Clone BS15724 Report

Search the DGRC for BS15724

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:157
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCREG-RC
Protein status:BS15724.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15724.3prime Sequence

552 bp (552 high quality bases) assembled on 2006-12-21

> BS15724.3prime
ATGGTCTAGAAAGCTTTCACTTTATGAGGACCTCCATAGAAGTCCAGAAC
AAAGATATTGCTAATTTCCAGTTCGCAAAGGTAGAAATTGTGAGCTTCTT
CACCTGTCCACTGATCATGGAACGGGCACATGTAGGCTCCATGGGATCCT
TTCCGCCCTCCTTGCATCTTAGGGTCTGCTCGTCACTGAACAGGAGTGTG
ACCTTGTTGTCCTTCTGCCAGTCGGGACCAGTGAAGTCCAAATCGGTTAG
CAGGAATCGAATACGTCCAGTGGACCTGTTATTAGCATCGCTGTCGTCGA
TGGAGATAATGTTGACCATGGGATACCCCTTCACCCGTTCGTTGGTGGAG
AGACTTCCCACAGCCGCCCAATTGGCGCGATGGACCAAATCTCTGGCGAT
CTTGGCGTGATTTAACTCTTGCTCTCGCTTATATTCTCTAATTATACGCT
CATCTTTCCGGCGGGAGTAACCGGAAGAGGGGTCCAGGCTCACGAGGGCC
AAAATCAGGGCGAATAGTAGGGAGTGAAAGGTTTTCATGTCGACTGATAA
CT

BS15724.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5413-PC 522 CREG-RC 1..522 538..17 2610 100 Minus
CG5413-PA 636 CREG-RA 1..444 538..95 2220 100 Minus
CG5413-PB 636 CREG-RB 1..444 538..95 2220 100 Minus
CG5413-PA 636 CREG-RA 524..604 97..17 405 100 Minus
CG5413-PB 636 CREG-RB 524..604 97..17 405 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
CREG-RC 823 CG5413-RC 50..572 539..17 2615 100 Minus
CREG-RD 962 CG5413-RD 107..551 539..95 2225 100 Minus
CREG-RB 967 CG5413-RB 112..556 539..95 2225 100 Minus
CREG-RD 962 CG5413-RD 631..711 97..17 405 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17393816..17394260 95..539 2225 100 Plus
3R 32079331 3R 17393523..17393602 17..96 400 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:17:14 has no hits.

BS15724.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:35:28 Download gff for BS15724.3prime
Subject Subject Range Query Range Percent Splice Strand
CREG-PC 1..522 17..538 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:14:47 Download gff for BS15724.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5413-PC 1..522 17..538 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 13:14:01 Download gff for BS15724.3prime
Subject Subject Range Query Range Percent Splice Strand
CREG-RC 38..580 8..550 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:39:37 Download gff for BS15724.3prime
Subject Subject Range Query Range Percent Splice Strand
CREG-RC 38..580 8..550 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:39:37 Download gff for BS15724.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17393515..17393600 8..94 95 <- Plus
3R 17393816..17394272 95..550 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 13:14:01 Download gff for BS15724.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13219237..13219322 8..94 95 <- Plus
arm_3R 13219538..13219994 95..550 98   Plus

BS15724.5prime Sequence

552 bp (552 high quality bases) assembled on 2006-12-21

> BS15724.5prime
GAAGTTATCAGTCGACATGAAAACCTTTCACTCCCTACTATTCGCCCTGA
TTTTGGCCCTCGTGAGCCTGGACCCCTCTTCCGGTTACTCCCGCCGGAAA
GATGAGCGTATAATTAGAGAATATAAGCGAGAGCAAGAGTTAAATCACGC
CAAGATCGCCAGAGATTTGGTCCATCGCGCCAATTGGGCGGCTGTGGGAA
GTCTCTCCACCAACGAACGGGTGAAGGGGTATCCCATGGTCAACATTATC
TCCATCGACGACAGCGATGCTAATAACAGGTCCACTGGACGTATTCGATT
CCTGCTAACCGATTTGGACTTCACTGGTCCCGACTGGCAGAAGGACAACA
AGGTCACACTCCTGTTCAGTGACGAGCAGACCCTAAGATGCAAGGAGGGC
GGAAAGGATCCCATGGAGCCTACATGTGCCCGTTCCATGATCAGTGGACA
GGTGAAGAAGCTCACAATTTCTACCTTTGCGAACTGGAAATTAGCAATAT
CTTTGTTCTGGACTTCTATGGAGGTCCTCATAAAGTGAAAGCTTTCTAGA
CC

BS15724.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5413-PC 522 CREG-RC 1..522 17..538 2610 100 Plus
CG5413-PA 636 CREG-RA 1..444 17..460 2220 100 Plus
CG5413-PB 636 CREG-RB 1..444 17..460 2220 100 Plus
CG5413-PA 636 CREG-RA 524..604 458..538 405 100 Plus
CG5413-PB 636 CREG-RB 524..604 458..538 405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
CREG-RC 823 CG5413-RC 50..572 16..538 2615 100 Plus
CREG-RD 962 CG5413-RD 107..551 16..460 2225 100 Plus
CREG-RB 967 CG5413-RB 112..556 16..460 2225 100 Plus
CREG-RD 962 CG5413-RD 631..711 458..538 405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17393816..17394260 460..16 2225 100 Minus
3R 32079331 3R 17393523..17393602 538..459 400 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:51:53 has no hits.

