Clone Sequence Records
BS15708.3prime Sequence
764 bp (753 high quality bases) assembled on 2006-12-21
> BS15708.3prime
ATGGTCTAGAAAGCTTTTAGTCGCGCGATGCGCCGATTATAGTCAGAATG
TACATGAAGATATTGATGATGTCCAGGTAGAGGTTTAGTGCCGCAAAGAT
GTACTCCTCGGGACTGATAGAGTATTTGTGCTCGCCGCCCATCATTAACT
GTGTGTCGTAGATGAGATAAACGGAGAAGAGCAGCGCTCCAATCGAGGCG
TACACCAGTGTTATGATCTTTCCCTTTACAAAGATGGCCACGATGCCGAA
GATCAGGAACACCACCATGCAGGCGATCAAAATACCGCCCATCATAGTAA
AGTCGTACTTTGTCTGCAAGGCGAAGATCGTTAGGGCCAAGCAAACCGCT
GCTGTTATGCCCACCGCCATGAGAACCTCTTTCGGAGCATATTTGGTTGC
GGAAACTCCCATTAAGAACGACTGAGCTGCTGTAAACAGACCCAAGAATA
TGAAGTTCGTCGGTGTTTGGCGGCGCACACTTTCGCAGCAAGCCATAGAC
AGCATGGTTACTAACATTACGCCGAGGGCAACCCAAAAGAGCCACATGTT
ATTCCTGGCAAAGGTTTTAGTGCCCTCGTGGTATACAAACAGGGCAACAG
CTCCAAAAGTGACGATTAGTTGTCCCATTAGAATCAGGTACACCTTACGT
ATGAATCCGCGACGGATGCTTTGGTCGTCAAACGAGAAGTTCTTGGGCTG
GCTCTCCGGATCATCGTAGGCTCCGTAGCCGCCAGCAGATGGTGGTGGTT
GGATAAATCCCGGC
BS15708.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3798-PB | 942 | Nmda1-RB | 195..942 | 764..17 | 3740 | 100 | Minus |
CG3798-PD | 975 | Nmda1-RD | 228..975 | 764..17 | 3740 | 100 | Minus |
CG3798-PA | 942 | Nmda1-RA | 195..942 | 764..17 | 3740 | 100 | Minus |
CG3798-PC | 975 | Nmda1-RC | 228..975 | 764..17 | 3740 | 100 | Minus |
CG3798-PF | 951 | Nmda1-RF | 204..951 | 764..17 | 3740 | 100 | Minus |
CG3798-PE | 975 | Nmda1-RE | 228..975 | 764..17 | 3740 | 100 | Minus |
CG3814-PB | 735 | CG3814-RB | 628..710 | 124..42 | 165 | 87.9 | Minus |
CG3814-PA | 720 | CG3814-RA | 649..695 | 88..42 | 135 | 91.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:08:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nmda1-RI | 1592 | CG3798-RI | 284..1031 | 764..17 | 3740 | 100 | Minus |
Nmda1-RH | 1634 | CG3798-RH | 326..1073 | 764..17 | 3740 | 100 | Minus |
Nmda1-RG | 1727 | CG3798-RG | 419..1166 | 764..17 | 3740 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 14:08:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12877655..12878016 | 17..378 | 1810 | 100 | Plus |
2R | 25286936 | 2R | 12878071..12878322 | 375..626 | 1260 | 100 | Plus |
2R | 25286936 | 2R | 12878384..12878523 | 625..764 | 700 | 100 | Plus |
2R | 25286936 | 2R | 12875289..12875635 | 33..379 | 415 | 74.6 | Plus |
3R | 32079331 | 3R | 14152992..14153129 | 47..184 | 240 | 78.3 | Plus |
Blast to na_te.dros performed on 2015-02-02 14:08:52 has no hits.
