Clone Sequence Records
BS15710.3prime Sequence
393 bp (393 high quality bases) assembled on 2006-12-21
> BS15710.3prime
ATGGTCTAGAAAGCTTTCACCTTGGTCCATACAAAACTATTAGGCAGAGG
TTTGGCAAAGGTATGCGCAGCACCATTTCCTCAAAAGTTGCAAATTGGTC
ATCTGTCAGTAGAGGCGCCAATAGTTCATCTTCGTAGCTGGCCACCAAGT
CCAAGTTGTACTTGCCCGGTTGTTGAACTTCGTAGGGCATCAAAGAGAGC
ACTGATTCGCCGAGGCAGCTCTTTGCTACCTGAAAGTCCTGTTCGCAGCT
CAAGCAGGTGCGCACGCCCATACAACCGCAACTATGAATTGTATTCATCC
TGGGGTTGTACTGATTTGTCATTCTCCATTTCTGCATCGTCATCGGACTC
CGAATCCATTTCAGCAGCATTCTTGCCATGTCGACTGATAACT
BS15710.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18854-PC | 363 | CG18854-RC | 1..363 | 379..17 | 1790 | 99.7 | Minus |
CG18854-PA | 282 | CG18854-RA | 1..282 | 298..17 | 1385 | 99.6 | Minus |
CG18854-PB | 282 | CG18854-RB | 1..282 | 298..17 | 1385 | 99.6 | Minus |
CG4036-PA | 915 | CG4036-RA | 558..749 | 218..27 | 660 | 93.7 | Minus |
CG4036-PA | 915 | CG4036-RA | 18..68 | 281..231 | 205 | 96 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:03:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4036-RB | 950 | CG4036-RB | 579..774 | 218..23 | 785 | 93.4 | Minus |
CG4036-RA | 1002 | CG4036-RA | 631..826 | 218..23 | 785 | 93.4 | Minus |
CG4036-RA | 1002 | CG4036-RA | 70..152 | 302..220 | 295 | 90.4 | Minus |
CG4036-RB | 950 | CG4036-RB | 20..100 | 300..220 | 285 | 90.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:03:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9789367..9789617 | 51..301 | 1255 | 100 | Plus |
2L | 23513712 | 2L | 9791527..9791694 | 218..51 | 705 | 94.6 | Minus |
2L | 23513712 | 2L | 9789790..9789870 | 299..379 | 405 | 100 | Plus |
2L | 23513712 | 2L | 9790966..9791048 | 302..220 | 295 | 90.4 | Minus |
2L | 23513712 | 2L | 9790662..9790709 | 363..316 | 180 | 91.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:03:55 has no hits.
BS15710.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:34:56 Download gff for
BS15710.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18854-PC | 1..363 | 17..379 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:14:08 Download gff for
BS15710.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18854-PC | 1..363 | 17..379 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 16:40:14 Download gff for
BS15710.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 632..826 | 23..217 | 93 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:30:45 Download gff for
BS15710.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 632..826 | 23..217 | 93 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:30:45 Download gff for
BS15710.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9789367..9789615 | 51..299 | 100 | <- | Plus |
2L | 9789791..9789883 | 300..391 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 16:40:14 Download gff for
BS15710.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9789367..9789615 | 51..299 | 100 | <- | Plus |
arm_2L | 9789791..9789883 | 300..391 | 95 | | Plus |
BS15710.5prime Sequence
393 bp (393 high quality bases) assembled on 2006-12-21
> BS15710.5prime
GAAGTTATCCTTCGACATGGCAAGAATGCTGCTGAAATGGATTCGGAGTC
CGATGACGATGCAGAAATGGAGAATGACAAATCAGTACAACCCCAGGATG
AATACAATTCATAGTTGCGGTTGTATGGGCGTGCGCACCTGCTTGAGCTG
CGAACAGGACTTTCAGGTAGCAAAGAGCTGCCTCGGCGAATCAGTGCTCT
CTTTGATGCCCTACGAAGTTCAACAACCGGGCAAGTACAACTTGGACTTG
GTGGCCAGCTACGAAGATGAACTATTGGCGCCTCTACTGACAGATGACCA
ATTTGCAACTTTTGAGGAAATGGTGCTGCGCATACCTTTGCCAAACCTCT
GCCTAATAGTTTTGTATGGACCAGGGTGAAAGCTTTCTAGACC
BS15710.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18854-PC | 363 | CG18854-RC | 1..363 | 17..379 | 1815 | 100 | Plus |
CG18854-PA | 282 | CG18854-RA | 1..282 | 98..379 | 1410 | 100 | Plus |
CG18854-PB | 282 | CG18854-RB | 1..282 | 98..379 | 1410 | 100 | Plus |
CG4036-PA | 915 | CG4036-RA | 558..749 | 178..369 | 660 | 93.7 | Plus |
CG4036-PA | 915 | CG4036-RA | 18..68 | 115..165 | 205 | 96 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:06:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4036-RB | 950 | CG4036-RB | 579..775 | 178..374 | 790 | 93.4 | Plus |
CG4036-RA | 1002 | CG4036-RA | 631..827 | 178..374 | 790 | 93.4 | Plus |
CG4036-RA | 1002 | CG4036-RA | 70..152 | 94..176 | 295 | 90.4 | Plus |
CG4036-RB | 950 | CG4036-RB | 20..100 | 96..176 | 285 | 90.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 14:06:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9789367..9789617 | 345..95 | 1255 | 100 | Minus |
2L | 23513712 | 2L | 9791527..9791694 | 178..345 | 705 | 94.6 | Plus |
2L | 23513712 | 2L | 9789790..9789870 | 97..17 | 405 | 100 | Minus |
2L | 23513712 | 2L | 9790966..9791048 | 94..176 | 295 | 90.4 | Plus |
2L | 23513712 | 2L | 9790662..9790709 | 33..80 | 180 | 91.7 | Plus |
Blast to na_te.dros performed on 2015-02-02 14:06:28 has no hits.
