Clone Sequence Records
BS15729.complete Sequence
1514 bp assembled on 2009-12-07
GenBank Submission: KX802472
> BS15729.complete
GAAGTTATCAGTCGACATGTCCAACACGGAGAAAGGAGGTCTGCAAAGAG
TGCGAAACTTTCTGTCATGCCGCCAAGTTCTGAACCTGCTGACCATGCTC
GGCTTCATGCTGAACTACGCCCTGCGAGTGAACCTCACCATTGCCATCGT
GGACATGGTCCGACCCAATGTCACATCAGCGGTGAATGCCACTCTAGTGG
GGAATAGTACGGCGGCCAATAGCACCGCATCGCCTGATGGAGTGGATGTG
TACGAGGAGCGCTTTCCCTGGGACAGCTACCAGACCAACTTCGTGCTGGG
CTGCTTCTTCTGGGGCTACATCCTCACCGAACTGCCGGGCGGTCGTCTTG
CCGAGCTGATCGGTGGACGCCGCGTCTTTGGACATTCCATGCTGTGGGCC
AGTCTGCTCACCCTGATCACGCCGCTGGCGGCGCATATCAACTACGTGGT
GCTCATCGTGGTGCGAGTTGTTCTTGGCTTCATGCTGGGCGCATCCTGGC
CAGCCATTCACCCGGTGGCCGCTGTCTGGATTCCGCCCATGGAGCGCTCC
AAGTTTATGTCCAACATGATGGCTTCTTCGCTTGGTGCTGCAATCACCAT
GCCCATCTGCGGCTACCTGATCTCCGTCGCTGGCTGGGCCAGTGTTTTCT
ATTTGACGGGAGCCGTGGGTCTGCTGTGGTCCTTGGCCTGGTTCACTTTT
GTCTATGAGACACCCGCCACTCATCCCAGGATTTCAGCCGAGGAGCGGCG
GGAGATTGAGGAGGCCATTGGCACCACTACCTCTAAGAAGCGTCCGAGCC
ATGTGCCCTGGGGTCAGCTGCTCTGCTCTCCAGCTGTGTGGGCAATCATC
ATCTGTCACGGACTGGCCGTCTTTGGATTCTTCACTGTGGTCAATCAGTT
GCCCACTTTCATGTCCAAGATTCTGCACTTCGATATCAAACAGAATGGTT
TGTTCTCGTCGCTGCCTTATCTGGGTAAATACGTTATGGCTGTGGCTTCA
TCCTACCTGGCTGATTACCTGCGCAAGAAGGGTACTTTGAGCACGACGGC
CACCAGGAAACTATTCACTACTTTTGCTCTTGTGATTCCCGGTCTTTTGA
TGATAGTGCAAGTGTTTCTGGGCTACGATGCCACCTGGTCTGTCACGATC
TTCTCGCTGGCCCTGTTTGCCCATGGTGCAGTCACCGCTGGTTATCTCGG
CAATGGCTTGGATATTGCACCGAACTTTGGAGGAACCATTTTCGGATTGG
CCAACACGCTGTCTTCCTTTGGTGGCTTCCTTTCCACGTCGATGGTGGGA
GCCCTCACCTACAAGGATCAATCCTTCCATTCGTGGCAAATTGTGTTCTG
GATCCTGGCCGCCACCTATATCTCGGCAGCTGTGGTGTTCGCCATCCTTG
GCAGCGGTGAACTGCAGCCGTGGAACAATCCTCCAGAACGTGTCAGAATC
AGCGACGTCACCCAGGAGGAGGGTGTGCCCCTCAAGAACGAGAAGTGAAA
GCTTTCTAGACCAT
BS15729.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:40:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3036-RB | 1482 | CG3036-PB | 1..1482 | 17..1498 | 7410 | 100 | Plus |
CG3036-RA | 1482 | CG3036-PA | 1..1482 | 17..1498 | 7410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3036-RB | 2300 | CG3036-RB | 513..1995 | 16..1498 | 7415 | 100 | Plus |
CG3036-RA | 2731 | CG3036-RA | 513..1995 | 16..1498 | 7415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4901402..4901917 | 57..572 | 2580 | 100 | Plus |
2L | 23513712 | 2L | 4902024..4902406 | 572..954 | 1870 | 99.2 | Plus |
2L | 23513712 | 2L | 4902663..4902905 | 1076..1318 | 1215 | 100 | Plus |
2L | 23513712 | 2L | 4902974..4903153 | 1319..1498 | 900 | 100 | Plus |
2L | 23513712 | 2L | 4902457..4902593 | 940..1076 | 685 | 100 | Plus |
2L | 23513712 | 2L | 4893954..4893994 | 16..56 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:40:29 has no hits.