BS15708.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:34:52 Download gff for
BS15708.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmda1-PE | 228..975 | 17..764 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:14:02 Download gff for
BS15708.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3798-PD | 228..975 | 17..764 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:14:52 Download gff for
BS15708.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmda1-RG | 419..1169 | 11..764 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:51:44 Download gff for
BS15708.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmda1-RG | 419..1169 | 11..764 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:51:44 Download gff for
BS15708.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12877652..12878014 | 11..376 | 99 | <- | Plus |
2R | 12878073..12878321 | 377..625 | 100 | <- | Plus |
2R | 12878385..12878523 | 626..764 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:14:52 Download gff for
BS15708.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8765157..8765519 | 11..376 | 99 | <- | Plus |
arm_2R | 8765578..8765826 | 377..625 | 100 | <- | Plus |
arm_2R | 8765890..8766028 | 626..764 | 100 | | Plus |
BS15708.5prime Sequence
905 bp (778 high quality bases) assembled on 2006-12-21
> BS15708.5prime
GAAGTTATCAGTCGACATGTCCTGGCAAAGTGTTCCCCAGTATCCCCAAT
ACCAAGATCCCAACCAGCAGTACAACTATGGCGGCGGTAATCCCCCGCAG
GGAGGATATGGTGGATATCCACCTCAGGGCGGCTATCCACCTCAAGGACC
GCCGCAAGGCTACCCACCCTATGCACAAGGAGGTGCTCAACCCTATCCAC
AGCCCTACGGACAGGGGCCTCCACCGGGAGGTTATGCTCCCCAGCCGGGA
TTTATCCAACCACCACCATCTGCTGGCGGCTACGGAGCCTACGATGATCC
GGAGAGCCAGCCCAAGAACTTCTCGTTTGACGACCAAAGCATCCGTCGCG
GATTCATACGTAAGGTGTACCTGATTCTAATGGGACAACTAATCGTCACT
TTTGGAGCTGTTGCCCTGTTTGTATACCACGAGGGCACTAAAACCTTTGC
CAGGAATAACATGTGGCTCTTTTGGGTTGCCCTCGGCGTAATGTTAGTAA
CCATGCTGTCTATGGCTTGCTGCGAAAGTGTGCGCCGCCAAACACCGACG
AACTTCATATTCTTGGGTCTGTTTACAGCAGCTCAGTCGTTCTTAATGGG
AGTTTCCGCAACCAAATATGCTCCGAAAGAGGTTCTCATGGCGGTGGGCA
TAACAGCAGCGGTTTGCTTGGCCCTAACGATCTTCGCCTTGCAGACAAAG
TACGACTTTACTATGATGGGCGGTATTTTGATCGCCTGCATGGTGGTGTT
CCTGATCTTCGGCATCGTGGCCATCTTTGTAAAGGGAAAGATCATAACAC
TGGTGTACGCCTCGATTGGAGCGCTGCTCTTCTCCGTTTATCTCATCTAC
GACACACAGTTAATGATGGGCGGCGAGCACAAATACTCTATCAGTCCCCG
AGGAG
BS15708.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3798-PD | 975 | Nmda1-RD | 1..882 | 17..898 | 4410 | 100 | Plus |
CG3798-PC | 975 | Nmda1-RC | 1..882 | 17..898 | 4410 | 100 | Plus |
CG3798-PE | 975 | Nmda1-RE | 1..882 | 17..898 | 4410 | 100 | Plus |
CG3798-PB | 942 | Nmda1-RB | 4..849 | 53..898 | 4230 | 100 | Plus |
CG3798-PA | 942 | Nmda1-RA | 4..849 | 53..898 | 4230 | 100 | Plus |
CG3798-PF | 951 | Nmda1-RF | 15..858 | 55..898 | 4220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nmda1-RE | 1742 | CG3798-RE | 207..1094 | 17..905 | 4420 | 99.9 | Plus |
Nmda1-RC | 1701 | CG3798-RC | 166..1053 | 17..905 | 4420 | 99.9 | Plus |
Nmda1-RD | 1800 | CG3798-RD | 265..1152 | 17..905 | 4420 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12878384..12878712 | 383..55 | 1645 | 100 | Minus |
2R | 25286936 | 2R | 12877748..12878016 | 898..630 | 1345 | 100 | Minus |
2R | 25286936 | 2R | 12878071..12878322 | 633..382 | 1260 | 100 | Minus |
2R | 25286936 | 2R | 12879052..12879091 | 56..17 | 200 | 100 | Minus |
2R | 25286936 | 2R | 12875367..12875635 | 897..629 | 190 | 71.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:59:11 has no hits.
