Clone BS15719 Report

Search the DGRC for BS15719

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:157
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCG31274-RA
Protein status:BS15719.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15719.3prime Sequence

714 bp (714 high quality bases) assembled on 2006-12-21

> BS15719.3prime
ATGGTCTAGAAAGCTTTCACTTTGTGGAGGAGCCGTTGCCAAACATCCGT
CCGCTGTGCGATTTTCTGGAATACTTTGGACGGATGATGTCCTTGAAAGT
GAATGCGGATGCGAGTGGAGGCTTTTCCGAATTGCTCGTGGAGTCCGGAC
CCTGTCCTTGTGAGGAAGACAGCGTCGCATAAGCTGCATTCCTGCTGGTT
GGAAGTCCATCGAGATATTTTAGCTGGGGAAGCACCTGTAGTATATACTC
GCGGGGTCCTTGGCCCCCGAAAACTGTGCGGATGCCAGGATTCCCCATGC
AAGAGAGCTGATCCAGCGCAGGACAGTGCCGTTCGATGCGGTGTATCCAA
TCGGTTATATTTGCTATATCGCAATTGTTGATCCACAAGATCCTTAAGCT
CGGCAAATAAGGAAAAGTGTTTATGTCCAGGTTTACGTTGCGGTCCAGGA
TTAAAGTGTCCAGATCCTCGAAAAAGGAGAGAAATCTCAAGTTTCGGAAA
TCATTGTGACTCAAATCGAGAAACTTGGTCTGCGCTGCGAATTTGTCGGC
CAGTCGCCGCGGAATTGTCTTCAGGTTCTCATAGGCCAGCGAAATGCGTC
CGTTGTCCTCTAGGATGCTTTCCGAAAATGATACATCTTCACTTGGACAA
CTGCTGATGGAAATGTTGCCACTAAAGGAATACGGATTCGGCGTAATCAT
GTCGACTGATAACT

BS15719.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG31274-PA 684 CG31274-RA 1..680 700..21 3400 100 Minus
CG31274-PB 843 CG31274-RB 160..839 700..21 3400 100 Minus
CG31447-PA 843 MESK4-RA 160..839 700..21 3400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG31274-RB 1399 CG31274-RB 281..965 700..16 3410 99.9 Minus
MESK4-RB 1488 CG31447-RB 271..955 700..16 3410 99.9 Minus
MESK4-RA 1390 CG31447-RA 271..955 700..16 3410 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 14:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16989518..16989886 384..16 1830 99.7 Minus
3R 32079331 3R 16993730..16994098 384..16 1830 99.7 Minus
3R 32079331 3R 16989138..16989455 700..383 1590 100 Minus
3R 32079331 3R 16993350..16993667 700..383 1590 100 Minus
Blast to na_te.dros performed on 2015-02-02 14:11:34 has no hits.

BS15719.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:35:16 Download gff for BS15719.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31274-PA 1..684 17..700 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:14:33 Download gff for BS15719.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31447-PA 160..843 17..700 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:15:15 Download gff for BS15719.3prime
Subject Subject Range Query Range Percent Splice Strand
MESK4-RB 271..955 16..700 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:52:04 Download gff for BS15719.3prime
Subject Subject Range Query Range Percent Splice Strand
MESK4-RA 271..955 16..700 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:52:04 Download gff for BS15719.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16989519..16989886 14..383 99 -> Minus
3R 16989138..16989454 384..700 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:15:15 Download gff for BS15719.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12814860..12815176 384..700 100 -> Minus
arm_3R 12815241..12815608 14..383 99 -> Minus

BS15719.5prime Sequence

714 bp (714 high quality bases) assembled on 2006-12-21

> BS15719.5prime
GAAGTTATCAGTCGACATGATTACGCCGAATCCGTATTCCTTTAGTGGCA
ACATTTCCATCAGCAGTTGTCCAAGTGAAGATGTATCATTTTCGGAAAGC
ATCCTAGAGGACAACGGACGCATTTCGCTGGCCTATGAGAACCTGAAGAC
AATTCCGCGGCGACTGGCCGACAAATTCGCAGCGCAGACCAAGTTTCTCG
ATTTGAGTCACAATGATTTCCGAAACTTGAGATTTCTCTCCTTTTTCGAG
GATCTGGACACTTTAATCCTGGACCGCAACGTAAACCTGGACATAAACAC
TTTTCCTTATTTGCCGAGCTTAAGGATCTTGTGGATCAACAATTGCGATA
TAGCAAATATAACCGATTGGATACACCGCATCGAACGGCACTGTCCTGCG
CTGGATCAGCTCTCTTGCATGGGGAATCCTGGCATCCGCACAGTTTTCGG
GGGCCAAGGACCCCGCGAGTATATACTACAGGTGCTTCCCCAGCTAAAAT
ATCTCGATGGACTTCCAACCAGCAGGAATGCAGCTTATGCGACGCTGTCT
TCCTCACAAGGACAGGGTCCGGACTCCACGAGCAATTCGGAAAAGCCTCC
ACTCGCATCCGCATTCACTTTCAAGGACATCATCCGTCCAAAGTATTCCA
GAAAATCGCACAGCGGACGGATGTTTGGCAACGGCTCCTCCACAAACTGA
AAGCTTTCTAGACC

BS15719.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG31274-PA 684 CG31274-RA 1..684 17..700 3420 100 Plus
CG31274-PB 843 CG31274-RB 160..843 17..700 3420 100 Plus
CG31447-PA 843 MESK4-RA 160..843 17..700 3420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 04:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG31274-RB 1399 CG31274-RB 281..965 17..701 3425 100 Plus
MESK4-RB 1488 CG31447-RB 271..955 17..701 3425 100 Plus
MESK4-RA 1390 CG31447-RA 271..955 17..701 3425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 04:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16989518..16989886 333..701 1845 100 Plus
3R 32079331 3R 16993730..16994098 333..701 1845 100 Plus
3R 32079331 3R 16989138..16989455 17..334 1590 100 Plus
3R 32079331 3R 16993350..16993667 17..334 1590 100 Plus
Blast to na_te.dros performed on 2015-01-31 04:16:53 has no hits.

