Clone Sequence Records
BS15721.complete Sequence
1007 bp assembled on 2010-02-09
GenBank Submission: KX803402
> BS15721.complete
GAAGTTATCAGTCGACATGTTCACCAAGTCAATGCTGAGCTTCTCCCTGG
TCGTGGCCCTCTTCGTTGTCTGCCACGCCAGTCCCGTTCCGGATAATAAT
GGCAAGTATACGGTTCCACAGCAATCCTCTAACGATGGCAAGTATCGCCC
CAGCGACGATGGGAAGTACCATGGGAATTCGCAGAACGAAGGCCGGAGTG
GTTCGCAAGAAAGTATAGGTCGCTATCATCACATGCCGATTCCCTACAGA
CATGTGAGCGATCAGCGTGAGCTTGGAAAATACCATCACATTCCCTATCC
CTATGACGGAGGCTATGGACCCTACGCTGGTTCGAATATTCCCTATGTCC
ATGACGACAGGCCTTACAACCACGACCTGTACACAAGCACGACCACCAAG
AAACCAACCACGACCACCAAAAGGACGACAACCTCGACCACCACCACCAC
CACCACGCCCCGCAATATTCTGTTCAACTACGATGATGAGGGTCGCCACA
AGATCCTGCACAAGGAAGAGGTCCGCAAACAGGACAAATACGATCACTCT
TACCTGACTGAGAATGGAATCTATGGCGAGGAGCAGGCCAAGCTTCACCA
CACCGGAGGCACACATGCCAAGGGATTCTATGAGTACACCGGTGACGATG
GCAAGCTTTATCGCGTAAACTACGCCTCCAACGATGGCGGCTTCATGCCC
CAGGGAGACCACATTCACCCGATCCCCGATGCCATTGTCCGTGCCCTCAA
GTACGTGGAGGAGCAGCACAAGATCAACGGTGGGGCTCAGTTCGACCATC
GCGGCTTCCGCATCAATCACATGACCAAGGACCTTAAGGCGCAGATCAAG
GCGATCCATCTGGAGGAGATGCCCAAGGAGCTGACCGAGCAGATCCATAT
GCTGGAGCACGAGGTGGAGCTCGCCGAGGAGGAGGAGCGCGAGGAGCAGG
CCGCATTGGAGCGACTCCGCCAGGCAGCAAAGTCCCACTAAAAGCTTTCT
AGACCAT
BS15721.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:25:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr49Ac-RC | 975 | CG8502-PC | 1..975 | 17..991 | 4875 | 100 | Plus |
Cpr49Ac-RA | 885 | CG8502-PA | 85..885 | 191..991 | 4005 | 100 | Plus |
Cpr49Ac-RG | 948 | CG8502-PG | 174..948 | 217..991 | 3875 | 100 | Plus |
Cpr49Ac-RA | 885 | CG8502-PA | 1..87 | 17..103 | 435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:25:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr49Ac-RC | 1434 | CG8502-RC | 96..1072 | 15..991 | 4885 | 100 | Plus |
Cpr49Ac-RA | 1344 | CG8502-RA | 182..982 | 191..991 | 4005 | 100 | Plus |
Cpr49Ac-RG | 1701 | CG8502-RG | 565..1339 | 217..991 | 3875 | 100 | Plus |
Cpr49Ac-RA | 1344 | CG8502-RA | 96..184 | 15..103 | 445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:25:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12389254..12389695 | 550..991 | 2210 | 100 | Plus |
2R | 25286936 | 2R | 12388923..12389086 | 386..549 | 820 | 100 | Plus |
2R | 25286936 | 2R | 12388298..12388450 | 217..369 | 765 | 100 | Plus |
2R | 25286936 | 2R | 12387381..12387518 | 55..192 | 690 | 100 | Plus |
2R | 25286936 | 2R | 12387055..12387096 | 15..56 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:25:36 has no hits.