BS15708.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:34:53 Download gff for
BS15708.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmda1-PC | 1..888 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:14:03 Download gff for
BS15708.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3798-PE | 1..888 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 16:38:56 Download gff for
BS15708.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmda1-RD | 255..1152 | 8..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:29:18 Download gff for
BS15708.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmda1-RD | 255..1152 | 8..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:29:18 Download gff for
BS15708.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12877742..12878014 | 632..905 | 99 | <- | Minus |
2R | 12878073..12878321 | 383..631 | 100 | <- | Minus |
2R | 12878385..12878710 | 57..382 | 100 | <- | Minus |
2R | 12879052..12879097 | 8..56 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 16:38:56 Download gff for
BS15708.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8765247..8765519 | 632..905 | 99 | <- | Minus |
arm_2R | 8765578..8765826 | 383..631 | 100 | <- | Minus |
arm_2R | 8765890..8766215 | 57..382 | 100 | <- | Minus |
arm_2R | 8766557..8766602 | 8..56 | 91 | | Minus |
BS15708.complete Sequence
1007 bp assembled on 2006-11-29
GenBank Submission: FJ637949
> BS15708.complete
GAAGTTATCAGTCGACATGTCCTGGCAAAGTGTTCCCCAGTATCCCCAAT
ACCAAGATCCCAACCAGCAGTACAACTATGGCGGCGGTAATCCCCCGCAG
GGAGGATATGGTGGATATCCACCTCAGGGCGGCTATCCACCTCAAGGACC
GCCGCAAGGCTACCCACCCTATGCACAAGGAGGTGCTCAACCCTATCCAC
AGCCCTACGGACAGGGGCCTCCACCGGGAGGTTATGCTCCCCAGCCGGGA
TTTATCCAACCACCACCATCTGCTGGCGGCTACGGAGCCTACGATGATCC
GGAGAGCCAGCCCAAGAACTTCTCGTTTGACGACCAAAGCATCCGTCGCG
GATTCATACGTAAGGTGTACCTGATTCTAATGGGACAACTAATCGTCACT
TTTGGAGCTGTTGCCCTGTTTGTATACCACGAGGGCACTAAAACCTTTGC
CAGGAATAACATGTGGCTCTTTTGGGTTGCCCTCGGCGTAATGTTAGTAA
CCATGCTGTCTATGGCTTGCTGCGAAAGTGTGCGCCGCCAAACACCGACG
AACTTCATATTCTTGGGTCTGTTTACAGCAGCTCAGTCGTTCTTAATGGG
AGTTTCCGCAACCAAATATGCTCCGAAAGAGGTTCTCATGGCGGTGGGCA
TAACAGCAGCGGTTTGCTTGGCCCTAACGATCTTCGCCTTGCAGACAAAG
TACGACTTTACTATGATGGGCGGTATTTTGATCGCCTGCATGGTGGTGTT
CCTGATCTTCGGCATCGTGGCCATCTTTGTAAAGGGAAAGATCATAACAC
TGGTGTACGCCTCGATTGGAGCGCTGCTCTTCTCCGTTTATCTCATCTAC
GACACACAGTTAATGATGGGCGGCGAGCACAAATACTCTATCAGTCCCGA
GGAGTACATCTTTGCGGCACTAAACCTCTACCTGGACATCATCAATATCT
TCATGTACATTCTGACTATAATCGGCGCATCGCGCGACTAAAAGCTTTCT
AGACCAT
BS15708.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:35:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nmda1-RE | 975 | CG3798-PE | 1..975 | 17..991 | 4875 | 100 | Plus |
Nmda1-RC | 975 | CG3798-PC | 1..975 | 17..991 | 4875 | 100 | Plus |
Nmda1-RD | 975 | CG3798-PD | 1..975 | 17..991 | 4875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:35:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nmda1-RE | 1742 | CG3798-RE | 207..1181 | 17..991 | 4875 | 100 | Plus |