BS15724.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:35:29 Download gff for BS15724.5prime
Subject Subject Range Query Range Percent Splice Strand
CREG-PC 1..522 17..538 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:14:49 Download gff for BS15724.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5413-PC 1..522 17..538 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 03:49:24 Download gff for BS15724.5prime
Subject Subject Range Query Range Percent Splice Strand
CREG-RC 38..580 5..547 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:41 Download gff for BS15724.5prime
Subject Subject Range Query Range Percent Splice Strand
CREG-RC 38..580 5..547 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:41 Download gff for BS15724.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17393515..17393600 461..547 95 <- Minus
3R 17393816..17394272 5..460 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 03:49:24 Download gff for BS15724.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13219237..13219322 461..547 95 <- Minus
arm_3R 13219538..13219994 5..460 98   Minus

BS15724.complete Sequence

554 bp assembled on 2006-11-29

GenBank Submission: FJ638869

> BS15724.complete
GAAGTTATCAGTCGACATGAAAACCTTTCACTCCCTACTATTCGCCCTGA
TTTTGGCCCTCGTGAGCCTGGACCCCTCTTCCGGTTACTCCCGCCGGAAA
GATGAGCGTATAATTAGAGAATATAAGCGAGAGCAAGAGTTAAATCACGC
CAAGATCGCCAGAGATTTGGTCCATCGCGCCAATTGGGCGGCTGTGGGAA
GTCTCTCCACCAACGAACGGGTGAAGGGGTATCCCATGGTCAACATTATC
TCCATCGACGACAGCGATGCTAATAACAGGTCCACTGGACGTATTCGATT
CCTGCTAACCGATTTGGACTTCACTGGTCCCGACTGGCAGAAGGACAACA
AGGTCACACTCCTGTTCAGTGACGAGCAGACCCTAAGATGCAAGGAGGGC
GGAAAGGATCCCATGGAGCCTACATGTGCCCGTTCCATGATCAGTGGACA
GGTGAAGAAGCTCACAATTTCTACCTTTGCGAACTGGAAATTAGCAATAT
CTTTGTTCTGGACTTCTATGGAGGTCCTCATAAAGTGAAAGCTTTCTAGA
CCAT

BS15724.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:52:43
Subject Length Description Subject Range Query Range Score Percent Strand
CREG-RC 522 CG5413-PC 1..522 17..538 2610 100 Plus
CREG-RD 636 CG5413-PD 1..444 17..460 2220 100 Plus
CREG-RB 636 CG5413-PB 1..444 17..460 2220 100 Plus
CREG-RD 636 CG5413-PD 524..604 458..538 405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:52:44
Subject Length Description Subject Range Query Range Score Percent Strand
CREG-RC 823 CG5413-RC 50..572 16..538 2615 100 Plus
CREG-RD 962 CG5413-RD 107..551 16..460 2225 100 Plus
CREG-RB 967 CG5413-RB 112..556 16..460 2225 100 Plus
CREG-RD 962 CG5413-RD 631..711 458..538 405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:52:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17393816..17394260 460..16 2225 100 Minus
3R 32079331 3R 17393523..17393602 538..459 400 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:52:41 has no hits.

BS15724.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:20 Download gff for BS15724.complete
Subject Subject Range Query Range Percent Splice Strand
CREG-RC 1..522 17..538 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:48 Download gff for BS15724.complete
Subject Subject Range Query Range Percent Splice Strand
CREG-RC 11..553 5..547 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:22 Download gff for BS15724.complete
Subject Subject Range Query Range Percent Splice Strand
CREG-RC 51..571 17..537 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:21 Download gff for BS15724.complete
Subject Subject Range Query Range Percent Splice Strand
CREG-RC 11..553 5..547 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:41 Download gff for BS15724.complete
Subject Subject Range Query Range Percent Splice Strand
CREG-RC 51..571 17..537 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:41 Download gff for BS15724.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17393524..17393600 461..537 100 <- Minus
3R 17393816..17394259 17..460 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:22 Download gff for BS15724.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13219246..13219322 461..537 100 <- Minus
arm_3R 13219538..13219981 17..460 100   Minus

BS15724.pep Sequence

Translation from 16 to 537

> BS15724.pep
MKTFHSLLFALILALVSLDPSSGYSRRKDERIIREYKREQELNHAKIARD
LVHRANWAAVGSLSTNERVKGYPMVNIISIDDSDANNRSTGRIRFLLTDL
DFTGPDWQKDNKVTLLFSDEQTLRCKEGGKDPMEPTCARSMISGQVKKLT
ISTFANWKLAISLFWTSMEVLIK*

BS15724.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
CREG-PC 173 CG5413-PC 1..173 1..173 891 100 Plus
CREG-PD 211 CG5413-PD 1..149 1..149 766 99.3 Plus
CREG-PB 211 CG5413-PB 1..149 1..149 766 99.3 Plus
CREG-PA 211 CG5413-PA 1..149 1..149 766 99.3 Plus