BS15721.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:08 Download gff for
BS15721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ac-RC | 84..1051 | 22..989 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:04 Download gff for
BS15721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ac-RC | 103..1070 | 22..989 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:23 Download gff for
BS15721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ac-RC | 84..1051 | 22..989 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:28:29 Download gff for
BS15721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ac-RC | 103..1070 | 22..989 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:29 Download gff for
BS15721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12387062..12387095 | 22..55 | 100 | -> | Plus |
2R | 12387382..12387517 | 56..191 | 100 | -> | Plus |
2R | 12387913..12387939 | 192..218 | 100 | -> | Plus |
2R | 12388300..12388450 | 219..369 | 100 | -> | Plus |
2R | 12388518..12388533 | 370..385 | 100 | -> | Plus |
2R | 12388923..12389086 | 386..549 | 100 | -> | Plus |
2R | 12389254..12389693 | 550..989 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:04 Download gff for
BS15721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8274567..8274600 | 22..55 | 100 | -> | Plus |
arm_2R | 8274887..8275022 | 56..191 | 100 | -> | Plus |
arm_2R | 8275418..8275444 | 192..218 | 100 | -> | Plus |
arm_2R | 8275805..8275955 | 219..369 | 100 | -> | Plus |
arm_2R | 8276023..8276038 | 370..385 | 100 | -> | Plus |
arm_2R | 8276428..8276591 | 386..549 | 100 | -> | Plus |
arm_2R | 8276759..8277198 | 550..989 | 100 | | Plus |
BS15721.3prime Sequence
834 bp (772 high quality bases) assembled on 2006-12-21
> BS15721.3prime
ATGGTCTAGAAAGCTTTTACTGTGACTTTGCTGCCTGGCGGAGTCGCTCC
AATGCGGCCTGCTCCTCGCGCTCCTCCTCCTCGGCGAGCTCCACCTCGTG
CTCCAGCATATGGATCTGCTCGGTCAGCTCCTTGGGCATCTCCTCCAGAT
GGATCGCCTTGATCTGCGCCTTAAGGTCCTTGGTCATGTGATTGATGCGG
AAGCCGCGATGGTCGAACTGAGCCCCACCGTTGATCTTGTGCTGCTCCTC
CACGTACTTGAGGGCACGGACAATGGCATCGGGGATCGGGTGAATGTGGT
CTCCCTGGGGCATGAAGCCGCCATCGTTGGAGGCGTAGTTTACGCGATAA
AGCTTGCCATCGTCACCGGTGTACTCATAGAATCCCTTGGCATGTGTGCC
TCCGGTGTGGTGAAGCTTGGCCTGCTCCTCGCCATAGATTCCATTCTCAG
TCAGGTAAGAGTGATCGTATTTGTCCTGTTTGCGGACCTCTTCCTTGTGC
AGGATCTTGTGGCGACCCTCATCATCGTAGTTGAACAGAATATTGCGGGG
CGTGGTGGTGGTGGTGGTGGTCGAGGTTGTCGTCCTTTTGGTGGTCGTGG
TTGGTTTCTTGGTGGTCGTGCTTGTGTACAGGTCGTGGTTGTAAGGCCTG
TCGTCATGGACATAGGGAATATTCGAACCAGCGTAGGGTCCATAGCCTCC
GTCATAGGGATAGGGAATGTGATGGTATTTTCCAAGCTCACGCTGATCGC
TCACATGTCTGTAGGGAATCGGCATGTGATGATAGCGACCTATACTTTCT
TGCGAACCACTCCGGCCTTCGTTCTGCGAATTCC
BS15721.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8502-PC | 975 | CG8502-RC | 158..968 | 834..24 | 4055 | 100 | Minus |
CG8502-PA | 885 | CG8502-RA | 85..878 | 817..24 | 3970 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:13:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr49Ac-RC | 1434 | CG8502-RC | 255..1072 | 834..17 | 4060 | 99.8 | Minus |
Cpr49Ac-RA | 1344 | CG8502-RA | 182..982 | 817..17 | 3975 | 99.8 | Minus |
Cpr49Ac-RG | 1701 | CG8502-RG | 565..1339 | 791..17 | 3845 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 14:13:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12389254..12389695 | 458..17 | 2180 | 99.5 | Minus |
2R | 25286936 | 2R | 12388923..12389086 | 622..459 | 820 | 100 | Minus |
2R | 25286936 | 2R | 12388298..12388450 | 791..639 | 765 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 14:13:45 has no hits.