BS15729.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:34 Download gff for
BS15729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3036-RA | 1..1482 | 17..1498 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:25 Download gff for
BS15729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3036-RA | 511..1991 | 17..1497 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:54:27 Download gff for
BS15729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3036-RA | 514..1994 | 17..1497 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:03 Download gff for
BS15729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3036-RA | 511..1991 | 17..1497 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:17 Download gff for
BS15729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3036-RA | 514..1994 | 17..1497 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:17 Download gff for
BS15729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4902974..4903152 | 1319..1497 | 100 | | Plus |
2L | 4893955..4893994 | 17..56 | 100 | -> | Plus |
2L | 4901402..4901917 | 57..572 | 100 | -> | Plus |
2L | 4902025..4902395 | 573..943 | 100 | -> | Plus |
2L | 4902461..4902593 | 944..1076 | 100 | -> | Plus |
2L | 4902664..4902905 | 1077..1318 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:54:27 Download gff for
BS15729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4893955..4893994 | 17..56 | 100 | -> | Plus |
arm_2L | 4901402..4901917 | 57..572 | 100 | -> | Plus |
arm_2L | 4902025..4902395 | 573..943 | 100 | -> | Plus |
arm_2L | 4902461..4902593 | 944..1076 | 100 | -> | Plus |
arm_2L | 4902664..4902905 | 1077..1318 | 100 | -> | Plus |
arm_2L | 4902974..4903152 | 1319..1497 | 100 | | Plus |
BS15729.3prime Sequence
823 bp (691 high quality bases) assembled on 2006-12-21
> BS15729.3prime
ATGGTCTAGAAAGCTTTCACTTCTCGTTCTTGAGGGGCACACCCTCCTCC
TGGGTGACGTCGCTGATTCTGACACGTTCTGGAGGATTGTTCCACGGCTG
CAGTTCACCGCTGCCAAGGATGGCGAACACCACAGCTGCCGAGATATAGG
TGGCGGCCAGGATCCAGAACACAATTTGCCACGAATGGAAGGATTGATCC
TTGTAGGTGAGGGCTCCCACCATCGACGTGGAAAGGAAGCCACCAAAGGA
AGACAGCGTGTTGGCCAATCCGAAAATGGTTCCTCCAAAGTTCGGTGCAA
TATCCAAGCCATTGCCGAGATAACCAGCGGTGACTGCACCATGGGCAAAC
AGGGCCAGCGAGAAGATCGTGACAGACCAGGTGGCATCGTAGCCCAGAAA
CACTTGCACTATCATCAAAAGACCGGGAATCACAAGAGCAAAAGTAGTGA
ATAGTTTCCTGGTGGCCGTCGTGCTCAAAGTACCCTTCTTGCGCAGGTAA
TCAGCCAGGTAGGATGAAGCCACAGCCATAACGTATTTACCCAGATAAGG
CAGCGACGAGAACAAACCATTCTGTTTGATATCGAAGTGCAGAATCTTGG
ACATGAAAGTGGGCAACTGATTGACCACAGTGAAGAATCCAAAGACGGCC
AGTCCGTGACAGATGATGATTGCCCACACAGCTGGAGAGCAGAGCACCTG
ACCCCAGGGCACTTGGCTCGGACGCTTCTTAGAGGTAGTGGTGCCAATGG
CCTCCTCAATCTCCCGCCGCTCCTCGGCTGAAATCCTGGGATGAGTGGCG
GGTGTCTCATAAACAAAAGTGAA
BS15729.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3036-PA | 1482 | CG3036-RA | 676..1482 | 823..17 | 3960 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 02:29:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3036-RB | 2300 | CG3036-RB | 1189..1995 | 823..17 | 3990 | 99.6 | Minus |
CG3036-RA | 2731 | CG3036-RA | 1189..1995 | 823..17 | 3990 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 02:29:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4902144..4902406 | 823..561 | 1225 | 97.7 | Minus |
2L | 23513712 | 2L | 4902663..4902905 | 439..197 | 1215 | 100 | Minus |
2L | 23513712 | 2L | 4902974..4903153 | 196..17 | 900 | 100 | Minus |
2L | 23513712 | 2L | 4902457..4902593 | 575..439 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 02:29:11 has no hits.
