Clone Sequence Records
BS15719.3prime Sequence
714 bp (714 high quality bases) assembled on 2006-12-21
> BS15719.3prime
ATGGTCTAGAAAGCTTTCACTTTGTGGAGGAGCCGTTGCCAAACATCCGT
CCGCTGTGCGATTTTCTGGAATACTTTGGACGGATGATGTCCTTGAAAGT
GAATGCGGATGCGAGTGGAGGCTTTTCCGAATTGCTCGTGGAGTCCGGAC
CCTGTCCTTGTGAGGAAGACAGCGTCGCATAAGCTGCATTCCTGCTGGTT
GGAAGTCCATCGAGATATTTTAGCTGGGGAAGCACCTGTAGTATATACTC
GCGGGGTCCTTGGCCCCCGAAAACTGTGCGGATGCCAGGATTCCCCATGC
AAGAGAGCTGATCCAGCGCAGGACAGTGCCGTTCGATGCGGTGTATCCAA
TCGGTTATATTTGCTATATCGCAATTGTTGATCCACAAGATCCTTAAGCT
CGGCAAATAAGGAAAAGTGTTTATGTCCAGGTTTACGTTGCGGTCCAGGA
TTAAAGTGTCCAGATCCTCGAAAAAGGAGAGAAATCTCAAGTTTCGGAAA
TCATTGTGACTCAAATCGAGAAACTTGGTCTGCGCTGCGAATTTGTCGGC
CAGTCGCCGCGGAATTGTCTTCAGGTTCTCATAGGCCAGCGAAATGCGTC
CGTTGTCCTCTAGGATGCTTTCCGAAAATGATACATCTTCACTTGGACAA
CTGCTGATGGAAATGTTGCCACTAAAGGAATACGGATTCGGCGTAATCAT
GTCGACTGATAACT
BS15719.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31274-PA | 684 | CG31274-RA | 1..680 | 700..21 | 3400 | 100 | Minus |
CG31274-PB | 843 | CG31274-RB | 160..839 | 700..21 | 3400 | 100 | Minus |
CG31447-PA | 843 | MESK4-RA | 160..839 | 700..21 | 3400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:11:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31274-RB | 1399 | CG31274-RB | 281..965 | 700..16 | 3410 | 99.9 | Minus |
MESK4-RB | 1488 | CG31447-RB | 271..955 | 700..16 | 3410 | 99.9 | Minus |
MESK4-RA | 1390 | CG31447-RA | 271..955 | 700..16 | 3410 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 14:11:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16989518..16989886 | 384..16 | 1830 | 99.7 | Minus |
3R | 32079331 | 3R | 16993730..16994098 | 384..16 | 1830 | 99.7 | Minus |
3R | 32079331 | 3R | 16989138..16989455 | 700..383 | 1590 | 100 | Minus |
3R | 32079331 | 3R | 16993350..16993667 | 700..383 | 1590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 14:11:34 has no hits.
