Clone BS15729 Report

Search the DGRC for BS15729

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:157
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG3036-RA
Protein status:BS15729.pep: full length peptide match
Sequenced Size:1514

Clone Sequence Records

BS15729.complete Sequence

1514 bp assembled on 2009-12-07

GenBank Submission: KX802472

> BS15729.complete
GAAGTTATCAGTCGACATGTCCAACACGGAGAAAGGAGGTCTGCAAAGAG
TGCGAAACTTTCTGTCATGCCGCCAAGTTCTGAACCTGCTGACCATGCTC
GGCTTCATGCTGAACTACGCCCTGCGAGTGAACCTCACCATTGCCATCGT
GGACATGGTCCGACCCAATGTCACATCAGCGGTGAATGCCACTCTAGTGG
GGAATAGTACGGCGGCCAATAGCACCGCATCGCCTGATGGAGTGGATGTG
TACGAGGAGCGCTTTCCCTGGGACAGCTACCAGACCAACTTCGTGCTGGG
CTGCTTCTTCTGGGGCTACATCCTCACCGAACTGCCGGGCGGTCGTCTTG
CCGAGCTGATCGGTGGACGCCGCGTCTTTGGACATTCCATGCTGTGGGCC
AGTCTGCTCACCCTGATCACGCCGCTGGCGGCGCATATCAACTACGTGGT
GCTCATCGTGGTGCGAGTTGTTCTTGGCTTCATGCTGGGCGCATCCTGGC
CAGCCATTCACCCGGTGGCCGCTGTCTGGATTCCGCCCATGGAGCGCTCC
AAGTTTATGTCCAACATGATGGCTTCTTCGCTTGGTGCTGCAATCACCAT
GCCCATCTGCGGCTACCTGATCTCCGTCGCTGGCTGGGCCAGTGTTTTCT
ATTTGACGGGAGCCGTGGGTCTGCTGTGGTCCTTGGCCTGGTTCACTTTT
GTCTATGAGACACCCGCCACTCATCCCAGGATTTCAGCCGAGGAGCGGCG
GGAGATTGAGGAGGCCATTGGCACCACTACCTCTAAGAAGCGTCCGAGCC
ATGTGCCCTGGGGTCAGCTGCTCTGCTCTCCAGCTGTGTGGGCAATCATC
ATCTGTCACGGACTGGCCGTCTTTGGATTCTTCACTGTGGTCAATCAGTT
GCCCACTTTCATGTCCAAGATTCTGCACTTCGATATCAAACAGAATGGTT
TGTTCTCGTCGCTGCCTTATCTGGGTAAATACGTTATGGCTGTGGCTTCA
TCCTACCTGGCTGATTACCTGCGCAAGAAGGGTACTTTGAGCACGACGGC
CACCAGGAAACTATTCACTACTTTTGCTCTTGTGATTCCCGGTCTTTTGA
TGATAGTGCAAGTGTTTCTGGGCTACGATGCCACCTGGTCTGTCACGATC
TTCTCGCTGGCCCTGTTTGCCCATGGTGCAGTCACCGCTGGTTATCTCGG
CAATGGCTTGGATATTGCACCGAACTTTGGAGGAACCATTTTCGGATTGG
CCAACACGCTGTCTTCCTTTGGTGGCTTCCTTTCCACGTCGATGGTGGGA
GCCCTCACCTACAAGGATCAATCCTTCCATTCGTGGCAAATTGTGTTCTG
GATCCTGGCCGCCACCTATATCTCGGCAGCTGTGGTGTTCGCCATCCTTG
GCAGCGGTGAACTGCAGCCGTGGAACAATCCTCCAGAACGTGTCAGAATC
AGCGACGTCACCCAGGAGGAGGGTGTGCCCCTCAAGAACGAGAAGTGAAA
GCTTTCTAGACCAT

BS15729.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3036-RB 1482 CG3036-PB 1..1482 17..1498 7410 100 Plus
CG3036-RA 1482 CG3036-PA 1..1482 17..1498 7410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3036-RB 2300 CG3036-RB 513..1995 16..1498 7415 100 Plus
CG3036-RA 2731 CG3036-RA 513..1995 16..1498 7415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4901402..4901917 57..572 2580 100 Plus
2L 23513712 2L 4902024..4902406 572..954 1870 99.2 Plus
2L 23513712 2L 4902663..4902905 1076..1318 1215 100 Plus
2L 23513712 2L 4902974..4903153 1319..1498 900 100 Plus
2L 23513712 2L 4902457..4902593 940..1076 685 100 Plus
2L 23513712 2L 4893954..4893994 16..56 205 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:40:29 has no hits.

