Clone Sequence Records
BS15747.5prime Sequence
309 bp (309 high quality bases) assembled on 2006-12-21
> BS15747.5prime
GAAGTTATCAGTCGACATGGCATTGCCCCAGATCAGCACCGCAGACCAGG
CCAAGCTGCAGCTGATGCAGGAAATGGAGATCGAAATGATGTCCGATTTA
TATAACCGCATGACGAACGCTTGCCACAAAAAGTGCATTCCGCCGCGCTA
CTCCGAGTCGGAGTTGGGCAAAGGCGAGATGGTGTGCATCGATCGCTGTG
TGGCCAAATATCTGGACATTCACGAGAAGATCGGCAAGAAGCTGACGGCC
ATGTCCATGCAGGACGAGGAGCTGATGAAGAAGATGTCTAGTTAAAAGCT
TTCTAGACC
BS15747.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9878-PB | 279 | Tim10-RB | 1..279 | 17..295 | 1395 | 100 | Plus |
CG9878-PA | 279 | Tim10-RA | 1..279 | 17..295 | 1395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:58:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim10-RA | 691 | CG9878-RA | 281..559 | 17..295 | 1395 | 100 | Plus |
Tim10-RB | 762 | CG9878-RB | 352..630 | 17..295 | 1395 | 100 | Plus |
CG42497-RA | 691 | CG42497-RA | 281..559 | 17..295 | 1395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:58:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21690637..21690788 | 168..17 | 760 | 100 | Minus |
2R | 25286936 | 2R | 21690347..21690475 | 295..167 | 645 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 14:58:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 6386..6442 | 99..44 | 138 | 73.7 | Minus |
BS15747.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:36:13 Download gff for
BS15747.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim10-PB | 1..279 | 17..295 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:15:48 Download gff for
BS15747.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9878-PA | 1..279 | 17..295 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:22:57 Download gff for
BS15747.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42497-RA | 275..562 | 9..300 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:48:40 Download gff for
BS15747.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42497-RA | 275..562 | 9..300 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:48:40 Download gff for
BS15747.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21690344..21690474 | 168..300 | 97 | <- | Minus |
2R | 21690638..21690792 | 9..167 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:22:57 Download gff for
BS15747.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17577849..17577979 | 168..300 | 97 | <- | Minus |
arm_2R | 17578143..17578297 | 9..167 | 97 | | Minus |
BS15747.complete Sequence
311 bp assembled on 2006-11-29
GenBank Submission: FJ637956
> BS15747.complete
GAAGTTATCAGTCGACATGGCATTGCCCCAGATCAGCACCGCAGACCAGG
CCAAGCTGCAGCTGATGCAGGAAATGGAGATCGAAATGATGTCCGATTTA
TATAACCGCATGACGAACGCTTGCCACAAAAAGTGCATTCCGCCGCGCTA
CTCCGAGTCGGAGTTGGGCAAAGGCGAGATGGTGTGCATCGATCGCTGTG
TGGCCAAATATCTGGACATTCACGAGAAGATCGGCAAGAAGCTGACGGCC
ATGTCCATGCAGGACGAGGAGCTGATGAAGAAGATGTCTAGTTAAAAGCT
TTCTAGACCAT
BS15747.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:00:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim10-RA | 279 | CG9878-PA | 1..279 | 17..295 | 1395 | 100 | Plus |
Tim10-RB | 279 | CG9878-PB | 1..279 | 17..295 | 1395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:00:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim10-RA | 691 | CG9878-RA | 281..559 | 17..295 | 1395 | 100 | Plus |
Tim10-RB | 762 | CG9878-RB | 352..630 | 17..295 | 1395 | 100 | Plus |
CG42497-RA | 691 | CG42497-RA | 281..559 | 17..295 | 1395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:00:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21690637..21690788 | 168..17 | 760 | 100 | Minus |
2R | 25286936 | 2R | 21690347..21690475 | 295..167 | 645 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 07:00:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 6386..6442 | 99..44 | 138 | 73.7 | Minus |
BS15747.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:38:15 Download gff for
