Clone BS15708 Report

Search the DGRC for BS15708

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:157
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptNmda1-RC
Protein status:BS15708.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15708.3prime Sequence

764 bp (753 high quality bases) assembled on 2006-12-21

> BS15708.3prime
ATGGTCTAGAAAGCTTTTAGTCGCGCGATGCGCCGATTATAGTCAGAATG
TACATGAAGATATTGATGATGTCCAGGTAGAGGTTTAGTGCCGCAAAGAT
GTACTCCTCGGGACTGATAGAGTATTTGTGCTCGCCGCCCATCATTAACT
GTGTGTCGTAGATGAGATAAACGGAGAAGAGCAGCGCTCCAATCGAGGCG
TACACCAGTGTTATGATCTTTCCCTTTACAAAGATGGCCACGATGCCGAA
GATCAGGAACACCACCATGCAGGCGATCAAAATACCGCCCATCATAGTAA
AGTCGTACTTTGTCTGCAAGGCGAAGATCGTTAGGGCCAAGCAAACCGCT
GCTGTTATGCCCACCGCCATGAGAACCTCTTTCGGAGCATATTTGGTTGC
GGAAACTCCCATTAAGAACGACTGAGCTGCTGTAAACAGACCCAAGAATA
TGAAGTTCGTCGGTGTTTGGCGGCGCACACTTTCGCAGCAAGCCATAGAC
AGCATGGTTACTAACATTACGCCGAGGGCAACCCAAAAGAGCCACATGTT
ATTCCTGGCAAAGGTTTTAGTGCCCTCGTGGTATACAAACAGGGCAACAG
CTCCAAAAGTGACGATTAGTTGTCCCATTAGAATCAGGTACACCTTACGT
ATGAATCCGCGACGGATGCTTTGGTCGTCAAACGAGAAGTTCTTGGGCTG
GCTCTCCGGATCATCGTAGGCTCCGTAGCCGCCAGCAGATGGTGGTGGTT
GGATAAATCCCGGC

BS15708.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3798-PB 942 Nmda1-RB 195..942 764..17 3740 100 Minus
CG3798-PD 975 Nmda1-RD 228..975 764..17 3740 100 Minus
CG3798-PA 942 Nmda1-RA 195..942 764..17 3740 100 Minus
CG3798-PC 975 Nmda1-RC 228..975 764..17 3740 100 Minus
CG3798-PF 951 Nmda1-RF 204..951 764..17 3740 100 Minus
CG3798-PE 975 Nmda1-RE 228..975 764..17 3740 100 Minus
CG3814-PB 735 CG3814-RB 628..710 124..42 165 87.9 Minus
CG3814-PA 720 CG3814-RA 649..695 88..42 135 91.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
Nmda1-RI 1592 CG3798-RI 284..1031 764..17 3740 100 Minus
Nmda1-RH 1634 CG3798-RH 326..1073 764..17 3740 100 Minus
Nmda1-RG 1727 CG3798-RG 419..1166 764..17 3740 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 14:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12877655..12878016 17..378 1810 100 Plus
2R 25286936 2R 12878071..12878322 375..626 1260 100 Plus
2R 25286936 2R 12878384..12878523 625..764 700 100 Plus
2R 25286936 2R 12875289..12875635 33..379 415 74.6 Plus
3R 32079331 3R 14152992..14153129 47..184 240 78.3 Plus
Blast to na_te.dros performed on 2015-02-02 14:08:52 has no hits.

BS15708.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:34:52 Download gff for BS15708.3prime
Subject Subject Range Query Range Percent Splice Strand
Nmda1-PE 228..975 17..764 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:14:02 Download gff for BS15708.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3798-PD 228..975 17..764 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:14:52 Download gff for BS15708.3prime
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RG 419..1169 11..764 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:51:44 Download gff for BS15708.3prime
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RG 419..1169 11..764 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:51:44 Download gff for BS15708.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12877652..12878014 11..376 99 <- Plus
2R 12878073..12878321 377..625 100 <- Plus
2R 12878385..12878523 626..764 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:14:52 Download gff for BS15708.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8765157..8765519 11..376 99 <- Plus
arm_2R 8765578..8765826 377..625 100 <- Plus
arm_2R 8765890..8766028 626..764 100   Plus

