Clone Sequence Records
BS15712.3prime Sequence
930 bp (803 high quality bases) assembled on 2006-12-21
> BS15712.3prime
ATGGTCTAGAAAGCTTTTACTTCGGTTGCAGCATTTCGCTGATCCTGCGC
AGGGTCTCCTCTCGATCTCGATGCATCAGTTCCGATACTTGTTCCAAAAA
TTGATGCTGCTGCTCGCGTTGCTGCCGCAAGAAGCTTTCGTTGGTAGTTT
TGATCTGCGCAAGCAGCTGCTTTTGACCTTCTATGATTGCAGTGAGTGCT
TCAATCGGCGTTGGTTCAGCCTCCATCTCGATGGCGTCCACGTAGTCCTC
GCTATCGGCTGCCGCTCTTAGGAGATCGCAGGTGGAGCTGGAGTTGTCGC
TGTCACTTTCCAGCGGAACGCTTGGTTTGCCTGGCGGCTTGAGAAAGGAA
GGCTTGCTGATGCGAATGAGCCTGCTGATGGCACTTTCTCTGTTCTCCCG
CGGCGCCTGAATCAGTTCATCGAAAAGCTCAAAGTGGCGAGGCAGAATGC
GTACATTATCTAGCCCGTGCTCCTTGGCCTCTCGATGACGCTTGCAGAGC
AGCCTTAGTTTATTGCGCAGCTGGTGTGGCGTGCGTTTGATGTCCTGCTT
AGCCAGGATGTTGGAAATGTGCACCAGGGTCTGGAAGTTGCGCTTCCTTG
AGCCATCCAAGGCGCGAAAGAAACCATTGTCCCGAATGATGAGTAGAAAC
GAATCAACCTCTTCGTCTGTCCAAAAGTGCGCTCCGCTTCTCTGTGATGC
ATCACCCTCTTCCTCGTCACTGTCATTGAAATCACTATCGCTTGCGCTGC
TCAGATGGGCTTCCGCTTCAGCATCTGCGGCCGCCTCCTCTTCGGTGGGA
TCCAGGACCAGTCGCATCGCCTCAAAATGCTCGAACGTTTTCCCCGTGCC
GTTCTTTGACCTTGTGGTACATCGCCGCAGCTGCTGGAACTTGATGCGCA
GCTTCTCAGCACCCTTGGGCAGTTGCGTTT
BS15712.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10494-PB | 1335 | CG10494-RB | 496..1335 | 856..17 | 4200 | 100 | Minus |
| CG10494-PA | 1572 | CG10494-RA | 733..1572 | 856..17 | 4200 | 100 | Minus |
| CG10494-PB | 1335 | CG10494-RB | 435..481 | 917..871 | 235 | 100 | Minus |
| CG10494-PA | 1572 | CG10494-RA | 672..718 | 917..871 | 235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10494-RA | 1794 | CG10494-RA | 778..1692 | 930..17 | 4490 | 99.6 | Minus |
| CG10494-RB | 2160 | CG10494-RB | 763..1677 | 930..17 | 4490 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21517257..21517923 | 17..683 | 3335 | 100 | Plus |
| 2R | 25286936 | 2R | 21517981..21518230 | 682..930 | 1090 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:37:17 has no hits.
BS15712.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:35:01 Download gff for
BS15712.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10494-PA | 658..1572 | 17..930 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:14:13 Download gff for
BS15712.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10494-PA | 658..1572 | 17..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 13:04:05 Download gff for
BS15712.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10494-RB | 763..1677 | 17..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:50:37 Download gff for
BS15712.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10494-RB | 763..1677 | 17..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:50:37 Download gff for
BS15712.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21517257..21517921 | 17..681 | 100 | <- | Plus |
| 2R | 21517981..21518230 | 682..930 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 13:04:05 Download gff for
BS15712.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17404762..17405426 | 17..681 | 100 | <- | Plus |
| arm_2R | 17405486..17405735 | 682..930 | 98 | | Plus |
BS15712.5prime Sequence
870 bp (801 high quality bases) assembled on 2006-12-21
> BS15712.5prime
GAAGTTATCAGTCGACATGAGCAAGTTCTCGCTCTTCAATGGCAACGATG
AGGACGAGCACGAAACGGAGCAGAAATACGCACACCTTATGAATCTGGGA
AATGCGAGTCACTCGGTGTCGGAAAATAGTTCTGGGAAAGCGAGTCGCTG
CAAGTGGACCAGCGCAAAGGTGGAGACCTTTCTGGAAATCATTCACCAAC
TTAAACTGCAAGCTGCTCTTCGAAGGCCGCGAAGCAATGCAAAGGTGTTT
CGTATGGTGTCCAGAGAAATGGCCCGGCGGAACTGCCCCAAGAGTCCAAA
GCATCTGAGAGTCAAGTTCCATCAGATGCGGCGTCAGTATGCGAGAGCTC
GGAATGGCGGCGAACCATTCGAGCACTTTGAGGCGGTGCACGAGTTGATG
CAGGGAGAAGATGTATCTGATCTGGATGAAGAGGCGCTAGAGAGTGACAG
CGATATGGAGGCCGACGAGGACCAGTCCGGCATGATCTCAGAAACCGAAG
GGGACGATGCTTTGGATGCCTCAGGATCTTCAGTTAACATCGTCGCCCGC
TGCAAGTGGGCAGAGGGCGAAGTGGACCTCCTCCTAGACCTGATCCACAC