BS15719.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:35:18 Download gff for BS15719.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31274-PA 1..684 17..700 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:14:34 Download gff for BS15719.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31447-PA 160..843 17..700 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 20:55:42 Download gff for BS15719.5prime
Subject Subject Range Query Range Percent Splice Strand
MESK4-RB 271..955 17..701 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 05:27:37 Download gff for BS15719.5prime
Subject Subject Range Query Range Percent Splice Strand
MESK4-RA 271..955 17..701 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 05:27:37 Download gff for BS15719.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16989138..16989454 17..333 100 -> Plus
3R 16989519..16989886 334..701 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 20:55:42 Download gff for BS15719.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12814860..12815176 17..333 100 -> Plus
arm_3R 12815241..12815608 334..701 100   Plus

BS15719.complete Sequence

716 bp assembled on 2006-11-29

GenBank Submission: FJ637952

> BS15719.complete
GAAGTTATCAGTCGACATGATTACGCCGAATCCGTATTCCTTTAGTGGCA
ACATTTCCATCAGCAGTTGTCCAAGTGAAGATGTATCATTTTCGGAAAGC
ATCCTAGAGGACAACGGACGCATTTCGCTGGCCTATGAGAACCTGAAGAC
AATTCCGCGGCGACTGGCCGACAAATTCGCAGCGCAGACCAAGTTTCTCG
ATTTGAGTCACAATGATTTCCGAAACTTGAGATTTCTCTCCTTTTTCGAG
GATCTGGACACTTTAATCCTGGACCGCAACGTAAACCTGGACATAAACAC
TTTTCCTTATTTGCCGAGCTTAAGGATCTTGTGGATCAACAATTGCGATA
TAGCAAATATAACCGATTGGATACACCGCATCGAACGGCACTGTCCTGCG
CTGGATCAGCTCTCTTGCATGGGGAATCCTGGCATCCGCACAGTTTTCGG
GGGCCAAGGACCCCGCGAGTATATACTACAGGTGCTTCCCCAGCTAAAAT
ATCTCGATGGACTTCCAACCAGCAGGAATGCAGCTTATGCGACGCTGTCT
TCCTCACAAGGACAGGGTCCGGACTCCACGAGCAATTCGGAAAAGCCTCC
ACTCGCATCCGCATTCACTTTCAAGGACATCATCCGTCCAAAGTATTCCA
GAAAATCGCACAGCGGACGGATGTTTGGCAACGGCTCCTCCACAAACTGA
AAGCTTTCTAGACCAT

BS15719.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31274-RB 843 CG31274-PB 160..843 17..700 3420 100 Plus
MESK4-RB 843 CG31447-PB 160..843 17..700 3420 100 Plus
MESK4-RA 843 CG31447-PA 160..843 17..700 3420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG31274-RB 1399 CG31274-RB 281..965 17..701 3425 100 Plus
MESK4-RB 1488 CG31447-RB 271..955 17..701 3425 100 Plus
MESK4-RA 1390 CG31447-RA 271..955 17..701 3425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16989518..16989886 333..701 1845 100 Plus
3R 32079331 3R 16993730..16994098 333..701 1845 100 Plus
3R 32079331 3R 16989138..16989455 17..334 1590 100 Plus
3R 32079331 3R 16993350..16993667 17..334 1590 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:02:05 has no hits.

BS15719.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:18 Download gff for BS15719.complete
Subject Subject Range Query Range Percent Splice Strand
CG31274-RB 160..843 17..700 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:44 Download gff for BS15719.complete
Subject Subject Range Query Range Percent Splice Strand
CG31274-RB 160..844 17..701 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:50 Download gff for BS15719.complete
Subject Subject Range Query Range Percent Splice Strand
MESK4-RB 271..953 17..699 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:18 Download gff for BS15719.complete
Subject Subject Range Query Range Percent Splice Strand
CG31274-RB 160..844 17..701 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:48 Download gff for BS15719.complete
Subject Subject Range Query Range Percent Splice Strand
MESK4-RA 271..953 17..699 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:48 Download gff for BS15719.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16989138..16989454 17..333 100 -> Plus
3R 16989519..16989884 334..699 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:50 Download gff for BS15719.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12814860..12815176 17..333 100 -> Plus
arm_3R 12815241..12815606 334..699 100   Plus

BS15719.pep Sequence

Translation from 16 to 699

> BS15719.pep
MITPNPYSFSGNISISSCPSEDVSFSESILEDNGRISLAYENLKTIPRRL
ADKFAAQTKFLDLSHNDFRNLRFLSFFEDLDTLILDRNVNLDINTFPYLP
SLRILWINNCDIANITDWIHRIERHCPALDQLSCMGNPGIRTVFGGQGPR
EYILQVLPQLKYLDGLPTSRNAAYATLSSSQGQGPDSTSNSEKPPLASAF
TFKDIIRPKYSRKSHSGRMFGNGSSTN*

BS15719.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG31274-PB 280 CG31274-PB 54..280 1..227 1193 100 Plus
MESK4-PB 280 CG31447-PB 54..280 1..227 1193 100 Plus
MESK4-PA 280 CG31447-PA 54..280 1..227 1193 100 Plus
CG31076-PB 182 CG31076-PB 7..153 32..164 162 32.4 Plus