BS15719.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:35:16 Download gff for
BS15719.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31274-PA | 1..684 | 17..700 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:14:33 Download gff for
BS15719.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31447-PA | 160..843 | 17..700 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:15:15 Download gff for
BS15719.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK4-RB | 271..955 | 16..700 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:52:04 Download gff for
BS15719.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK4-RA | 271..955 | 16..700 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:52:04 Download gff for
BS15719.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16989519..16989886 | 14..383 | 99 | -> | Minus |
3R | 16989138..16989454 | 384..700 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:15:15 Download gff for
BS15719.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12814860..12815176 | 384..700 | 100 | -> | Minus |
arm_3R | 12815241..12815608 | 14..383 | 99 | -> | Minus |
BS15719.5prime Sequence
714 bp (714 high quality bases) assembled on 2006-12-21
> BS15719.5prime
GAAGTTATCAGTCGACATGATTACGCCGAATCCGTATTCCTTTAGTGGCA
ACATTTCCATCAGCAGTTGTCCAAGTGAAGATGTATCATTTTCGGAAAGC
ATCCTAGAGGACAACGGACGCATTTCGCTGGCCTATGAGAACCTGAAGAC
AATTCCGCGGCGACTGGCCGACAAATTCGCAGCGCAGACCAAGTTTCTCG
ATTTGAGTCACAATGATTTCCGAAACTTGAGATTTCTCTCCTTTTTCGAG
GATCTGGACACTTTAATCCTGGACCGCAACGTAAACCTGGACATAAACAC
TTTTCCTTATTTGCCGAGCTTAAGGATCTTGTGGATCAACAATTGCGATA
TAGCAAATATAACCGATTGGATACACCGCATCGAACGGCACTGTCCTGCG
CTGGATCAGCTCTCTTGCATGGGGAATCCTGGCATCCGCACAGTTTTCGG
GGGCCAAGGACCCCGCGAGTATATACTACAGGTGCTTCCCCAGCTAAAAT
ATCTCGATGGACTTCCAACCAGCAGGAATGCAGCTTATGCGACGCTGTCT
TCCTCACAAGGACAGGGTCCGGACTCCACGAGCAATTCGGAAAAGCCTCC
ACTCGCATCCGCATTCACTTTCAAGGACATCATCCGTCCAAAGTATTCCA
GAAAATCGCACAGCGGACGGATGTTTGGCAACGGCTCCTCCACAAACTGA
AAGCTTTCTAGACC
BS15719.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31274-PA | 684 | CG31274-RA | 1..684 | 17..700 | 3420 | 100 | Plus |
CG31274-PB | 843 | CG31274-RB | 160..843 | 17..700 | 3420 | 100 | Plus |
CG31447-PA | 843 | MESK4-RA | 160..843 | 17..700 | 3420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 04:16:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31274-RB | 1399 | CG31274-RB | 281..965 | 17..701 | 3425 | 100 | Plus |
MESK4-RB | 1488 | CG31447-RB | 271..955 | 17..701 | 3425 | 100 | Plus |
MESK4-RA | 1390 | CG31447-RA | 271..955 | 17..701 | 3425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 04:16:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16989518..16989886 | 333..701 | 1845 | 100 | Plus |
3R | 32079331 | 3R | 16993730..16994098 | 333..701 | 1845 | 100 | Plus |
3R | 32079331 | 3R | 16989138..16989455 | 17..334 | 1590 | 100 | Plus |
3R | 32079331 | 3R | 16993350..16993667 | 17..334 | 1590 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 04:16:53 has no hits.
BS15719.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:35:18 Download gff for
BS15719.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31274-PA | 1..684 | 17..700 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:14:34 Download gff for
BS15719.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31447-PA | 160..843 | 17..700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 20:55:42 Download gff for
BS15719.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK4-RB | 271..955 | 17..701 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 05:27:37 Download gff for
BS15719.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK4-RA | 271..955 | 17..701 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 05:27:37 Download gff for
BS15719.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16989138..16989454 | 17..333 | 100 | -> | Plus |
3R | 16989519..16989886 | 334..701 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 20:55:42 Download gff for
