 3L 4381385..4381486 118..17 510 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:38:43 has no hits.

BS15701.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:49 Download gff for BS15701.complete
Subject Subject Range Query Range Percent Splice Strand
CG32240-RA 1..438 17..454 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:26 Download gff for BS15701.complete
Subject Subject Range Query Range Percent Splice Strand
CG32240-RA 65..516 3..454 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:30 Download gff for BS15701.complete
Subject Subject Range Query Range Percent Splice Strand
CG32240-RA 144..581 17..454 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:49 Download gff for BS15701.complete
Subject Subject Range Query Range Percent Splice Strand
CG32240-RA 65..516 3..454 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:35 Download gff for BS15701.complete
Subject Subject Range Query Range Percent Splice Strand
CG32240-RA 144..581 17..454 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:35 Download gff for BS15701.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4380928..4381126 256..454 100 <- Minus
3L 4381190..4381327 118..255 100 <- Minus
3L 4381386..4381486 17..117 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:30 Download gff for BS15701.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4380928..4381126 256..454 100 <- Minus
arm_3L 4381190..4381327 118..255 100 <- Minus
arm_3L 4381386..4381486 17..117 100   Minus

BS15701.pep Sequence

Translation from 16 to 453

> BS15701.pep
MMMPQFVFWRRDAKKTQLEQISPIWRDLNATFVTVLSWSWLIYALSALVI
ITCAYFAYCERCRRTESVRRRRVIQRAQERPPQKRRPNAAYRDHQIYRHI
ILSVAKYMKNPDGIRPFIEHMEQLYPLRHNLADQQQVAEPSAGED*

BS15701.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG32240-PA 145 CG32240-PA 1..145 1..145 773 100 Plus