Nmda1-RC | 1701 | CG3798-RC | 166..1140 | 17..991 | 4875 | 100 | Plus |
Nmda1-RD | 1800 | CG3798-RD | 265..1239 | 17..991 | 4875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:35:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12877655..12878016 | 991..630 | 1810 | 100 | Minus |
2R | 25286936 | 2R | 12878384..12878712 | 383..55 | 1645 | 100 | Minus |
2R | 25286936 | 2R | 12878071..12878322 | 633..382 | 1260 | 100 | Minus |
2R | 25286936 | 2R | 12875289..12875635 | 975..629 | 415 | 74.6 | Minus |
3R | 32079331 | 3R | 14152992..14153129 | 961..824 | 240 | 78.3 | Minus |
2R | 25286936 | 2R | 12879052..12879091 | 56..17 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:35:20 has no hits.
BS15708.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:13 Download gff for
BS15708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmda1-RE | 1..975 | 17..991 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:37 Download gff for
BS15708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmda1-RC | 181..1168 | 8..997 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:34 Download gff for
BS15708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmda1-RD | 265..1237 | 17..989 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:28:25 Download gff for
BS15708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmda1-RD | 265..1237 | 17..989 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:28:25 Download gff for
BS15708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12877657..12878014 | 632..989 | 100 | <- | Minus |
2R | 12878073..12878321 | 383..631 | 100 | <- | Minus |
2R | 12878385..12878710 | 57..382 | 100 | <- | Minus |
2R | 12879052..12879091 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:34 Download gff for
BS15708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8765162..8765519 | 632..989 | 100 | <- | Minus |
arm_2R | 8765578..8765826 | 383..631 | 100 | <- | Minus |
arm_2R | 8765890..8766215 | 57..382 | 100 | <- | Minus |
arm_2R | 8766557..8766596 | 17..56 | 100 | | Minus |
BS15708.pep Sequence
Translation from 16 to 990
> BS15708.pep
MSWQSVPQYPQYQDPNQQYNYGGGNPPQGGYGGYPPQGGYPPQGPPQGYP
PYAQGGAQPYPQPYGQGPPPGGYAPQPGFIQPPPSAGGYGAYDDPESQPK
NFSFDDQSIRRGFIRKVYLILMGQLIVTFGAVALFVYHEGTKTFARNNMW
LFWVALGVMLVTMLSMACCESVRRQTPTNFIFLGLFTAAQSFLMGVSATK
YAPKEVLMAVGITAAVCLALTIFALQTKYDFTMMGGILIACMVVFLIFGI
VAIFVKGKIITLVYASIGALLFSVYLIYDTQLMMGGEHKYSISPEEYIFA
ALNLYLDIINIFMYILTIIGASRD*
BS15708.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nmda1-PE | 324 | CG3798-PE | 1..324 | 1..324 | 1732 | 100 | Plus |
Nmda1-PC | 324 | CG3798-PC | 1..324 | 1..324 | 1732 | 100 | Plus |
Nmda1-PD | 324 | CG3798-PD | 1..324 | 1..324 | 1732 | 100 | Plus |
Nmda1-PH | 313 | CG3798-PH | 2..313 | 13..324 | 1661 | 100 | Plus |
Nmda1-PG | 313 | CG3798-PG | 2..313 | 13..324 | 1661 | 100 | Plus |