BS15710.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:34:57 Download gff for
BS15710.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18854-PC | 1..363 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:14:09 Download gff for
BS15710.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18854-PC | 1..363 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:14:24 Download gff for
BS15710.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 632..827 | 179..374 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:51:24 Download gff for
BS15710.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 632..827 | 179..374 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:51:24 Download gff for
BS15710.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9789367..9789615 | 97..345 | 100 | <- | Minus |
2L | 9789791..9789887 | 1..96 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:14:24 Download gff for
BS15710.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9789367..9789615 | 97..345 | 100 | <- | Minus |
arm_2L | 9789791..9789887 | 1..96 | 94 | | Minus |
BS15710.complete Sequence
395 bp assembled on 2006-11-29
> BS15710.complete
GAAGTTATCAGTCGACATGGCAAGAATGCTGCTGAAATGGATTCGGAGTC
CGATGACGATGCAGAAATGGAGAATGACAAATCAGTACAACCCCAGGATG
AATACAATTCATAGTTGCGGTTGTATGGGCGTGCGCACCTGCTTGAGCTG
CGAACAGGACTTTCAGGTAGCAAAGAGCTGCCTCGGCGAATCAGTGCTCT
CTTTGATGCCCTACGAAGTTCAACAACCGGGCAAGTACAACTTGGACTTG
GTGGCCAGCTACGAAGATGAACTATTGGCGCCTCTACTGACAGATGACCA
ATTTGCAACTTTTGAGGAAATGGTGCTGCGCATACCTTTGCCAAACCTCT
GCCTAATAGTTTTGTATGGACCAGGGTGAAAGCTTTCTAGACCAT
BS15710.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4036-RB | 915 | CG4036-PB | 558..754 | 178..374 | 790 | 93.4 | Plus |
CG4036-RA | 915 | CG4036-PA | 558..754 | 178..374 | 790 | 93.4 | Plus |
CG4036-RB | 915 | CG4036-PB | 1..79 | 98..176 | 275 | 89.9 | Plus |
CG4036-RA | 915 | CG4036-PA | 1..79 | 98..176 | 275 | 89.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4036-RB | 950 | CG4036-RB | 579..775 | 178..374 | 790 | 93.4 | Plus |
CG4036-RA | 1002 | CG4036-RA | 631..827 | 178..374 | 790 | 93.4 | Plus |
CG4036-RA | 1002 | CG4036-RA | 70..152 | 94..176 | 295 | 90.4 | Plus |
CG4036-RB | 950 | CG4036-RB | 20..100 | 96..176 | 285 | 90.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:37:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9789367..9789617 | 345..95 | 1255 | 100 | Minus |
2L | 23513712 | 2L | 9791527..9791694 | 178..345 | 705 | 94.6 | Plus |
2L | 23513712 | 2L | 9789790..9789870 | 97..17 | 405 | 100 | Minus |
2L | 23513712 | 2L | 9790966..9791048 | 94..176 | 295 | 90.4 | Plus |
2L | 23513712 | 2L | 9790662..9790709 | 33..80 | 180 | 91.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:37:04 has no hits.
BS15710.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:14 Download gff for
BS15710.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18854-RC | 1..363 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:39 Download gff for
BS15710.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18854-RC | 557..947 | 5..391 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:47 Download gff for
BS15710.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 632..831 | 179..378 | 92 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:14 Download gff for
BS15710.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18854-RC | 557..947 | 5..391 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:21 Download gff for
BS15710.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 632..831 | 179..378 | 92 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:21 Download gff for
BS15710.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9789274..9789306 | 346..378 | 100 | <- | Minus |
2L | 9789367..9789615 | 97..345 | 100 | <- | Minus |
2L | 9789791..9789870 | 17..96 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:47 Download gff for
BS15710.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9789274..9789306 | 346..378 | 100 | <- | Minus |
arm_2L | 9789367..9789615 | 97..345 | 100 | <- | Minus |
arm_2L | 9789791..9789870 | 17..96 | 100 | | Minus |
BS15710.pep Sequence
Translation from 16 to 378
> BS15710.pep
MARMLLKWIRSPMTMQKWRMTNQYNPRMNTIHSCGCMGVRTCLSCEQDFQ
VAKSCLGESVLSLMPYEVQQPGKYNLDLVASYEDELLAPLLTDDQFATFE
EMVLRIPLPNLCLIVLYGPG*
BS15710.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:00:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4036-PB | 304 | CG4036-PB | 183..251 | 51..119 | 289 | 82.6 | Plus |
CG4036-PA | 304 | CG4036-PA | 183..251 | 51..119 | 289 | 82.6 | Plus |