Clone Sequence Records
BS15724.3prime Sequence
552 bp (552 high quality bases) assembled on 2006-12-21
> BS15724.3prime
ATGGTCTAGAAAGCTTTCACTTTATGAGGACCTCCATAGAAGTCCAGAAC
AAAGATATTGCTAATTTCCAGTTCGCAAAGGTAGAAATTGTGAGCTTCTT
CACCTGTCCACTGATCATGGAACGGGCACATGTAGGCTCCATGGGATCCT
TTCCGCCCTCCTTGCATCTTAGGGTCTGCTCGTCACTGAACAGGAGTGTG
ACCTTGTTGTCCTTCTGCCAGTCGGGACCAGTGAAGTCCAAATCGGTTAG
CAGGAATCGAATACGTCCAGTGGACCTGTTATTAGCATCGCTGTCGTCGA
TGGAGATAATGTTGACCATGGGATACCCCTTCACCCGTTCGTTGGTGGAG
AGACTTCCCACAGCCGCCCAATTGGCGCGATGGACCAAATCTCTGGCGAT
CTTGGCGTGATTTAACTCTTGCTCTCGCTTATATTCTCTAATTATACGCT
CATCTTTCCGGCGGGAGTAACCGGAAGAGGGGTCCAGGCTCACGAGGGCC
AAAATCAGGGCGAATAGTAGGGAGTGAAAGGTTTTCATGTCGACTGATAA
CT
BS15724.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5413-PC | 522 | CREG-RC | 1..522 | 538..17 | 2610 | 100 | Minus |
CG5413-PA | 636 | CREG-RA | 1..444 | 538..95 | 2220 | 100 | Minus |
CG5413-PB | 636 | CREG-RB | 1..444 | 538..95 | 2220 | 100 | Minus |
CG5413-PA | 636 | CREG-RA | 524..604 | 97..17 | 405 | 100 | Minus |
CG5413-PB | 636 | CREG-RB | 524..604 | 97..17 | 405 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:17:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CREG-RC | 823 | CG5413-RC | 50..572 | 539..17 | 2615 | 100 | Minus |
CREG-RD | 962 | CG5413-RD | 107..551 | 539..95 | 2225 | 100 | Minus |
CREG-RB | 967 | CG5413-RB | 112..556 | 539..95 | 2225 | 100 | Minus |
CREG-RD | 962 | CG5413-RD | 631..711 | 97..17 | 405 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:17:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17393816..17394260 | 95..539 | 2225 | 100 | Plus |
3R | 32079331 | 3R | 17393523..17393602 | 17..96 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:17:14 has no hits.
BS15724.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:35:28 Download gff for
BS15724.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-PC | 1..522 | 17..538 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:14:47 Download gff for
BS15724.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5413-PC | 1..522 | 17..538 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 13:14:01 Download gff for
BS15724.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RC | 38..580 | 8..550 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:39:37 Download gff for
BS15724.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RC | 38..580 | 8..550 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:39:37 Download gff for
BS15724.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17393515..17393600 | 8..94 | 95 | <- | Plus |
3R | 17393816..17394272 | 95..550 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 13:14:01 Download gff for
BS15724.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13219237..13219322 | 8..94 | 95 | <- | Plus |
arm_3R | 13219538..13219994 | 95..550 | 98 | | Plus |
BS15724.5prime Sequence
552 bp (552 high quality bases) assembled on 2006-12-21
> BS15724.5prime
GAAGTTATCAGTCGACATGAAAACCTTTCACTCCCTACTATTCGCCCTGA
TTTTGGCCCTCGTGAGCCTGGACCCCTCTTCCGGTTACTCCCGCCGGAAA
GATGAGCGTATAATTAGAGAATATAAGCGAGAGCAAGAGTTAAATCACGC
CAAGATCGCCAGAGATTTGGTCCATCGCGCCAATTGGGCGGCTGTGGGAA
GTCTCTCCACCAACGAACGGGTGAAGGGGTATCCCATGGTCAACATTATC
TCCATCGACGACAGCGATGCTAATAACAGGTCCACTGGACGTATTCGATT
CCTGCTAACCGATTTGGACTTCACTGGTCCCGACTGGCAGAAGGACAACA
AGGTCACACTCCTGTTCAGTGACGAGCAGACCCTAAGATGCAAGGAGGGC
GGAAAGGATCCCATGGAGCCTACATGTGCCCGTTCCATGATCAGTGGACA
GGTGAAGAAGCTCACAATTTCTACCTTTGCGAACTGGAAATTAGCAATAT
CTTTGTTCTGGACTTCTATGGAGGTCCTCATAAAGTGAAAGCTTTCTAGA
CC
BS15724.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5413-PC | 522 | CREG-RC | 1..522 | 17..538 | 2610 | 100 | Plus |
CG5413-PA | 636 | CREG-RA | 1..444 | 17..460 | 2220 | 100 | Plus |
CG5413-PB | 636 | CREG-RB | 1..444 | 17..460 | 2220 | 100 | Plus |
CG5413-PA | 636 | CREG-RA | 524..604 | 458..538 | 405 | 100 | Plus |
CG5413-PB | 636 | CREG-RB | 524..604 | 458..538 | 405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:51:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CREG-RC | 823 | CG5413-RC | 50..572 | 16..538 | 2615 | 100 | Plus |
CREG-RD | 962 | CG5413-RD | 107..551 | 16..460 | 2225 | 100 | Plus |
CREG-RB | 967 | CG5413-RB | 112..556 | 16..460 | 2225 | 100 | Plus |
CREG-RD | 962 | CG5413-RD | 631..711 | 458..538 | 405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:51:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17393816..17394260 | 460..16 | 2225 | 100 | Minus |
3R | 32079331 | 3R | 17393523..17393602 | 538..459 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:51:53 has no hits.