BS15729.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:34 Download gff for BS15729.complete
Subject Subject Range Query Range Percent Splice Strand
CG3036-RA 1..1482 17..1498 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:25 Download gff for BS15729.complete
Subject Subject Range Query Range Percent Splice Strand
CG3036-RA 511..1991 17..1497 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:54:27 Download gff for BS15729.complete
Subject Subject Range Query Range Percent Splice Strand
CG3036-RA 514..1994 17..1497 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:03 Download gff for BS15729.complete
Subject Subject Range Query Range Percent Splice Strand
CG3036-RA 511..1991 17..1497 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:17 Download gff for BS15729.complete
Subject Subject Range Query Range Percent Splice Strand
CG3036-RA 514..1994 17..1497 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:17 Download gff for BS15729.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4902974..4903152 1319..1497 100   Plus
2L 4893955..4893994 17..56 100 -> Plus
2L 4901402..4901917 57..572 100 -> Plus
2L 4902025..4902395 573..943 100 -> Plus
2L 4902461..4902593 944..1076 100 -> Plus
2L 4902664..4902905 1077..1318 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:54:27 Download gff for BS15729.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4893955..4893994 17..56 100 -> Plus
arm_2L 4901402..4901917 57..572 100 -> Plus
arm_2L 4902025..4902395 573..943 100 -> Plus
arm_2L 4902461..4902593 944..1076 100 -> Plus
arm_2L 4902664..4902905 1077..1318 100 -> Plus
arm_2L 4902974..4903152 1319..1497 100   Plus

BS15729.3prime Sequence

823 bp (691 high quality bases) assembled on 2006-12-21

> BS15729.3prime
ATGGTCTAGAAAGCTTTCACTTCTCGTTCTTGAGGGGCACACCCTCCTCC
TGGGTGACGTCGCTGATTCTGACACGTTCTGGAGGATTGTTCCACGGCTG
CAGTTCACCGCTGCCAAGGATGGCGAACACCACAGCTGCCGAGATATAGG
TGGCGGCCAGGATCCAGAACACAATTTGCCACGAATGGAAGGATTGATCC
TTGTAGGTGAGGGCTCCCACCATCGACGTGGAAAGGAAGCCACCAAAGGA
AGACAGCGTGTTGGCCAATCCGAAAATGGTTCCTCCAAAGTTCGGTGCAA
TATCCAAGCCATTGCCGAGATAACCAGCGGTGACTGCACCATGGGCAAAC
AGGGCCAGCGAGAAGATCGTGACAGACCAGGTGGCATCGTAGCCCAGAAA
CACTTGCACTATCATCAAAAGACCGGGAATCACAAGAGCAAAAGTAGTGA
ATAGTTTCCTGGTGGCCGTCGTGCTCAAAGTACCCTTCTTGCGCAGGTAA
TCAGCCAGGTAGGATGAAGCCACAGCCATAACGTATTTACCCAGATAAGG
CAGCGACGAGAACAAACCATTCTGTTTGATATCGAAGTGCAGAATCTTGG
ACATGAAAGTGGGCAACTGATTGACCACAGTGAAGAATCCAAAGACGGCC
AGTCCGTGACAGATGATGATTGCCCACACAGCTGGAGAGCAGAGCACCTG
ACCCCAGGGCACTTGGCTCGGACGCTTCTTAGAGGTAGTGGTGCCAATGG
CCTCCTCAATCTCCCGCCGCTCCTCGGCTGAAATCCTGGGATGAGTGGCG
GGTGTCTCATAAACAAAAGTGAA

BS15729.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG3036-PA 1482 CG3036-RA 676..1482 823..17 3960 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 02:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3036-RB 2300 CG3036-RB 1189..1995 823..17 3990 99.6 Minus
CG3036-RA 2731 CG3036-RA 1189..1995 823..17 3990 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 02:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4902144..4902406 823..561 1225 97.7 Minus
2L 23513712 2L 4902663..4902905 439..197 1215 100 Minus
2L 23513712 2L 4902974..4903153 196..17 900 100 Minus
2L 23513712 2L 4902457..4902593 575..439 685 100 Minus
Blast to na_te.dros performed on 2015-01-30 02:29:11 has no hits.

BS15729.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:35:39 Download gff for BS15729.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3036-PA 678..1482 17..821 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:15:02 Download gff for BS15729.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3036-PA 678..1482 17..821 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:28:09 Download gff for BS15729.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3036-RA 1189..1999 13..823 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:02:12 Download gff for BS15729.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3036-RA 1189..1999 13..823 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:02:12 Download gff for BS15729.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4902144..4902395 572..823 98 -> Minus
2L 4902461..4902593 439..571 100 -> Minus
2L 4902664..4902905 197..438 100 -> Minus
2L 4902974..4903157 13..196 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:28:09 Download gff for BS15729.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4902144..4902395 572..823 98 -> Minus
arm_2L 4902461..4902593 439..571 100 -> Minus
arm_2L 4902664..4902905 197..438 100 -> Minus
arm_2L 4902974..4903157 13..196 98   Minus

