Clone BS15718 Report

Search the DGRC for BS15718

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:157
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptLcp65Ad-RA
Protein status:BS15718.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15718.3prime Sequence

357 bp (357 high quality bases) assembled on 2006-12-21

> BS15718.3prime
ATGGTCTAGAAAGCTTTCACCTTTCGGGGCTGGGCAGATGGGCACCCTCG
GGCTGGAAGCCGTTCTCATCGGCCAGGTACTGAATGCTGTAGGTCTGACC
ATCGTCACCGACATAGGCATAGGATCCGCGGACAACAATTGCTTCGTGAT
CGGTGCCCACGTCCTTCAGCTGGCCTTCCTCCTGATGCGACTTTCCGTCG
CTCGTCTCCACGGCAAACTTGTAGCCCTCGGGCAGGACATCGCTGTCGAA
GCGCAGCACCTGAGCATCCTGCTGGATGGCTGGAGGAGCGGCCAGTGAGC
AGGCAAGGATACAGGTGAAGGCGATGGCAATAGTGAATTTCATGTCGACT
GATAACT

BS15718.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6955-PA 327 Lcp65Ad-RA 1..314 343..30 1570 100 Minus
CG6956-PA 330 Lcp65Ac-RA 274..310 67..31 160 97.2 Minus
CG18777-PA 309 CG18777-RA 248..291 75..32 145 93.1 Minus
CG10529-PA 300 Lcp65Ae-RA 247..284 73..36 140 94.7 Minus
CG8511-PA 405 CG8511-RA 347..389 75..33 140 93 Minus
CG18779-PA 318 CG18779-RA 259..300 73..32 135 92.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ad-RB 616 CG6955-RB 75..393 343..25 1580 99.7 Minus
Lcp65Ad-RA 521 CG6955-RA 75..393 343..25 1580 99.7 Minus
Lcp65Ac-RA 505 CG6956-RA 191..402 242..31 400 79.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6143691..6143878 212..25 925 99.5 Minus
3L 28110227 3L 6143469..6143599 343..213 655 100 Minus
3L 28110227 3L 6145111..6145290 210..31 330 78.9 Minus
3L 28110227 3L 6147581..6147652 32..103 195 84.7 Plus
3L 28110227 3L 6150452..6150523 32..103 195 84.7 Plus
3L 28110227 3L 6152286..6152359 31..104 190 83.8 Plus
Blast to na_te.dros performed on 2015-01-30 16:57:16 has no hits.

BS15718.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:35:14 Download gff for BS15718.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6955-PA 1..327 17..343 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:14:30 Download gff for BS15718.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6955-PA 1..327 17..343 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 15:55:14 Download gff for BS15718.3prime
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 75..402 16..343 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:11:59 Download gff for BS15718.3prime
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 75..402 16..343 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:11:59 Download gff for BS15718.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6143469..6143599 213..343 100 -> Minus
3L 6143691..6143887 16..212 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 15:55:14 Download gff for BS15718.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6136569..6136699 213..343 100 -> Minus
arm_3L 6136791..6136987 16..212 97   Minus

BS15718.5prime Sequence

357 bp (357 high quality bases) assembled on 2006-12-21

> BS15718.5prime
GAAGTTATCATTCGACATGAAATTCACTATTGCCATCGCCTTCACCTGTA
TCCTTGCCTGCTCACTGGCCGCTCCTCCAGCCATCCAGCAGGATGCTCAG
GTGCTGCGCTTCGACAGCGATGTCCTGCCCGAGGGCTACAAGTTTGCCGT
GGAGACGAGCGACGGAAAGTCGCATCAGGAGGAAGGCCAGCTGAAGGACG
TGGGCACCGATCACGAAGCAATTGTTGTCCGCGGATCCTATGCCTATGTC
GGTGACGATGGTCAGACCTACAGCATTCAGTACCTGGCCGATGAGAACGG
CTTCCAGCCCGAGGGTGCCCATCTGCCCAGGCCCGTTCAGTGAAAGCTTT
CTAGACC

BS15718.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG6955-PA 327 Lcp65Ad-RA 1..327 17..343 1635 100 Plus
CG6956-PA 330 Lcp65Ac-RA 274..310 293..329 160 97.2 Plus
CG18777-PA 309 CG18777-RA 248..291 285..328 145 93.1 Plus
CG10529-PA 300 Lcp65Ae-RA 247..284 287..324 140 94.7 Plus
CG8511-PA 405 CG8511-RA 347..389 285..327 140 93 Plus
CG18779-PA 318 CG18779-RA 259..300 287..328 135 92.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:49
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ad-RB 616 CG6955-RB 75..402 17..344 1640 100 Plus
Lcp65Ad-RA 521 CG6955-RA 75..402 17..344 1640 100 Plus
Lcp65Ac-RA 505 CG6956-RA 191..402 118..329 400 79.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6143691..6143887 148..344 985 100 Plus
3L 28110227 3L 6143469..6143599 17..147 655 100 Plus
3L 28110227 3L 6145111..6145290 150..329 330 78.9 Plus
3L 28110227 3L 6147581..6147652 328..257 195 84.7 Minus
3L 28110227 3L 6150452..6150523 328..257 195 84.7 Minus
3L 28110227 3L 6152286..6152359 329..256 190 83.8 Minus
Blast to na_te.dros performed on 2015-02-10 18:03:46 has no hits.

