Clone BS15710 Report

Search the DGRC for BS15710

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:157
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG18854-RC
Protein status:BS15710.pep: validated full length
Sequenced Size:16

Clone Sequence Records

BS15710.3prime Sequence

393 bp (393 high quality bases) assembled on 2006-12-21

> BS15710.3prime
ATGGTCTAGAAAGCTTTCACCTTGGTCCATACAAAACTATTAGGCAGAGG
TTTGGCAAAGGTATGCGCAGCACCATTTCCTCAAAAGTTGCAAATTGGTC
ATCTGTCAGTAGAGGCGCCAATAGTTCATCTTCGTAGCTGGCCACCAAGT
CCAAGTTGTACTTGCCCGGTTGTTGAACTTCGTAGGGCATCAAAGAGAGC
ACTGATTCGCCGAGGCAGCTCTTTGCTACCTGAAAGTCCTGTTCGCAGCT
CAAGCAGGTGCGCACGCCCATACAACCGCAACTATGAATTGTATTCATCC
TGGGGTTGTACTGATTTGTCATTCTCCATTTCTGCATCGTCATCGGACTC
CGAATCCATTTCAGCAGCATTCTTGCCATGTCGACTGATAACT

BS15710.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG18854-PC 363 CG18854-RC 1..363 379..17 1790 99.7 Minus
CG18854-PA 282 CG18854-RA 1..282 298..17 1385 99.6 Minus
CG18854-PB 282 CG18854-RB 1..282 298..17 1385 99.6 Minus
CG4036-PA 915 CG4036-RA 558..749 218..27 660 93.7 Minus
CG4036-PA 915 CG4036-RA 18..68 281..231 205 96 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:03:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4036-RB 950 CG4036-RB 579..774 218..23 785 93.4 Minus
CG4036-RA 1002 CG4036-RA 631..826 218..23 785 93.4 Minus
CG4036-RA 1002 CG4036-RA 70..152 302..220 295 90.4 Minus
CG4036-RB 950 CG4036-RB 20..100 300..220 285 90.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:03:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9789367..9789617 51..301 1255 100 Plus
2L 23513712 2L 9791527..9791694 218..51 705 94.6 Minus
2L 23513712 2L 9789790..9789870 299..379 405 100 Plus
2L 23513712 2L 9790966..9791048 302..220 295 90.4 Minus
2L 23513712 2L 9790662..9790709 363..316 180 91.7 Minus
Blast to na_te.dros performed on 2015-02-10 21:03:55 has no hits.

BS15710.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:34:56 Download gff for BS15710.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18854-PC 1..363 17..379 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:14:08 Download gff for BS15710.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18854-PC 1..363 17..379 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 16:40:14 Download gff for BS15710.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 632..826 23..217 93   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:30:45 Download gff for BS15710.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 632..826 23..217 93   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:30:45 Download gff for BS15710.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9789367..9789615 51..299 100 <- Plus
2L 9789791..9789883 300..391 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 16:40:14 Download gff for BS15710.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9789367..9789615 51..299 100 <- Plus
arm_2L 9789791..9789883 300..391 95   Plus

BS15710.5prime Sequence

393 bp (393 high quality bases) assembled on 2006-12-21

> BS15710.5prime
GAAGTTATCCTTCGACATGGCAAGAATGCTGCTGAAATGGATTCGGAGTC
CGATGACGATGCAGAAATGGAGAATGACAAATCAGTACAACCCCAGGATG
AATACAATTCATAGTTGCGGTTGTATGGGCGTGCGCACCTGCTTGAGCTG
CGAACAGGACTTTCAGGTAGCAAAGAGCTGCCTCGGCGAATCAGTGCTCT
CTTTGATGCCCTACGAAGTTCAACAACCGGGCAAGTACAACTTGGACTTG
GTGGCCAGCTACGAAGATGAACTATTGGCGCCTCTACTGACAGATGACCA
ATTTGCAACTTTTGAGGAAATGGTGCTGCGCATACCTTTGCCAAACCTCT
GCCTAATAGTTTTGTATGGACCAGGGTGAAAGCTTTCTAGACC

BS15710.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG18854-PC 363 CG18854-RC 1..363 17..379 1815 100 Plus
CG18854-PA 282 CG18854-RA 1..282 98..379 1410 100 Plus
CG18854-PB 282 CG18854-RB 1..282 98..379 1410 100 Plus
CG4036-PA 915 CG4036-RA 558..749 178..369 660 93.7 Plus
CG4036-PA 915 CG4036-RA 18..68 115..165 205 96 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4036-RB 950 CG4036-RB 579..775 178..374 790 93.4 Plus
CG4036-RA 1002 CG4036-RA 631..827 178..374 790 93.4 Plus
CG4036-RA 1002 CG4036-RA 70..152 94..176 295 90.4 Plus
CG4036-RB 950 CG4036-RB 20..100 96..176 285 90.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 14:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9789367..9789617 345..95 1255 100 Minus
2L 23513712 2L 9791527..9791694 178..345 705 94.6 Plus
2L 23513712 2L 9789790..9789870 97..17 405 100 Minus
2L 23513712 2L 9790966..9791048 94..176 295 90.4 Plus
2L 23513712 2L 9790662..9790709 33..80 180 91.7 Plus
Blast to na_te.dros performed on 2015-02-02 14:06:28 has no hits.

