Clone BS15723 Report

Search the DGRC for BS15723

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:157
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCG7694-RA
Protein status:BS15723.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15723.5prime Sequence

474 bp (474 high quality bases) assembled on 2006-12-21

> BS15723.5prime
GAAGTTATCAGTCGACATGTCCGACTACTTCGAGGAACTGGGTCATGAAC
CCACTGGACCACTGGGCGCAAACGATTTGGCCAGAAATCTAAAGCGCCTT
CAGGTTTTGGCCATCATGAATGGCATCGATATGGAGATCGAGGTGCCAGA
GGCCTCCAAGCGAGCCATTCTGGAGCTACCAGTTCATGAAATCGTCAAAT
CGGACGAGGGCGGCGATTTGGAGTGCTCTGTGTGCAAGGAGCCAGCTGAA
GAGGGCCAGAAGTACAGGATCCTTCCATGCAAGCACGAGTTCCACGAGGA
GTGCATCCTGCTCTGGCTGAAGAAGACGAATTCCTGTCCTCTGTGTCGCT
ATGAACTGGAAACTGATGATCCTGTTTACGAGGAGTTGCGCAGGTTTAGG
CAGGATGAAGCTAACCGACGGGAGCGGGAGAACACTCTTTTGGATTCCAT
GTTCGGCTAAAAGCTTTCTAGACC

BS15723.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7694-PA 444 CG7694-RA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 12:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7694-RC 631 CG7694-RC 116..560 16..460 2225 100 Plus
CG7694-RB 640 CG7694-RB 125..569 16..460 2225 100 Plus
CG7694-RA 970 CG7694-RA 455..899 16..460 2225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 12:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18590118..18590427 16..325 1550 100 Plus
3R 32079331 3R 18590519..18590655 324..460 685 100 Plus
Blast to na_te.dros performed on 2015-01-30 12:31:55 has no hits.

BS15723.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:35:27 Download gff for BS15723.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7694-PA 1..444 17..460 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:14:46 Download gff for BS15723.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7694-PA 1..444 17..460 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:38:09 Download gff for BS15723.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7694-RA 451..898 16..466 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:02:33 Download gff for BS15723.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7694-RA 455..902 16..466 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 14:02:33 Download gff for BS15723.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18590521..18590658 326..466 97   Plus
3R 18590109..18590427 2..325 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:38:09 Download gff for BS15723.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14415831..14416149 2..325 98 -> Plus
arm_3R 14416243..14416380 326..466 97   Plus

BS15723.3prime Sequence

474 bp (474 high quality bases) assembled on 2006-12-21

> BS15723.3prime
ATGGTCTAGAAAGCTTTTACCCGAACATGGAATCCAAAAGAGTGTTCTCC
CGCTCCCGTCGGTTAGCTTCATCCTGCCTAAACCTGCGCAACTCCTCGTA
AACAGGATCATCAGTTTCCAGTTCATAGCGACACAGAGGACAGGAATTCG
TCTTCTTCAGCCAGAGCAGGATGCACTCCTCGTGGAACTCGTGCTTGCAT
GGAAGGATCCTGTACTTCTGGCCCTCTTCAGCTGGCTCCTTGCACACAGA
GCACTCCAAATCGCCGCCCTCGTCCGATTTGACGATTTCATGAACTGGTA
GCTCCAGAATGGCTCGCTTGGAGGCCTCTGGCACCTCGATCTCCATATCG
ATGCCATTCATGATGGCCAAAACCTGAAGGCGCTTTAGATTTCTGGCCAA
ATCGTTTGCGCCCAGTGGTCCAGTGGGTTCATGACCCAGTTCCTCGAAGT
AGTCGGACATGTCGACTGATAACT

BS15723.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7694-PA 444 CG7694-RA 1..440 460..21 2200 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:39:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG7694-RC 631 CG7694-RC 116..560 461..17 2210 99.8 Minus
CG7694-RB 640 CG7694-RB 125..569 461..17 2210 99.8 Minus
CG7694-RA 970 CG7694-RA 455..899 461..17 2210 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 04:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18590118..18590427 461..152 1550 100 Minus
3R 32079331 3R 18590519..18590655 153..17 670 99.3 Minus
Blast to na_te.dros performed on 2015-01-30 04:39:42 has no hits.