BS15708.5prime Sequence

905 bp (778 high quality bases) assembled on 2006-12-21

> BS15708.5prime
GAAGTTATCAGTCGACATGTCCTGGCAAAGTGTTCCCCAGTATCCCCAAT
ACCAAGATCCCAACCAGCAGTACAACTATGGCGGCGGTAATCCCCCGCAG
GGAGGATATGGTGGATATCCACCTCAGGGCGGCTATCCACCTCAAGGACC
GCCGCAAGGCTACCCACCCTATGCACAAGGAGGTGCTCAACCCTATCCAC
AGCCCTACGGACAGGGGCCTCCACCGGGAGGTTATGCTCCCCAGCCGGGA
TTTATCCAACCACCACCATCTGCTGGCGGCTACGGAGCCTACGATGATCC
GGAGAGCCAGCCCAAGAACTTCTCGTTTGACGACCAAAGCATCCGTCGCG
GATTCATACGTAAGGTGTACCTGATTCTAATGGGACAACTAATCGTCACT
TTTGGAGCTGTTGCCCTGTTTGTATACCACGAGGGCACTAAAACCTTTGC
CAGGAATAACATGTGGCTCTTTTGGGTTGCCCTCGGCGTAATGTTAGTAA
CCATGCTGTCTATGGCTTGCTGCGAAAGTGTGCGCCGCCAAACACCGACG
AACTTCATATTCTTGGGTCTGTTTACAGCAGCTCAGTCGTTCTTAATGGG
AGTTTCCGCAACCAAATATGCTCCGAAAGAGGTTCTCATGGCGGTGGGCA
TAACAGCAGCGGTTTGCTTGGCCCTAACGATCTTCGCCTTGCAGACAAAG
TACGACTTTACTATGATGGGCGGTATTTTGATCGCCTGCATGGTGGTGTT
CCTGATCTTCGGCATCGTGGCCATCTTTGTAAAGGGAAAGATCATAACAC
TGGTGTACGCCTCGATTGGAGCGCTGCTCTTCTCCGTTTATCTCATCTAC
GACACACAGTTAATGATGGGCGGCGAGCACAAATACTCTATCAGTCCCCG
AGGAG

BS15708.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3798-PD 975 Nmda1-RD 1..882 17..898 4410 100 Plus
CG3798-PC 975 Nmda1-RC 1..882 17..898 4410 100 Plus
CG3798-PE 975 Nmda1-RE 1..882 17..898 4410 100 Plus
CG3798-PB 942 Nmda1-RB 4..849 53..898 4230 100 Plus
CG3798-PA 942 Nmda1-RA 4..849 53..898 4230 100 Plus
CG3798-PF 951 Nmda1-RF 15..858 55..898 4220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
Nmda1-RE 1742 CG3798-RE 207..1094 17..905 4420 99.9 Plus
Nmda1-RC 1701 CG3798-RC 166..1053 17..905 4420 99.9 Plus
Nmda1-RD 1800 CG3798-RD 265..1152 17..905 4420 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12878384..12878712 383..55 1645 100 Minus
2R 25286936 2R 12877748..12878016 898..630 1345 100 Minus
2R 25286936 2R 12878071..12878322 633..382 1260 100 Minus
2R 25286936 2R 12879052..12879091 56..17 200 100 Minus
2R 25286936 2R 12875367..12875635 897..629 190 71.4 Minus
Blast to na_te.dros performed on 2015-02-10 20:59:11 has no hits.

BS15708.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:34:53 Download gff for BS15708.5prime
Subject Subject Range Query Range Percent Splice Strand
Nmda1-PC 1..888 17..905 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:14:03 Download gff for BS15708.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3798-PE 1..888 17..905 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 16:38:56 Download gff for BS15708.5prime
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RD 255..1152 8..905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:29:18 Download gff for BS15708.5prime
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RD 255..1152 8..905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:29:18 Download gff for BS15708.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12877742..12878014 632..905 99 <- Minus
2R 12878073..12878321 383..631 100 <- Minus
2R 12878385..12878710 57..382 100 <- Minus
2R 12879052..12879097 8..56 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 16:38:56 Download gff for BS15708.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8765247..8765519 632..905 99 <- Minus
arm_2R 8765578..8765826 383..631 100 <- Minus
arm_2R 8765890..8766215 57..382 100 <- Minus
arm_2R 8766557..8766602 8..56 91   Minus

