Clone Sequence Records
BS15718.3prime Sequence
357 bp (357 high quality bases) assembled on 2006-12-21
> BS15718.3prime
ATGGTCTAGAAAGCTTTCACCTTTCGGGGCTGGGCAGATGGGCACCCTCG
GGCTGGAAGCCGTTCTCATCGGCCAGGTACTGAATGCTGTAGGTCTGACC
ATCGTCACCGACATAGGCATAGGATCCGCGGACAACAATTGCTTCGTGAT
CGGTGCCCACGTCCTTCAGCTGGCCTTCCTCCTGATGCGACTTTCCGTCG
CTCGTCTCCACGGCAAACTTGTAGCCCTCGGGCAGGACATCGCTGTCGAA
GCGCAGCACCTGAGCATCCTGCTGGATGGCTGGAGGAGCGGCCAGTGAGC
AGGCAAGGATACAGGTGAAGGCGATGGCAATAGTGAATTTCATGTCGACT
GATAACT
BS15718.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6955-PA | 327 | Lcp65Ad-RA | 1..314 | 343..30 | 1570 | 100 | Minus |
CG6956-PA | 330 | Lcp65Ac-RA | 274..310 | 67..31 | 160 | 97.2 | Minus |
CG18777-PA | 309 | CG18777-RA | 248..291 | 75..32 | 145 | 93.1 | Minus |
CG10529-PA | 300 | Lcp65Ae-RA | 247..284 | 73..36 | 140 | 94.7 | Minus |
CG8511-PA | 405 | CG8511-RA | 347..389 | 75..33 | 140 | 93 | Minus |
CG18779-PA | 318 | CG18779-RA | 259..300 | 73..32 | 135 | 92.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:57:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp65Ad-RB | 616 | CG6955-RB | 75..393 | 343..25 | 1580 | 99.7 | Minus |
Lcp65Ad-RA | 521 | CG6955-RA | 75..393 | 343..25 | 1580 | 99.7 | Minus |
Lcp65Ac-RA | 505 | CG6956-RA | 191..402 | 242..31 | 400 | 79.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:57:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6143691..6143878 | 212..25 | 925 | 99.5 | Minus |
3L | 28110227 | 3L | 6143469..6143599 | 343..213 | 655 | 100 | Minus |
3L | 28110227 | 3L | 6145111..6145290 | 210..31 | 330 | 78.9 | Minus |
3L | 28110227 | 3L | 6147581..6147652 | 32..103 | 195 | 84.7 | Plus |
3L | 28110227 | 3L | 6150452..6150523 | 32..103 | 195 | 84.7 | Plus |
3L | 28110227 | 3L | 6152286..6152359 | 31..104 | 190 | 83.8 | Plus |
Blast to na_te.dros performed on 2015-01-30 16:57:16 has no hits.
BS15718.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:35:14 Download gff for
BS15718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6955-PA | 1..327 | 17..343 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:14:30 Download gff for
BS15718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6955-PA | 1..327 | 17..343 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 15:55:14 Download gff for
BS15718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ad-RA | 75..402 | 16..343 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:11:59 Download gff for
BS15718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ad-RA | 75..402 | 16..343 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:11:59 Download gff for
BS15718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6143469..6143599 | 213..343 | 100 | -> | Minus |
3L | 6143691..6143887 | 16..212 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 15:55:14 Download gff for
BS15718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6136569..6136699 | 213..343 | 100 | -> | Minus |
arm_3L | 6136791..6136987 | 16..212 | 97 | | Minus |
BS15718.5prime Sequence
357 bp (357 high quality bases) assembled on 2006-12-21
> BS15718.5prime
GAAGTTATCATTCGACATGAAATTCACTATTGCCATCGCCTTCACCTGTA
TCCTTGCCTGCTCACTGGCCGCTCCTCCAGCCATCCAGCAGGATGCTCAG
GTGCTGCGCTTCGACAGCGATGTCCTGCCCGAGGGCTACAAGTTTGCCGT
GGAGACGAGCGACGGAAAGTCGCATCAGGAGGAAGGCCAGCTGAAGGACG
TGGGCACCGATCACGAAGCAATTGTTGTCCGCGGATCCTATGCCTATGTC
GGTGACGATGGTCAGACCTACAGCATTCAGTACCTGGCCGATGAGAACGG
CTTCCAGCCCGAGGGTGCCCATCTGCCCAGGCCCGTTCAGTGAAAGCTTT
CTAGACC
BS15718.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6955-PA | 327 | Lcp65Ad-RA | 1..327 | 17..343 | 1635 | 100 | Plus |
CG6956-PA | 330 | Lcp65Ac-RA | 274..310 | 293..329 | 160 | 97.2 | Plus |
CG18777-PA | 309 | CG18777-RA | 248..291 | 285..328 | 145 | 93.1 | Plus |
CG10529-PA | 300 | Lcp65Ae-RA | 247..284 | 287..324 | 140 | 94.7 | Plus |
CG8511-PA | 405 | CG8511-RA | 347..389 | 285..327 | 140 | 93 | Plus |
CG18779-PA | 318 | CG18779-RA | 259..300 | 287..328 | 135 | 92.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp65Ad-RB | 616 | CG6955-RB | 75..402 | 17..344 | 1640 | 100 | Plus |
Lcp65Ad-RA | 521 | CG6955-RA | 75..402 | 17..344 | 1640 | 100 | Plus |
Lcp65Ac-RA | 505 | CG6956-RA | 191..402 | 118..329 | 400 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6143691..6143887 | 148..344 | 985 | 100 | Plus |
3L | 28110227 | 3L | 6143469..6143599 | 17..147 | 655 | 100 | Plus |
3L | 28110227 | 3L | 6145111..6145290 | 150..329 | 330 | 78.9 | Plus |
3L | 28110227 | 3L | 6147581..6147652 | 328..257 | 195 | 84.7 | Minus |
3L | 28110227 | 3L | 6150452..6150523 | 328..257 | 195 | 84.7 | Minus |
3L | 28110227 | 3L | 6152286..6152359 | 329..256 | 190 | 83.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:03:46 has no hits.