BS15747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim10-RA | 1..279 | 17..295 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:20 Download gff for
BS15747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim10-RB | 271..558 | 9..300 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:22 Download gff for
BS15747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42497-RA | 281..557 | 17..293 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:38:15 Download gff for
BS15747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim10-RB | 271..558 | 9..300 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:47 Download gff for
BS15747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42497-RA | 281..557 | 17..293 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:47 Download gff for
BS15747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21690349..21690474 | 168..293 | 100 | <- | Minus |
2R | 21690638..21690788 | 17..167 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:22 Download gff for
BS15747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17577854..17577979 | 168..293 | 100 | <- | Minus |
arm_2R | 17578143..17578293 | 17..167 | 100 | | Minus |
BS15747.3prime Sequence
309 bp (309 high quality bases) assembled on 2006-12-21
> BS15747.3prime
ATGGTCTAGAAAGCTTTTAACTATACATCTTCTTCATCAGCTCCTCGTCC
TGCATGGACATGGCCGTCAGCTTCTTGCCGATCTTCTCGTGAATGTCCAG
ATATTTGGCCACACAGCGATCGATGCACACCATCTCGCCTTTGCCCAACT
CCGACTCGGAGTAGCGCGGCGGAATGCACTTTTTGTGGCAAGCGTTCGTC
ATGCGGTTATATAAATCGGACATCATTTCGATCTCCATTTCCTGCATCAG
CTGCAGCTTGGCCTGGTCTGCGGTGCTGATCTGGGGCAATGCCATGTCGA
CTGATAACT
BS15747.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9878-PB | 279 | Tim10-RB | 1..279 | 295..17 | 1370 | 99.6 | Minus |
CG9878-PA | 279 | Tim10-RA | 1..279 | 295..17 | 1370 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:05:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim10-RA | 691 | CG9878-RA | 281..559 | 295..17 | 1380 | 99.6 | Minus |
Tim10-RB | 762 | CG9878-RB | 352..630 | 295..17 | 1380 | 99.6 | Minus |
CG42497-RA | 691 | CG42497-RA | 281..559 | 295..17 | 1380 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:05:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21690637..21690788 | 144..295 | 760 | 100 | Plus |
2R | 25286936 | 2R | 21690347..21690475 | 17..145 | 630 | 99.2 | Plus |
Blast to na_te.dros performed 2015-02-10 17:05:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 6386..6442 | 213..268 | 138 | 73.7 | Plus |
BS15747.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:36:12 Download gff for
BS15747.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim10-PB | 1..279 | 17..295 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:15:46 Download gff for
BS15747.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9878-PA | 1..279 | 17..295 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 18:33:51 Download gff for
BS15747.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42497-RA | 275..562 | 12..303 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:32 Download gff for
BS15747.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42497-RA | 275..562 | 12..303 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:32 Download gff for
BS15747.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21690344..21690474 | 12..144 | 96 | <- | Plus |
2R | 21690638..21690792 | 145..303 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 18:33:51 Download gff for
BS15747.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17577849..17577979 | 12..144 | 96 | <- | Plus |
arm_2R | 17578143..17578297 | 145..303 | 97 | | Plus |
BS15747.pep Sequence
Translation from 16 to 294
> BS15747.pep
MALPQISTADQAKLQLMQEMEIEMMSDLYNRMTNACHKKCIPPRYSESEL
GKGEMVCIDRCVAKYLDIHEKIGKKLTAMSMQDEELMKKMSS*
BS15747.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim10-PA | 92 | CG9878-PA | 1..92 | 1..92 | 475 | 100 | Plus |
Tim10-PB | 92 | CG9878-PB | 1..92 | 1..92 | 475 | 100 | Plus |