Clone Sequence Records
BS15701.3prime Sequence
468 bp (468 high quality bases) assembled on 2006-12-21
> BS15701.3prime
ATGGTCTAGAAAGCTTCTAATCTTCTCCAGCACTTGGTTCGGCCACCTGC
TGCTGATCGGCCAAGTTATGCCTGAGTGGATATAGCTGCTCCATGTGTTC
TATAAAGGGTCGAATACCATCCGGATTCTTCATGTACTTGGCCACGCTGA
GGATGATGTGGCGGTAGATCTGGTGATCCCGATAGGCCGCATTCGGTCGT
CGCTTTTGTGGCGGTCGCTCTTGAGCTCTTTGAATCACCCGTCGTCGTCG
CACTGATTCAGTTCTTCGGCAGCGCTCACAATAAGCGAAATATGCACAAG
TGATGATTACCAGTGCGGAAAGTGCGTAGATGAGCCAACTCCAGCTGAGA
ACCGTCACAAATGTAGCATTCAAATCCCTCCAGATGGGCGAGATCTGCTC
CAGCTGGGTCTTTTTGGCATCCCTCCTCCAGAACACAAATTGAGGCATCA
TCATGTCGACTGATAACT
BS15701.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32240-PA | 438 | CG32240-RA | 1..438 | 454..17 | 2190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 03:20:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32240-RA | 645 | CG32240-RA | 144..581 | 454..17 | 2190 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 03:20:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4380928..4381127 | 17..216 | 1000 | 100 | Plus |
3L | 28110227 | 3L | 4381190..4381327 | 216..353 | 690 | 100 | Plus |
3L | 28110227 | 3L | 4381385..4381486 | 353..454 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 03:20:56 has no hits.
BS15701.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:34:36 Download gff for
BS15701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32240-PA | 1..438 | 17..454 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:13:42 Download gff for
BS15701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32240-PA | 1..438 | 17..454 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 20:46:54 Download gff for
BS15701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32240-RA | 130..581 | 17..468 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 05:20:02 Download gff for
BS15701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32240-RA | 130..581 | 17..468 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 05:20:02 Download gff for
BS15701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4380928..4381126 | 17..215 | 100 | <- | Plus |
3L | 4381190..4381327 | 216..353 | 100 | <- | Plus |
3L | 4381386..4381500 | 354..468 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 20:46:54 Download gff for
BS15701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4380928..4381126 | 17..215 | 100 | <- | Plus |
arm_3L | 4381190..4381327 | 216..353 | 100 | <- | Plus |
arm_3L | 4381386..4381500 | 354..468 | 95 | | Plus |
BS15701.5prime Sequence
468 bp (468 high quality bases) assembled on 2006-12-21
> BS15701.5prime
GAAGTTATCCTTCGACATGATGATGCCTCAATTTGTGTTCTGGAGGAGGG
ATGCCAAAAAGACCCAGCTGGAGCAGATCTCGCCCATCTGGAGGGATTTG
AATGCTACATTTGTGACGGTTCTCAGCTGGAGTTGGCTCATCTACGCACT
TTCCGCACTGGTAATCATCACTTGTGCATATTTCGCTTATTGTGAGCGCT
GCCGAAGAACTGAATCAGTGCGACGACGACGGGTGATTCAAAGAGCTCAA
GAGCGACCGCCACAAAAGCGACGACCGAATGCGGCCTATCGGGATCACCA
GATCTACCGCCACATCATCCTCAGCGTGGCCAAGTACATGAAGAATCCGG
ATGGTATTCGACCCTTTATAGAACACATGGAGCAGCTATATCCACTCAGG
CATAACTTGGCCGATCAGCAGCAGGTGGCCGAACCAAGTGCTGGAGAAGA
TTAGAAGCTTTCTAGACC
BS15701.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32240-PA | 438 | CG32240-RA | 1..438 | 17..454 | 2190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32240-RA | 645 | CG32240-RA | 144..581 | 17..454 | 2190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4380928..4381127 | 454..255 | 1000 | 100 | Minus |
3L | 28110227 | 3L | 4381190..4381327 | 255..118 | 690 | 100 | Minus |
3L | 28110227 | 3L | 4381385..4381486 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:24:54 has no hits.