BS15718.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:35:15 Download gff for BS15718.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6955-PA 1..327 17..343 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:14:31 Download gff for BS15718.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6955-PA 1..327 17..343 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 18:38:59 Download gff for BS15718.5prime
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 75..402 17..344 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:14:14 Download gff for BS15718.5prime
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 75..402 17..344 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:14:14 Download gff for BS15718.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6143469..6143599 17..147 100 -> Plus
3L 6143691..6143887 148..344 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 18:38:59 Download gff for BS15718.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6136569..6136699 17..147 100 -> Plus
arm_3L 6136791..6136987 148..344 100   Plus

BS15718.complete Sequence

359 bp assembled on 2006-11-29

GenBank Submission: FJ637951

> BS15718.complete
GAAGTTATCAGTCGACATGAAATTCACTATTGCCATCGCCTTCACCTGTA
TCCTTGCCTGCTCACTGGCCGCTCCTCCAGCCATCCAGCAGGATGCTCAG
GTGCTGCGCTTCGACAGCGATGTCCTGCCCGAGGGCTACAAGTTTGCCGT
GGAGACGAGCGACGGAAAGTCGCATCAGGAGGAAGGCCAGCTGAAGGACG
TGGGCACCGATCACGAAGCAATTGTTGTCCGCGGATCCTATGCCTATGTC
GGTGACGATGGTCAGACCTACAGCATTCAGTACCTGGCCGATGAGAACGG
CTTCCAGCCCGAGGGTGCCCATCTGCCCAGGCCCGTTCAGTGAAAGCTTT
CTAGACCAT

BS15718.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:11
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ad-RB 327 CG6955-PB 1..327 17..343 1635 100 Plus
Lcp65Ad-RA 327 CG6955-PA 1..327 17..343 1635 100 Plus
Lcp65Ac-RA 330 CG6956-PA 99..310 118..329 400 79.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ad-RB 616 CG6955-RB 75..402 17..344 1640 100 Plus
Lcp65Ad-RA 521 CG6955-RA 75..402 17..344 1640 100 Plus
Lcp65Ac-RA 505 CG6956-RA 191..402 118..329 400 79.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6143691..6143887 148..344 985 100 Plus
3L 28110227 3L 6143469..6143599 17..147 655 100 Plus
3L 28110227 3L 6145111..6145290 150..329 330 78.9 Plus
3L 28110227 3L 6147581..6147652 328..257 195 84.7 Minus
3L 28110227 3L 6150452..6150523 328..257 195 84.7 Minus
3L 28110227 3L 6152286..6152359 329..256 190 83.8 Minus
Blast to na_te.dros performed on 2014-11-27 14:37:10 has no hits.

BS15718.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:17 Download gff for BS15718.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 1..327 17..343 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:42 Download gff for BS15718.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 63..390 17..344 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:50 Download gff for BS15718.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 75..400 17..342 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:17 Download gff for BS15718.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 63..390 17..344 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:22 Download gff for BS15718.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 75..400 17..342 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:22 Download gff for BS15718.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6143469..6143599 17..147 100 -> Plus
3L 6143691..6143885 148..342 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:50 Download gff for BS15718.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6136569..6136699 17..147 100 -> Plus
arm_3L 6136791..6136985 148..342 100   Plus

BS15718.pep Sequence

Translation from 16 to 342

> BS15718.pep
MKFTIAIAFTCILACSLAAPPAIQQDAQVLRFDSDVLPEGYKFAVETSDG
KSHQEEGQLKDVGTDHEAIVVRGSYAYVGDDGQTYSIQYLADENGFQPEG
AHLPRPVQ*

BS15718.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:47
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ad-PB 108 CG6955-PB 1..108 1..108 564 100 Plus
Lcp65Ad-PA 108 CG6955-PA 1..108 1..108 564 100 Plus
Lcp65Ac-PA 109 CG6956-PA 1..103 1..104 382 69.2 Plus
Lcp65Ag3-PA 105 CG18779-PA 1..100 1..104 290 54.8 Plus
Lcp65Ag1-PA 105 CG10530-PA 1..100 1..104 287 53.8 Plus