BS15723.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:35:26 Download gff for BS15723.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7694-PA 1..444 17..460 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:14:44 Download gff for BS15723.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7694-PA 1..444 17..460 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:32:45 Download gff for BS15723.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7694-RA 451..898 11..461 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 06:47:49 Download gff for BS15723.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7694-RA 455..902 11..461 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 06:47:49 Download gff for BS15723.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18590109..18590427 152..474 98 -> Minus
3R 18590521..18590658 11..151 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:32:45 Download gff for BS15723.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14415831..14416149 152..474 98 -> Minus
arm_3R 14416243..14416380 11..151 97   Minus

BS15723.complete Sequence

476 bp assembled on 2006-11-29

GenBank Submission: FJ637953

> BS15723.complete
GAAGTTATCAGTCGACATGTCCGACTACTTCGAGGAACTGGGTCATGAAC
CCACTGGACCACTGGGCGCAAACGATTTGGCCAGAAATCTAAAGCGCCTT
CAGGTTTTGGCCATCATGAATGGCATCGATATGGAGATCGAGGTGCCAGA
GGCCTCCAAGCGAGCCATTCTGGAGCTACCAGTTCATGAAATCGTCAAAT
CGGACGAGGGCGGCGATTTGGAGTGCTCTGTGTGCAAGGAGCCAGCTGAA
GAGGGCCAGAAGTACAGGATCCTTCCATGCAAGCACGAGTTCCACGAGGA
GTGCATCCTGCTCTGGCTGAAGAAGACGAATTCCTGTCCTCTGTGTCGCT
ATGAACTGGAAACTGATGATCCTGTTTACGAGGAGTTGCGCAGGTTTAGG
CAGGATGAAGCTAACCGACGGGAGCGGGAGAACACTCTTTTGGATTCCAT
GTTCGGCTAAAAGCTTTCTAGACCAT

BS15723.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7694-RC 444 CG7694-PC 1..444 17..460 2220 100 Plus
CG7694-RB 444 CG7694-PB 1..444 17..460 2220 100 Plus
CG7694-RA 444 CG7694-PA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7694-RC 631 CG7694-RC 116..560 16..460 2225 100 Plus
CG7694-RB 640 CG7694-RB 125..569 16..460 2225 100 Plus
CG7694-RA 970 CG7694-RA 455..899 16..460 2225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18590118..18590427 16..325 1550 100 Plus
3R 32079331 3R 18590519..18590655 324..460 685 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:23:27 has no hits.

BS15723.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:19 Download gff for BS15723.complete
Subject Subject Range Query Range Percent Splice Strand
CG7694-RB 1..444 17..460 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:46 Download gff for BS15723.complete
Subject Subject Range Query Range Percent Splice Strand
CG7694-RA 451..898 16..466 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:19 Download gff for BS15723.complete
Subject Subject Range Query Range Percent Splice Strand
CG7694-RA 452..893 17..458 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:20 Download gff for BS15723.complete
Subject Subject Range Query Range Percent Splice Strand
CG7694-RA 451..898 16..466 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:36 Download gff for BS15723.complete
Subject Subject Range Query Range Percent Splice Strand
CG7694-RA 456..897 17..458 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:36 Download gff for BS15723.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18590119..18590427 17..325 100 -> Plus
3R 18590521..18590653 326..458 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:19 Download gff for BS15723.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14415841..14416149 17..325 100 -> Plus
arm_3R 14416243..14416375 326..458 100   Plus

BS15723.pep Sequence

Translation from 16 to 459

> BS15723.pep
MSDYFEELGHEPTGPLGANDLARNLKRLQVLAIMNGIDMEIEVPEASKRA
ILELPVHEIVKSDEGGDLECSVCKEPAEEGQKYRILPCKHEFHEECILLW
LKKTNSCPLCRYELETDDPVYEELRRFRQDEANRRERENTLLDSMFG*

BS15723.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7694-PC 147 CG7694-PC 1..147 1..147 784 100 Plus
CG7694-PB 147 CG7694-PB 1..147 1..147 784 100 Plus
CG7694-PA 147 CG7694-PA 1..147 1..147 784 100 Plus
gol-PE 461 CG2679-PE 278..347 47..114 144 40.8 Plus
gol-PC 461 CG2679-PC 278..347 47..114 144 40.8 Plus