BS15708.complete Sequence

1007 bp assembled on 2006-11-29

GenBank Submission: FJ637949

> BS15708.complete
GAAGTTATCAGTCGACATGTCCTGGCAAAGTGTTCCCCAGTATCCCCAAT
ACCAAGATCCCAACCAGCAGTACAACTATGGCGGCGGTAATCCCCCGCAG
GGAGGATATGGTGGATATCCACCTCAGGGCGGCTATCCACCTCAAGGACC
GCCGCAAGGCTACCCACCCTATGCACAAGGAGGTGCTCAACCCTATCCAC
AGCCCTACGGACAGGGGCCTCCACCGGGAGGTTATGCTCCCCAGCCGGGA
TTTATCCAACCACCACCATCTGCTGGCGGCTACGGAGCCTACGATGATCC
GGAGAGCCAGCCCAAGAACTTCTCGTTTGACGACCAAAGCATCCGTCGCG
GATTCATACGTAAGGTGTACCTGATTCTAATGGGACAACTAATCGTCACT
TTTGGAGCTGTTGCCCTGTTTGTATACCACGAGGGCACTAAAACCTTTGC
CAGGAATAACATGTGGCTCTTTTGGGTTGCCCTCGGCGTAATGTTAGTAA
CCATGCTGTCTATGGCTTGCTGCGAAAGTGTGCGCCGCCAAACACCGACG
AACTTCATATTCTTGGGTCTGTTTACAGCAGCTCAGTCGTTCTTAATGGG
AGTTTCCGCAACCAAATATGCTCCGAAAGAGGTTCTCATGGCGGTGGGCA
TAACAGCAGCGGTTTGCTTGGCCCTAACGATCTTCGCCTTGCAGACAAAG
TACGACTTTACTATGATGGGCGGTATTTTGATCGCCTGCATGGTGGTGTT
CCTGATCTTCGGCATCGTGGCCATCTTTGTAAAGGGAAAGATCATAACAC
TGGTGTACGCCTCGATTGGAGCGCTGCTCTTCTCCGTTTATCTCATCTAC
GACACACAGTTAATGATGGGCGGCGAGCACAAATACTCTATCAGTCCCGA
GGAGTACATCTTTGCGGCACTAAACCTCTACCTGGACATCATCAATATCT
TCATGTACATTCTGACTATAATCGGCGCATCGCGCGACTAAAAGCTTTCT
AGACCAT

BS15708.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
Nmda1-RE 975 CG3798-PE 1..975 17..991 4875 100 Plus
Nmda1-RC 975 CG3798-PC 1..975 17..991 4875 100 Plus
Nmda1-RD 975 CG3798-PD 1..975 17..991 4875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
Nmda1-RE 1742 CG3798-RE 207..1181 17..991 4875 100 Plus
Nmda1-RC 1701 CG3798-RC 166..1140 17..991 4875 100 Plus
Nmda1-RD 1800 CG3798-RD 265..1239 17..991 4875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:35:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12877655..12878016 991..630 1810 100 Minus
2R 25286936 2R 12878384..12878712 383..55 1645 100 Minus
2R 25286936 2R 12878071..12878322 633..382 1260 100 Minus
2R 25286936 2R 12875289..12875635 975..629 415 74.6 Minus
3R 32079331 3R 14152992..14153129 961..824 240 78.3 Minus
2R 25286936 2R 12879052..12879091 56..17 200 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:35:20 has no hits.

BS15708.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:13 Download gff for BS15708.complete
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RE 1..975 17..991 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:37 Download gff for BS15708.complete
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RC 181..1168 8..997 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:34 Download gff for BS15708.complete
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RD 265..1237 17..989 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:28:25 Download gff for BS15708.complete
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RD 265..1237 17..989 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:28:25 Download gff for BS15708.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12877657..12878014 632..989 100 <- Minus
2R 12878073..12878321 383..631 100 <- Minus
2R 12878385..12878710 57..382 100 <- Minus
2R 12879052..12879091 17..56 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:34 Download gff for BS15708.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8765162..8765519 632..989 100 <- Minus
arm_2R 8765578..8765826 383..631 100 <- Minus
arm_2R 8765890..8766215 57..382 100 <- Minus
arm_2R 8766557..8766596 17..56 100   Minus

BS15708.pep Sequence

Translation from 16 to 990

> BS15708.pep
MSWQSVPQYPQYQDPNQQYNYGGGNPPQGGYGGYPPQGGYPPQGPPQGYP
PYAQGGAQPYPQPYGQGPPPGGYAPQPGFIQPPPSAGGYGAYDDPESQPK
NFSFDDQSIRRGFIRKVYLILMGQLIVTFGAVALFVYHEGTKTFARNNMW
LFWVALGVMLVTMLSMACCESVRRQTPTNFIFLGLFTAAQSFLMGVSATK
YAPKEVLMAVGITAAVCLALTIFALQTKYDFTMMGGILIACMVVFLIFGI
VAIFVKGKIITLVYASIGALLFSVYLIYDTQLMMGGEHKYSISPEEYIFA
ALNLYLDIINIFMYILTIIGASRD*

BS15708.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:51
Subject Length Description Subject Range Query Range Score Percent Strand
Nmda1-PE 324 CG3798-PE 1..324 1..324 1732 100 Plus
Nmda1-PC 324 CG3798-PC 1..324 1..324 1732 100 Plus
Nmda1-PD 324 CG3798-PD 1..324 1..324 1732 100 Plus
Nmda1-PH 313 CG3798-PH 2..313 13..324 1661 100 Plus
Nmda1-PG 313 CG3798-PG 2..313 13..324 1661 100 Plus