BS15719.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12814860..12815176 | 17..333 | 100 | -> | Plus |
arm_3R | 12815241..12815608 | 334..701 | 100 | | Plus |
BS15719.complete Sequence
716 bp assembled on 2006-11-29
GenBank Submission: FJ637952
> BS15719.complete
GAAGTTATCAGTCGACATGATTACGCCGAATCCGTATTCCTTTAGTGGCA
ACATTTCCATCAGCAGTTGTCCAAGTGAAGATGTATCATTTTCGGAAAGC
ATCCTAGAGGACAACGGACGCATTTCGCTGGCCTATGAGAACCTGAAGAC
AATTCCGCGGCGACTGGCCGACAAATTCGCAGCGCAGACCAAGTTTCTCG
ATTTGAGTCACAATGATTTCCGAAACTTGAGATTTCTCTCCTTTTTCGAG
GATCTGGACACTTTAATCCTGGACCGCAACGTAAACCTGGACATAAACAC
TTTTCCTTATTTGCCGAGCTTAAGGATCTTGTGGATCAACAATTGCGATA
TAGCAAATATAACCGATTGGATACACCGCATCGAACGGCACTGTCCTGCG
CTGGATCAGCTCTCTTGCATGGGGAATCCTGGCATCCGCACAGTTTTCGG
GGGCCAAGGACCCCGCGAGTATATACTACAGGTGCTTCCCCAGCTAAAAT
ATCTCGATGGACTTCCAACCAGCAGGAATGCAGCTTATGCGACGCTGTCT
TCCTCACAAGGACAGGGTCCGGACTCCACGAGCAATTCGGAAAAGCCTCC
ACTCGCATCCGCATTCACTTTCAAGGACATCATCCGTCCAAAGTATTCCA
GAAAATCGCACAGCGGACGGATGTTTGGCAACGGCTCCTCCACAAACTGA
AAGCTTTCTAGACCAT
BS15719.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:02:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31274-RB | 843 | CG31274-PB | 160..843 | 17..700 | 3420 | 100 | Plus |
MESK4-RB | 843 | CG31447-PB | 160..843 | 17..700 | 3420 | 100 | Plus |
MESK4-RA | 843 | CG31447-PA | 160..843 | 17..700 | 3420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31274-RB | 1399 | CG31274-RB | 281..965 | 17..701 | 3425 | 100 | Plus |
MESK4-RB | 1488 | CG31447-RB | 271..955 | 17..701 | 3425 | 100 | Plus |
MESK4-RA | 1390 | CG31447-RA | 271..955 | 17..701 | 3425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16989518..16989886 | 333..701 | 1845 | 100 | Plus |
3R | 32079331 | 3R | 16993730..16994098 | 333..701 | 1845 | 100 | Plus |
3R | 32079331 | 3R | 16989138..16989455 | 17..334 | 1590 | 100 | Plus |
3R | 32079331 | 3R | 16993350..16993667 | 17..334 | 1590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:02:05 has no hits.
BS15719.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:18 Download gff for
BS15719.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31274-RB | 160..843 | 17..700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:44 Download gff for
BS15719.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31274-RB | 160..844 | 17..701 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:50 Download gff for
BS15719.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK4-RB | 271..953 | 17..699 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:18 Download gff for
BS15719.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31274-RB | 160..844 | 17..701 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:48 Download gff for
BS15719.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK4-RA | 271..953 | 17..699 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:48 Download gff for
BS15719.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16989138..16989454 | 17..333 | 100 | -> | Plus |
3R | 16989519..16989884 | 334..699 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:50 Download gff for
BS15719.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12814860..12815176 | 17..333 | 100 | -> | Plus |
arm_3R | 12815241..12815606 | 334..699 | 100 | | Plus |
BS15719.pep Sequence
Translation from 16 to 699
> BS15719.pep
MITPNPYSFSGNISISSCPSEDVSFSESILEDNGRISLAYENLKTIPRRL
ADKFAAQTKFLDLSHNDFRNLRFLSFFEDLDTLILDRNVNLDINTFPYLP
SLRILWINNCDIANITDWIHRIERHCPALDQLSCMGNPGIRTVFGGQGPR
EYILQVLPQLKYLDGLPTSRNAAYATLSSSQGQGPDSTSNSEKPPLASAF
TFKDIIRPKYSRKSHSGRMFGNGSSTN*
BS15719.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31274-PB | 280 | CG31274-PB | 54..280 | 1..227 | 1193 | 100 | Plus |
MESK4-PB | 280 | CG31447-PB | 54..280 | 1..227 | 1193 | 100 | Plus |
MESK4-PA | 280 | CG31447-PA | 54..280 | 1..227 | 1193 | 100 | Plus |
CG31076-PB | 182 | CG31076-PB | 7..153 | 32..164 | 162 | 32.4 | Plus |