BS15701.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:34:37 Download gff for
BS15701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32240-PA | 1..438 | 17..454 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:13:44 Download gff for
BS15701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32240-PA | 1..438 | 17..454 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 13:01:45 Download gff for
BS15701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32240-RA | 144..581 | 17..454 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:48:12 Download gff for
BS15701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32240-RA | 144..581 | 17..454 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:48:12 Download gff for
BS15701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4380928..4381126 | 256..454 | 100 | <- | Minus |
3L | 4381190..4381327 | 118..255 | 100 | <- | Minus |
3L | 4381386..4381486 | 17..117 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 13:01:45 Download gff for
BS15701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4381386..4381486 | 17..117 | 100 | | Minus |
arm_3L | 4380928..4381126 | 256..454 | 100 | <- | Minus |
arm_3L | 4381190..4381327 | 118..255 | 100 | <- | Minus |
BS15701.complete Sequence
470 bp assembled on 2006-11-29
GenBank Submission: FJ637948
> BS15701.complete
GAAGTTATCAGTCGACATGATGATGCCTCAATTTGTGTTCTGGAGGAGGG
ATGCCAAAAAGACCCAGCTGGAGCAGATCTCGCCCATCTGGAGGGATTTG
AATGCTACATTTGTGACGGTTCTCAGCTGGAGTTGGCTCATCTACGCACT
TTCCGCACTGGTAATCATCACTTGTGCATATTTCGCTTATTGTGAGCGCT
GCCGAAGAACTGAATCAGTGCGACGACGACGGGTGATTCAAAGAGCTCAA
GAGCGACCGCCACAAAAGCGACGACCGAATGCGGCCTATCGGGATCACCA
GATCTACCGCCACATCATCCTCAGCGTGGCCAAGTACATGAAGAATCCGG
ATGGTATTCGACCCTTTATAGAACACATGGAGCAGCTATATCCACTCAGG
CATAACTTGGCCGATCAGCAGCAGGTGGCCGAACCAAGTGCTGGAGAAGA
TTAGAAGCTTTCTAGACCAT
BS15701.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:38:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32240-RA | 438 | CG32240-PA | 1..438 | 17..454 | 2190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:38:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32240-RA | 645 | CG32240-RA | 144..581 | 17..454 | 2190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:38:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4380928..4381127 | 454..255 | 1000 | 100 | Minus |
3L | 28110227 | 3L | 4381190..4381327 | 255..118 | 690 | 100 | Minus |
3L | 28110227 | 3L | 4381385..4381486 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:38:43 has no hits.
BS15701.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:49 Download gff for
BS15701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32240-RA | 1..438 | 17..454 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:26 Download gff for
BS15701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32240-RA | 65..516 | 3..454 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:30 Download gff for
BS15701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32240-RA | 144..581 | 17..454 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:49 Download gff for
BS15701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32240-RA | 65..516 | 3..454 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:35 Download gff for
BS15701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32240-RA | 144..581 | 17..454 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:35 Download gff for
BS15701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4380928..4381126 | 256..454 | 100 | <- | Minus |
3L | 4381190..4381327 | 118..255 | 100 | <- | Minus |
3L | 4381386..4381486 | 17..117 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:30 Download gff for
BS15701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4380928..4381126 | 256..454 | 100 | <- | Minus |
arm_3L | 4381190..4381327 | 118..255 | 100 | <- | Minus |
arm_3L | 4381386..4381486 | 17..117 | 100 | | Minus |
BS15701.pep Sequence
Translation from 16 to 453
> BS15701.pep
MMMPQFVFWRRDAKKTQLEQISPIWRDLNATFVTVLSWSWLIYALSALVI
ITCAYFAYCERCRRTESVRRRRVIQRAQERPPQKRRPNAAYRDHQIYRHI
ILSVAKYMKNPDGIRPFIEHMEQLYPLRHNLADQQQVAEPSAGED*
BS15701.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32240-PA | 145 | CG32240-PA | 1..145 | 1..145 | 773 | 100 | Plus |