BS15724.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:35:29 Download gff for
BS15724.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-PC | 1..522 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:14:49 Download gff for
BS15724.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5413-PC | 1..522 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 03:49:24 Download gff for
BS15724.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RC | 38..580 | 5..547 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:41 Download gff for
BS15724.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RC | 38..580 | 5..547 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:41 Download gff for
BS15724.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17393515..17393600 | 461..547 | 95 | <- | Minus |
3R | 17393816..17394272 | 5..460 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 03:49:24 Download gff for
BS15724.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13219237..13219322 | 461..547 | 95 | <- | Minus |
arm_3R | 13219538..13219994 | 5..460 | 98 | | Minus |
BS15724.complete Sequence
554 bp assembled on 2006-11-29
GenBank Submission: FJ638869
> BS15724.complete
GAAGTTATCAGTCGACATGAAAACCTTTCACTCCCTACTATTCGCCCTGA
TTTTGGCCCTCGTGAGCCTGGACCCCTCTTCCGGTTACTCCCGCCGGAAA
GATGAGCGTATAATTAGAGAATATAAGCGAGAGCAAGAGTTAAATCACGC
CAAGATCGCCAGAGATTTGGTCCATCGCGCCAATTGGGCGGCTGTGGGAA
GTCTCTCCACCAACGAACGGGTGAAGGGGTATCCCATGGTCAACATTATC
TCCATCGACGACAGCGATGCTAATAACAGGTCCACTGGACGTATTCGATT
CCTGCTAACCGATTTGGACTTCACTGGTCCCGACTGGCAGAAGGACAACA
AGGTCACACTCCTGTTCAGTGACGAGCAGACCCTAAGATGCAAGGAGGGC
GGAAAGGATCCCATGGAGCCTACATGTGCCCGTTCCATGATCAGTGGACA
GGTGAAGAAGCTCACAATTTCTACCTTTGCGAACTGGAAATTAGCAATAT
CTTTGTTCTGGACTTCTATGGAGGTCCTCATAAAGTGAAAGCTTTCTAGA
CCAT
BS15724.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:52:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CREG-RC | 522 | CG5413-PC | 1..522 | 17..538 | 2610 | 100 | Plus |
CREG-RD | 636 | CG5413-PD | 1..444 | 17..460 | 2220 | 100 | Plus |
CREG-RB | 636 | CG5413-PB | 1..444 | 17..460 | 2220 | 100 | Plus |
CREG-RD | 636 | CG5413-PD | 524..604 | 458..538 | 405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:52:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CREG-RC | 823 | CG5413-RC | 50..572 | 16..538 | 2615 | 100 | Plus |
CREG-RD | 962 | CG5413-RD | 107..551 | 16..460 | 2225 | 100 | Plus |
CREG-RB | 967 | CG5413-RB | 112..556 | 16..460 | 2225 | 100 | Plus |
CREG-RD | 962 | CG5413-RD | 631..711 | 458..538 | 405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:52:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17393816..17394260 | 460..16 | 2225 | 100 | Minus |
3R | 32079331 | 3R | 17393523..17393602 | 538..459 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:52:41 has no hits.
BS15724.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:20 Download gff for
BS15724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RC | 1..522 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:48 Download gff for
BS15724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RC | 11..553 | 5..547 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:22 Download gff for
BS15724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RC | 51..571 | 17..537 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:21 Download gff for
BS15724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RC | 11..553 | 5..547 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:41 Download gff for
BS15724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RC | 51..571 | 17..537 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:41 Download gff for
BS15724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17393524..17393600 | 461..537 | 100 | <- | Minus |
3R | 17393816..17394259 | 17..460 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:22 Download gff for
BS15724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13219246..13219322 | 461..537 | 100 | <- | Minus |
arm_3R | 13219538..13219981 | 17..460 | 100 | | Minus |
BS15724.pep Sequence
Translation from 16 to 537
> BS15724.pep
MKTFHSLLFALILALVSLDPSSGYSRRKDERIIREYKREQELNHAKIARD
LVHRANWAAVGSLSTNERVKGYPMVNIISIDDSDANNRSTGRIRFLLTDL
DFTGPDWQKDNKVTLLFSDEQTLRCKEGGKDPMEPTCARSMISGQVKKLT
ISTFANWKLAISLFWTSMEVLIK*
BS15724.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CREG-PC | 173 | CG5413-PC | 1..173 | 1..173 | 891 | 100 | Plus |
CREG-PD | 211 | CG5413-PD | 1..149 | 1..149 | 766 | 99.3 | Plus |
CREG-PB | 211 | CG5413-PB | 1..149 | 1..149 | 766 | 99.3 | Plus |
CREG-PA | 211 | CG5413-PA | 1..149 | 1..149 | 766 | 99.3 | Plus |