BS15721.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:35:21 Download gff for
BS15721.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8502-PC | 158..975 | 17..834 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:14:39 Download gff for
BS15721.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8502-PC | 158..975 | 17..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:15:35 Download gff for
BS15721.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ac-RC | 255..1072 | 17..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:52:20 Download gff for
BS15721.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ac-RC | 255..1072 | 17..834 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:52:20 Download gff for
BS15721.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12388923..12389086 | 459..622 | 100 | -> | Minus |
2R | 12387500..12387517 | 817..834 | 100 | -> | Minus |
2R | 12387913..12387939 | 790..816 | 100 | -> | Minus |
2R | 12388300..12388450 | 639..789 | 100 | -> | Minus |
2R | 12388518..12388533 | 623..638 | 100 | -> | Minus |
2R | 12389254..12389695 | 17..458 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:15:35 Download gff for
BS15721.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8276759..8277200 | 17..458 | 99 | | Minus |
arm_2R | 8275005..8275022 | 817..834 | 100 | -> | Minus |
arm_2R | 8275418..8275444 | 790..816 | 100 | -> | Minus |
arm_2R | 8275805..8275955 | 639..789 | 100 | -> | Minus |
arm_2R | 8276023..8276038 | 623..638 | 100 | -> | Minus |
arm_2R | 8276428..8276591 | 459..622 | 100 | -> | Minus |
BS15721.5prime Sequence
834 bp (758 high quality bases) assembled on 2006-12-21
> BS15721.5prime
GAAGTTATCAGTCGACATGTTCACCAAGTCAATGCTGAGCTTCTCCCTGG
TCGTGGCCCTCTTCGTTGTCTGCCACGCCAGTCCCGTTCCGGATAATAAT
GGCAAGTATACGGTTCCACAGCAATCCTCTAACGATGGCAAGTATCGCCC
CAGCGACGATGGGAAGTACCATGGGAATTCGCAGAACGAAGGCCGGAGTG
GTTCGCAAGAAAGTATAGGTCGCTATCATCACATGCCGATTCCCTACAGA
CATGTGAGCGATCAGCGTGAGCTTGGAAAATACCATCACATTCCCTATCC
CTATGACGGAGGCTATGGACCCTACGCTGGTTCGAATATTCCCTATGTCC
ATGACGACAGGCCTTACAACCACGACCTGTACACAAGCACGACCACCAAG
AAACCAACCACGACCACCAAAAGGACGACAACCTCGACCACCACCACCAC
CACCACGCCCCGCAATATTCTGTTCAACTACGATGATGAGGGTCGCCACA
AGATCCTGCACAAGGAAGAGGTCCGCAAACAGGACAAATACGATCACTCT
TACCTGACTGAGAATGGAATCTATGGCGAGGAGCAGGCCAAGCTTCACCA
CACCGGAGGCACACATGCCAAGGGATTCTATGAGTACACCGGTGACGATG
GCAAGCTTTATCGCGTAAACTACGCCTCCAACGATGGCGGCTTCATGCCC
CAGGGAGACCACATTCACCCGATCCCCGATGCCATTGTCCGTGCCCTCAA
GTACGTGGAGGAGCAGCACAAGATCAACGGTGGGGCTCAGTTCGACCATC
GCGGCTTCCGCATCAATCACATGACCAAGGACCT
BS15721.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8502-PC | 975 | CG8502-RC | 1..818 | 17..834 | 4090 | 100 | Plus |
CG8502-PA | 885 | CG8502-RA | 85..728 | 191..834 | 3220 | 100 | Plus |
CG8502-PA | 885 | CG8502-RA | 1..87 | 17..103 | 435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 07:30:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr49Ac-RC | 1434 | CG8502-RC | 96..915 | 15..834 | 4100 | 100 | Plus |
Cpr49Ac-RG | 1701 | CG8502-RG | 390..1182 | 15..834 | 3630 | 96.6 | Plus |
Cpr49Ac-RF | 1407 | CG8502-RF | 96..888 | 15..834 | 3630 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 07:30:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12389254..12389538 | 550..834 | 1425 | 100 | Plus |
2R | 25286936 | 2R | 12388923..12389086 | 386..549 | 820 | 100 | Plus |
2R | 25286936 | 2R | 12388298..12388450 | 217..369 | 765 | 100 | Plus |
2R | 25286936 | 2R | 12387381..12387518 | 55..192 | 690 | 100 | Plus |
2R | 25286936 | 2R | 12387055..12387096 | 15..56 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 07:30:29 has no hits.