BS15729.5prime Sequence

758 bp (688 high quality bases) assembled on 2006-12-21

> BS15729.5prime
GAAGTTATCAGTCGACATGTCCAACACGGAGAAAGGAGGTCTGCAAAGAG
TGCGAAACTTTCTGTCATGCCGCCAAGTTCTGAACCTGCTGACCATGCTC
GGCTTCATGCTGAACTACGCCCTGCGAGTGAACCTCACCATTGCCATCGT
GGACATGGTCCGACCCAATGTCACATCAGCGGTGAATGCCACTCTAGTGG
GGAATAGTACGGCGGCCAATAGCACCGCATCGCCTGATGGAGTGGATGTG
TACGAGGAGCGCTTTCCCTGGGACAGCTACCAGACCAACTTCGTGCTGGG
CTGCTTCTTCTGGGGCTACATCCTCACCGAACTGCCGGGCGGTCGTCTTG
CCGAGCTGATCGGTGGACGCCGCGTCTTTGGACATTCCATGCTGTGGGCC
AGTCTGCTCACCCTGATCACGCCGCTGGCGGCGCATATCAACTACGTGGT
GCTCATCGTGGTGCGAGTTGTTCTTGGCTTCATGCTGGGCGCATCCTGGC
CAGCCATTCACCCGGTGGCCGCTGTCTGGATTCCGCCCATGGAGCGCTCC
AAGTTTATGTCCAACATGATGGCTTCTTCGCTTGGTGCTGCAATCACCAT
GCCCATCTGCGGCTACCTGATCTCCGTCGCTGGCTGGGCCAGTGTTTTCT
ATTTGACGGGAGCCGTGGGTCTGCTGTGGTCCTTGGCCTGNTTCACTTTT
GTCTATGAGACACCCGCCACTCATCCCAGGATTTCAGCCGAGGAGCGGCG
GGAGATTG

BS15729.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3036-PA 1482 CG3036-RA 1..742 17..758 3691 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:29:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3036-RB 2300 CG3036-RB 513..1255 16..758 3704 99.9 Plus
CG3036-RA 2731 CG3036-RA 513..1255 16..758 3704 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4901402..4901917 57..572 2580 100 Plus
2L 23513712 2L 4902024..4902210 572..758 924 99.5 Plus
2L 23513712 2L 4893954..4893994 16..56 205 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:28:56 has no hits.

BS15729.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:35:40 Download gff for BS15729.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3036-PA 1..742 17..758 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:15:04 Download gff for BS15729.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3036-PA 1..742 17..758 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:30:21 Download gff for BS15729.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3036-RA 503..1255 5..758 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:52:37 Download gff for BS15729.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3036-RA 503..1255 5..758 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:52:37 Download gff for BS15729.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4893944..4893994 5..56 92 -> Plus
2L 4901402..4901917 57..572 100 -> Plus
2L 4902025..4902210 573..758 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:30:21 Download gff for BS15729.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4893944..4893994 5..56 92 -> Plus
arm_2L 4901402..4901917 57..572 100 -> Plus
arm_2L 4902025..4902210 573..758 99   Plus

BS15729.pep Sequence

Translation from 16 to 1497

> BS15729.pep
MSNTEKGGLQRVRNFLSCRQVLNLLTMLGFMLNYALRVNLTIAIVDMVRP
NVTSAVNATLVGNSTAANSTASPDGVDVYEERFPWDSYQTNFVLGCFFWG
YILTELPGGRLAELIGGRRVFGHSMLWASLLTLITPLAAHINYVVLIVVR
VVLGFMLGASWPAIHPVAAVWIPPMERSKFMSNMMASSLGAAITMPICGY
LISVAGWASVFYLTGAVGLLWSLAWFTFVYETPATHPRISAEERREIEEA
IGTTTSKKRPSHVPWGQLLCSPAVWAIIICHGLAVFGFFTVVNQLPTFMS
KILHFDIKQNGLFSSLPYLGKYVMAVASSYLADYLRKKGTLSTTATRKLF
TTFALVIPGLLMIVQVFLGYDATWSVTIFSLALFAHGAVTAGYLGNGLDI
APNFGGTIFGLANTLSSFGGFLSTSMVGALTYKDQSFHSWQIVFWILAAT
YISAAVVFAILGSGELQPWNNPPERVRISDVTQEEGVPLKNEK*

BS15729.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3036-PB 493 CG3036-PB 1..493 1..493 2561 100 Plus
CG3036-PA 493 CG3036-PA 1..493 1..493 2561 100 Plus
MFS10-PB 559 CG4330-PB 68..549 19..473 850 35.7 Plus
MFS10-PC 559 CG4330-PC 68..549 19..473 850 35.7 Plus
MFS10-PA 559 CG4330-PA 68..549 19..473 850 35.7 Plus