BS15710.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:34:57 Download gff for BS15710.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18854-PC 1..363 17..379 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:14:09 Download gff for BS15710.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18854-PC 1..363 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:14:24 Download gff for BS15710.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 632..827 179..374 93   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:51:24 Download gff for BS15710.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 632..827 179..374 93   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:51:24 Download gff for BS15710.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9789367..9789615 97..345 100 <- Minus
2L 9789791..9789887 1..96 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:14:24 Download gff for BS15710.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9789367..9789615 97..345 100 <- Minus
arm_2L 9789791..9789887 1..96 94   Minus

BS15710.complete Sequence

395 bp assembled on 2006-11-29

> BS15710.complete
GAAGTTATCAGTCGACATGGCAAGAATGCTGCTGAAATGGATTCGGAGTC
CGATGACGATGCAGAAATGGAGAATGACAAATCAGTACAACCCCAGGATG
AATACAATTCATAGTTGCGGTTGTATGGGCGTGCGCACCTGCTTGAGCTG
CGAACAGGACTTTCAGGTAGCAAAGAGCTGCCTCGGCGAATCAGTGCTCT
CTTTGATGCCCTACGAAGTTCAACAACCGGGCAAGTACAACTTGGACTTG
GTGGCCAGCTACGAAGATGAACTATTGGCGCCTCTACTGACAGATGACCA
ATTTGCAACTTTTGAGGAAATGGTGCTGCGCATACCTTTGCCAAACCTCT
GCCTAATAGTTTTGTATGGACCAGGGTGAAAGCTTTCTAGACCAT

BS15710.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4036-RB 915 CG4036-PB 558..754 178..374 790 93.4 Plus
CG4036-RA 915 CG4036-PA 558..754 178..374 790 93.4 Plus
CG4036-RB 915 CG4036-PB 1..79 98..176 275 89.9 Plus
CG4036-RA 915 CG4036-PA 1..79 98..176 275 89.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG4036-RB 950 CG4036-RB 579..775 178..374 790 93.4 Plus
CG4036-RA 1002 CG4036-RA 631..827 178..374 790 93.4 Plus
CG4036-RA 1002 CG4036-RA 70..152 94..176 295 90.4 Plus
CG4036-RB 950 CG4036-RB 20..100 96..176 285 90.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9789367..9789617 345..95 1255 100 Minus
2L 23513712 2L 9791527..9791694 178..345 705 94.6 Plus
2L 23513712 2L 9789790..9789870 97..17 405 100 Minus
2L 23513712 2L 9790966..9791048 94..176 295 90.4 Plus
2L 23513712 2L 9790662..9790709 33..80 180 91.7 Plus
Blast to na_te.dros performed on 2014-11-27 14:37:04 has no hits.

BS15710.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:14 Download gff for BS15710.complete
Subject Subject Range Query Range Percent Splice Strand
CG18854-RC 1..363 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:39 Download gff for BS15710.complete
Subject Subject Range Query Range Percent Splice Strand
CG18854-RC 557..947 5..391 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:47 Download gff for BS15710.complete
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 632..831 179..378 92   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:14 Download gff for BS15710.complete
Subject Subject Range Query Range Percent Splice Strand
CG18854-RC 557..947 5..391 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:21 Download gff for BS15710.complete
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 632..831 179..378 92   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:21 Download gff for BS15710.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9789274..9789306 346..378 100 <- Minus
2L 9789367..9789615 97..345 100 <- Minus
2L 9789791..9789870 17..96 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:47 Download gff for BS15710.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9789274..9789306 346..378 100 <- Minus
arm_2L 9789367..9789615 97..345 100 <- Minus
arm_2L 9789791..9789870 17..96 100   Minus

BS15710.pep Sequence

Translation from 16 to 378

> BS15710.pep
MARMLLKWIRSPMTMQKWRMTNQYNPRMNTIHSCGCMGVRTCLSCEQDFQ
VAKSCLGESVLSLMPYEVQQPGKYNLDLVASYEDELLAPLLTDDQFATFE
EMVLRIPLPNLCLIVLYGPG*

BS15710.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:00:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG4036-PB 304 CG4036-PB 183..251 51..119 289 82.6 Plus
CG4036-PA 304 CG4036-PA 183..251 51..119 289 82.6 Plus