BS15729.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:35:39 Download gff for
BS15729.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3036-PA | 678..1482 | 17..821 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:15:02 Download gff for
BS15729.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3036-PA | 678..1482 | 17..821 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:28:09 Download gff for
BS15729.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3036-RA | 1189..1999 | 13..823 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:02:12 Download gff for
BS15729.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3036-RA | 1189..1999 | 13..823 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:02:12 Download gff for
BS15729.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4902144..4902395 | 572..823 | 98 | -> | Minus |
2L | 4902461..4902593 | 439..571 | 100 | -> | Minus |
2L | 4902664..4902905 | 197..438 | 100 | -> | Minus |
2L | 4902974..4903157 | 13..196 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:28:09 Download gff for
BS15729.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4902144..4902395 | 572..823 | 98 | -> | Minus |
arm_2L | 4902461..4902593 | 439..571 | 100 | -> | Minus |
arm_2L | 4902664..4902905 | 197..438 | 100 | -> | Minus |
arm_2L | 4902974..4903157 | 13..196 | 98 | | Minus |
BS15729.5prime Sequence
758 bp (688 high quality bases) assembled on 2006-12-21
> BS15729.5prime
GAAGTTATCAGTCGACATGTCCAACACGGAGAAAGGAGGTCTGCAAAGAG
TGCGAAACTTTCTGTCATGCCGCCAAGTTCTGAACCTGCTGACCATGCTC
GGCTTCATGCTGAACTACGCCCTGCGAGTGAACCTCACCATTGCCATCGT
GGACATGGTCCGACCCAATGTCACATCAGCGGTGAATGCCACTCTAGTGG
GGAATAGTACGGCGGCCAATAGCACCGCATCGCCTGATGGAGTGGATGTG
TACGAGGAGCGCTTTCCCTGGGACAGCTACCAGACCAACTTCGTGCTGGG
CTGCTTCTTCTGGGGCTACATCCTCACCGAACTGCCGGGCGGTCGTCTTG
CCGAGCTGATCGGTGGACGCCGCGTCTTTGGACATTCCATGCTGTGGGCC
AGTCTGCTCACCCTGATCACGCCGCTGGCGGCGCATATCAACTACGTGGT
GCTCATCGTGGTGCGAGTTGTTCTTGGCTTCATGCTGGGCGCATCCTGGC
CAGCCATTCACCCGGTGGCCGCTGTCTGGATTCCGCCCATGGAGCGCTCC
AAGTTTATGTCCAACATGATGGCTTCTTCGCTTGGTGCTGCAATCACCAT
GCCCATCTGCGGCTACCTGATCTCCGTCGCTGGCTGGGCCAGTGTTTTCT
ATTTGACGGGAGCCGTGGGTCTGCTGTGGTCCTTGGCCTGNTTCACTTTT
GTCTATGAGACACCCGCCACTCATCCCAGGATTTCAGCCGAGGAGCGGCG
GGAGATTG
BS15729.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3036-PA | 1482 | CG3036-RA | 1..742 | 17..758 | 3691 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:29:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3036-RB | 2300 | CG3036-RB | 513..1255 | 16..758 | 3704 | 99.9 | Plus |
CG3036-RA | 2731 | CG3036-RA | 513..1255 | 16..758 | 3704 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:28:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4901402..4901917 | 57..572 | 2580 | 100 | Plus |
2L | 23513712 | 2L | 4902024..4902210 | 572..758 | 924 | 99.5 | Plus |
2L | 23513712 | 2L | 4893954..4893994 | 16..56 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:28:56 has no hits.
BS15729.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:35:40 Download gff for
BS15729.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3036-PA | 1..742 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:15:04 Download gff for
BS15729.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3036-PA | 1..742 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:30:21 Download gff for
BS15729.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3036-RA | 503..1255 | 5..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:52:37 Download gff for
BS15729.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3036-RA | 503..1255 | 5..758 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:52:37 Download gff for
BS15729.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4893944..4893994 | 5..56 | 92 | -> | Plus |
2L | 4901402..4901917 | 57..572 | 100 | -> | Plus |
2L | 4902025..4902210 | 573..758 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:30:21 Download gff for
BS15729.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4893944..4893994 | 5..56 | 92 | -> | Plus |
arm_2L | 4901402..4901917 | 57..572 | 100 | -> | Plus |
arm_2L | 4902025..4902210 | 573..758 | 99 | | Plus |
BS15729.pep Sequence
Translation from 16 to 1497
> BS15729.pep
MSNTEKGGLQRVRNFLSCRQVLNLLTMLGFMLNYALRVNLTIAIVDMVRP
NVTSAVNATLVGNSTAANSTASPDGVDVYEERFPWDSYQTNFVLGCFFWG
YILTELPGGRLAELIGGRRVFGHSMLWASLLTLITPLAAHINYVVLIVVR
VVLGFMLGASWPAIHPVAAVWIPPMERSKFMSNMMASSLGAAITMPICGY
LISVAGWASVFYLTGAVGLLWSLAWFTFVYETPATHPRISAEERREIEEA
IGTTTSKKRPSHVPWGQLLCSPAVWAIIICHGLAVFGFFTVVNQLPTFMS
KILHFDIKQNGLFSSLPYLGKYVMAVASSYLADYLRKKGTLSTTATRKLF
TTFALVIPGLLMIVQVFLGYDATWSVTIFSLALFAHGAVTAGYLGNGLDI
APNFGGTIFGLANTLSSFGGFLSTSMVGALTYKDQSFHSWQIVFWILAAT
YISAAVVFAILGSGELQPWNNPPERVRISDVTQEEGVPLKNEK*
BS15729.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3036-PB | 493 | CG3036-PB | 1..493 | 1..493 | 2561 | 100 | Plus |
CG3036-PA | 493 | CG3036-PA | 1..493 | 1..493 | 2561 | 100 | Plus |
MFS10-PB | 559 | CG4330-PB | 68..549 | 19..473 | 850 | 35.7 | Plus |
MFS10-PC | 559 | CG4330-PC | 68..549 | 19..473 | 850 | 35.7 | Plus |
MFS10-PA | 559 | CG4330-PA | 68..549 | 19..473 | 850 | 35.7 | Plus |