ACTTGGACTGCGAGCAGCTTTGCTGCAAAAGCGCAATGCCAAGGTCTTCA
AGCTGCTGTCCAAGGAGATGGCAAAACGCAACTGCCACAAGGGTGCTGAG
AAGCTGCGCATCAAGTTCCAGCAGCTGCGGCGATTGTACAACAAGGTCAA
GAACGGCACGGGGAAAACGTTCGAGCATTTTGAGGCGATGCGACTGGTCC
TGGATCCCACCGAAGAGGAGGCGGCCGCAGATGCTGAAGCGGAAGCCCAT
CTGAGCAGCGCAGGCGATAG
BS15712.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10494-PA | 1572 | CG10494-RA | 1..854 | 17..870 | 4245 | 99.8 | Plus |
| CG10494-PB | 1335 | CG10494-RB | 1..617 | 254..870 | 3060 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:55:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10494-RA | 1794 | CG10494-RA | 121..974 | 17..870 | 4255 | 99.9 | Plus |
| CG10494-RB | 2160 | CG10494-RB | 102..959 | 17..870 | 4205 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:55:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21518457..21518870 | 506..93 | 2070 | 100 | Minus |
| 2R | 25286936 | 2R | 21518034..21518398 | 870..506 | 1810 | 99.7 | Minus |
| 2R | 25286936 | 2R | 21518930..21519005 | 92..17 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:55:50 has no hits.
BS15712.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:35:02 Download gff for
BS15712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10494-PA | 1..854 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:14:14 Download gff for
BS15712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10494-PA | 1..854 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 23:21:48 Download gff for
BS15712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10494-RA | 112..974 | 9..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:59:36 Download gff for
BS15712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10494-RA | 112..974 | 9..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:59:36 Download gff for
BS15712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21518930..21519014 | 9..92 | 95 | | Minus |
| 2R | 21518034..21518397 | 507..870 | 99 | <- | Minus |
| 2R | 21518457..21518870 | 93..506 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 23:21:48 Download gff for
BS15712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17405539..17405902 | 507..870 | 99 | <- | Minus |
| arm_2R | 17405962..17406375 | 93..506 | 100 | <- | Minus |
| arm_2R | 17406435..17406519 | 9..92 | 95 | | Minus |
BS15712.complete Sequence
1604 bp assembled on 2006-11-29
GenBank Submission: FJ637950
> BS15712.complete
GAAGTTATCAGTCGACATGAGCAAGTTCTCGCTCTTCAATGGCAACGATG
AGGACGAGCACGAAACGGAGCAGAAATACGCACACCTTATGAATCTGGGA
AATGCGAGTCACTCGGTGTCGGAAAATAGTTCTGGGAAAGCGAGTCGCTG
CAAGTGGACCAGCGCAAAGGTGGAGACCTTTCTGGAAATCATTCACCAAC
TTAAACTGCAAGCTGCTCTTCGAAGGCCGCGAAGCAATGCAAAGGTGTTT
CGTATGGTGTCCAGAGAAATGGCCCGGCGGAACTGCCCCAAGAGTCCAAA
GCATCTGAGAGTCAAGTTCCATCAGATGCGGCGTCAGTATGCGAGAGCTC
GGAATGGCGGCGAACCATTCGAGCACTTTGAGGCGGTGCACGAGTTGATG
CAGGGAGAAGATGTATCTGATCTGGATGAAGAGGCGCTAGAGAGTGACAG
CGATATGGAGGCCGACGAGGACCAGTCCGGCATGATCTCAGAAACCGAAG
GGGACGATGCTTTGGATGCCTCAGGATCTTCAGTTAACATCGTCGCCCGC
TGCAAGTGGGCAGAGGGCGAAGTGGACCTCCTCCTAGACCTGATCCACAC
ACTTGGACTGCGAGCAGCTTTGCTGCAAAAGCGCAATGCCAAGGTCTTCA
AGCTGCTGTCCAAGGAGATGGCAAAACGCAACTGCCACAAGGGTGCTGAG
AAGCTGCGCATCAAGTTCCAGCAGCTGCGGCGATTGTACAACAAGGTCAA
GAACGGCACGGGGAAAACGTTCGAGCATTTTGAGGCGATGCGACTGGTCC
TGGATCCCACCGAAGAGGAGGCGGCCGCAGATGCTGAAGCGGAAGCCCAT
CTGAGCAGCGCAAGCGATAGTGATTTCAATGACAGTGACGAGGAAGAGGG
TGATGCATCACAGAGAAGCGGAGCGCACTTTTGGACAGACGAAGAGGTTG
ATTCGTTTCTACTCATCATTCGGGACAATGGTTTCTTTCGCGCCTTGGAT
GGCTCAAGGAAGCGCAACTTCCAGACCCTGGTGCACATTTCCAACATCCT
GGCTAAGCAGGACATCAAACGCACGCCACACCAGCTGCGCAATAAACTAA
GGCTGCTCTGCAAGCGTCATCGAGAGGCCAAGGAGCACGGGCTAGATAAT
GTACGCATTCTGCCTCGCCACTTTGAGCTTTTCGATGAACTGATTCAGGC
GCCGCGGGAGAACAGAGAAAGTGCCATCAGCAGGCTCATTCGCATCAGCA