BS15721.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:35:23 Download gff for
BS15721.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8502-PC | 1..818 | 17..834 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:14:40 Download gff for
BS15721.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8502-PC | 1..818 | 17..834 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 22:24:58 Download gff for
BS15721.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ac-RC | 91..915 | 10..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 08:22:54 Download gff for
BS15721.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ac-RC | 91..915 | 10..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 08:22:54 Download gff for
BS15721.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12387050..12387095 | 10..55 | 95 | -> | Plus |
2R | 12387382..12387517 | 56..191 | 100 | -> | Plus |
2R | 12387913..12387939 | 192..218 | 100 | -> | Plus |
2R | 12388300..12388450 | 219..369 | 100 | -> | Plus |
2R | 12388518..12388533 | 370..385 | 100 | -> | Plus |
2R | 12388923..12389086 | 386..549 | 100 | -> | Plus |
2R | 12389254..12389538 | 550..834 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 22:24:58 Download gff for
BS15721.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8274555..8274600 | 10..55 | 95 | -> | Plus |
arm_2R | 8274887..8275022 | 56..191 | 100 | -> | Plus |
arm_2R | 8275418..8275444 | 192..218 | 100 | -> | Plus |
arm_2R | 8275805..8275955 | 219..369 | 100 | -> | Plus |
arm_2R | 8276023..8276038 | 370..385 | 100 | -> | Plus |
arm_2R | 8276428..8276591 | 386..549 | 100 | -> | Plus |
arm_2R | 8276759..8277043 | 550..834 | 100 | | Plus |
BS15721.pep Sequence
Translation from 16 to 990
> BS15721.pep
MFTKSMLSFSLVVALFVVCHASPVPDNNGKYTVPQQSSNDGKYRPSDDGK
YHGNSQNEGRSGSQESIGRYHHMPIPYRHVSDQRELGKYHHIPYPYDGGY
GPYAGSNIPYVHDDRPYNHDLYTSTTTKKPTTTTKRTTTSTTTTTTTPRN
ILFNYDDEGRHKILHKEEVRKQDKYDHSYLTENGIYGEEQAKLHHTGGTH
AKGFYEYTGDDGKLYRVNYASNDGGFMPQGDHIHPIPDAIVRALKYVEEQ
HKINGGAQFDHRGFRINHMTKDLKAQIKAIHLEEMPKELTEQIHMLEHEV
ELAEEEEREEQAALERLRQAAKSH*
BS15721.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:10:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr49Ac-PC | 324 | CG8502-PC | 1..324 | 1..324 | 1762 | 100 | Plus |
Cpr49Ac-PG | 315 | CG8502-PG | 1..315 | 1..324 | 1699 | 97.2 | Plus |
Cpr49Ac-PF | 315 | CG8502-PF | 1..315 | 1..324 | 1699 | 97.2 | Plus |
Cpr49Ac-PA | 294 | CG8502-PA | 1..294 | 1..324 | 1553 | 90.7 | Plus |
Cpr49Ac-PE | 285 | CG8502-PE | 1..285 | 1..324 | 1501 | 88 | Plus |