BS15718.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:35:15 Download gff for
BS15718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6955-PA | 1..327 | 17..343 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:14:31 Download gff for
BS15718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6955-PA | 1..327 | 17..343 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 18:38:59 Download gff for
BS15718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ad-RA | 75..402 | 17..344 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:14:14 Download gff for
BS15718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ad-RA | 75..402 | 17..344 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:14:14 Download gff for
BS15718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6143469..6143599 | 17..147 | 100 | -> | Plus |
3L | 6143691..6143887 | 148..344 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 18:38:59 Download gff for
BS15718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6136569..6136699 | 17..147 | 100 | -> | Plus |
arm_3L | 6136791..6136987 | 148..344 | 100 | | Plus |
BS15718.complete Sequence
359 bp assembled on 2006-11-29
GenBank Submission: FJ637951
> BS15718.complete
GAAGTTATCAGTCGACATGAAATTCACTATTGCCATCGCCTTCACCTGTA
TCCTTGCCTGCTCACTGGCCGCTCCTCCAGCCATCCAGCAGGATGCTCAG
GTGCTGCGCTTCGACAGCGATGTCCTGCCCGAGGGCTACAAGTTTGCCGT
GGAGACGAGCGACGGAAAGTCGCATCAGGAGGAAGGCCAGCTGAAGGACG
TGGGCACCGATCACGAAGCAATTGTTGTCCGCGGATCCTATGCCTATGTC
GGTGACGATGGTCAGACCTACAGCATTCAGTACCTGGCCGATGAGAACGG
CTTCCAGCCCGAGGGTGCCCATCTGCCCAGGCCCGTTCAGTGAAAGCTTT
CTAGACCAT
BS15718.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp65Ad-RB | 327 | CG6955-PB | 1..327 | 17..343 | 1635 | 100 | Plus |
Lcp65Ad-RA | 327 | CG6955-PA | 1..327 | 17..343 | 1635 | 100 | Plus |
Lcp65Ac-RA | 330 | CG6956-PA | 99..310 | 118..329 | 400 | 79.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp65Ad-RB | 616 | CG6955-RB | 75..402 | 17..344 | 1640 | 100 | Plus |
Lcp65Ad-RA | 521 | CG6955-RA | 75..402 | 17..344 | 1640 | 100 | Plus |
Lcp65Ac-RA | 505 | CG6956-RA | 191..402 | 118..329 | 400 | 79.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:37:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6143691..6143887 | 148..344 | 985 | 100 | Plus |
3L | 28110227 | 3L | 6143469..6143599 | 17..147 | 655 | 100 | Plus |
3L | 28110227 | 3L | 6145111..6145290 | 150..329 | 330 | 78.9 | Plus |
3L | 28110227 | 3L | 6147581..6147652 | 328..257 | 195 | 84.7 | Minus |
3L | 28110227 | 3L | 6150452..6150523 | 328..257 | 195 | 84.7 | Minus |
3L | 28110227 | 3L | 6152286..6152359 | 329..256 | 190 | 83.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:37:10 has no hits.
BS15718.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:17 Download gff for
BS15718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ad-RA | 1..327 | 17..343 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:42 Download gff for
BS15718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ad-RA | 63..390 | 17..344 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:50 Download gff for
BS15718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ad-RA | 75..400 | 17..342 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:17 Download gff for
BS15718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ad-RA | 63..390 | 17..344 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:22 Download gff for
BS15718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ad-RA | 75..400 | 17..342 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:22 Download gff for
BS15718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6143469..6143599 | 17..147 | 100 | -> | Plus |
3L | 6143691..6143885 | 148..342 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:50 Download gff for
BS15718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6136569..6136699 | 17..147 | 100 | -> | Plus |
arm_3L | 6136791..6136985 | 148..342 | 100 | | Plus |
BS15718.pep Sequence
Translation from 16 to 342
> BS15718.pep
MKFTIAIAFTCILACSLAAPPAIQQDAQVLRFDSDVLPEGYKFAVETSDG
KSHQEEGQLKDVGTDHEAIVVRGSYAYVGDDGQTYSIQYLADENGFQPEG
AHLPRPVQ*
BS15718.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp65Ad-PB | 108 | CG6955-PB | 1..108 | 1..108 | 564 | 100 | Plus |
Lcp65Ad-PA | 108 | CG6955-PA | 1..108 | 1..108 | 564 | 100 | Plus |
Lcp65Ac-PA | 109 | CG6956-PA | 1..103 | 1..104 | 382 | 69.2 | Plus |
Lcp65Ag3-PA | 105 | CG18779-PA | 1..100 | 1..104 | 290 | 54.8 | Plus |
Lcp65Ag1-PA | 105 | CG10530-PA | 1..100 | 1..104 | 287 | 53.8 | Plus |