AGCCTTCCTTTCTCAAGCCGCCAGGCAAACCAAGCGTTCCGCTGGAAAGT
GACAGCGACAACTCCAGCTCCACCTGCGATCTCCTAAGAGCGGCAGCCGA
TAGCGAGGACTACGTGGACGCCATCGAGATGGAGGCTGAACCAACGCCGA
TTGAAGCACTCACTGCAATCATAGAAGGTCAAAAGCAGCTGCTTGCGCAG
ATCAAAACTACCAACGAAAGCTTCTTGCGGCAGCAACGCGAGCAGCAGCA
TCAATTTTTGGAACAAGTATCGGAACTGATGCATCGAGATCGAGAGGAGA
CCCTGCGCAGGATCAGCGAAATGCTGCAACCGAAGTAAAAGCTTTCTAGA
CCAT
BS15712.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:11:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10494-RA | 1572 | CG10494-PA | 1..1572 | 17..1588 | 7860 | 100 | Plus |
| CG10494-RB | 1335 | CG10494-PB | 1..1335 | 254..1588 | 6675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:11:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10494-RA | 1794 | CG10494-RA | 121..1692 | 17..1588 | 7860 | 100 | Plus |
| CG10494-RB | 2160 | CG10494-RB | 102..1677 | 17..1588 | 7785 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:11:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21517257..21517923 | 1588..922 | 3335 | 100 | Minus |
| 2R | 25286936 | 2R | 21517981..21518398 | 923..506 | 2090 | 100 | Minus |
| 2R | 25286936 | 2R | 21518457..21518870 | 506..93 | 2070 | 100 | Minus |
| 2R | 25286936 | 2R | 21518930..21519005 | 92..17 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:11:24 has no hits.
BS15712.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:16 Download gff for
BS15712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10494-RA | 1..1572 | 17..1588 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:41 Download gff for
BS15712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10494-RA | 93..1673 | 9..1588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:04:25 Download gff for
BS15712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10494-RA | 121..1690 | 17..1586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:16 Download gff for
BS15712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10494-RA | 93..1673 | 9..1588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:50 Download gff for
BS15712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10494-RA | 121..1690 | 17..1586 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:50 Download gff for
BS15712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21517259..21517921 | 924..1586 | 100 | <- | Minus |
| 2R | 21517981..21518397 | 507..923 | 100 | <- | Minus |
| 2R | 21518457..21518870 | 93..506 | 100 | <- | Minus |
| 2R | 21518930..21519005 | 17..92 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:04:25 Download gff for
BS15712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17404764..17405426 | 924..1586 | 100 | <- | Minus |
| arm_2R | 17405486..17405902 | 507..923 | 100 | <- | Minus |
| arm_2R | 17405962..17406375 | 93..506 | 100 | <- | Minus |
| arm_2R | 17406435..17406510 | 17..92 | 100 | | Minus |
BS15712.pep Sequence
Translation from 16 to 1587
> BS15712.pep
MSKFSLFNGNDEDEHETEQKYAHLMNLGNASHSVSENSSGKASRCKWTSA
KVETFLEIIHQLKLQAALRRPRSNAKVFRMVSREMARRNCPKSPKHLRVK
FHQMRRQYARARNGGEPFEHFEAVHELMQGEDVSDLDEEALESDSDMEAD
EDQSGMISETEGDDALDASGSSVNIVARCKWAEGEVDLLLDLIHTLGLRA
ALLQKRNAKVFKLLSKEMAKRNCHKGAEKLRIKFQQLRRLYNKVKNGTGK
TFEHFEAMRLVLDPTEEEAAADAEAEAHLSSASDSDFNDSDEEEGDASQR
SGAHFWTDEEVDSFLLIIRDNGFFRALDGSRKRNFQTLVHISNILAKQDI
KRTPHQLRNKLRLLCKRHREAKEHGLDNVRILPRHFELFDELIQAPRENR
ESAISRLIRISKPSFLKPPGKPSVPLESDSDNSSSTCDLLRAAADSEDYV
DAIEMEAEPTPIEALTAIIEGQKQLLAQIKTTNESFLRQQREQQHQFLEQ
VSELMHRDREETLRRISEMLQPK*
BS15712.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10494-PA | 523 | CG10494-PA | 1..523 | 1..523 | 2672 | 100 | Plus |
| CG10494-PB | 444 | CG10494-PB | 1..444 | 80..523 | 2265 | 100 | Plus |
| CG10494-PB | 444 | CG10494-PB | 83..324 | 28..271 | 298 | 34.8 | Plus |
