Clone Sequence Records
BS15750.3prime Sequence
279 bp (279 high quality bases) assembled on 2006-12-21
> BS15750.3prime
ATGGTCTAGAAAGCTTTCACCCTCCTAGATACGAGTAGTATGGATACGTG
GCGTATGCGCCATAAACCGGTGCATACGCATACGCCGCGTAGGCCTCTTA
GCTGGCATACGCCGGATAGTAAGCGGCGGAGGAGGGAGCCAGCCAAGAGG
CACCCGCTCCGGTGGCATAACTCACTGGCGTCGTGACCAACAGCTGGGGC
TTCGCCTGGCTCAGGGCCACGAGCCACAATGCGAACATCAAGACCTTGAC
CAACATGACTCCCATGTCGACTGATAACT
BS15750.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8012-PA | 249 | CG8012-RA | 1..167 | 265..99 | 835 | 100 | Minus |
CG8012-PA | 249 | CG8012-RA | 171..242 | 95..24 | 360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:04:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8012-RB | 851 | CG8012-RB | 223..472 | 265..16 | 1175 | 98 | Minus |
CG8012-RA | 461 | CG8012-RA | 72..321 | 265..16 | 1175 | 98 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:04:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8215599..8215819 | 236..16 | 1030 | 97.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:04:27 has no hits.
BS15750.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:36:17 Download gff for
BS15750.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8012-PA | 1..249 | 17..265 | 97 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:15:53 Download gff for
BS15750.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8012-PA | 1..249 | 17..265 | 97 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 18:33:47 Download gff for
BS15750.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8012-RA | 63..325 | 12..279 | 95 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:27 Download gff for
BS15750.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8012-RA | 63..325 | 12..279 | 95 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:27 Download gff for
BS15750.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8215600..8215823 | 12..235 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 18:33:47 Download gff for
BS15750.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8208700..8208923 | 12..235 | 96 | | Minus |
BS15750.5prime Sequence
279 bp (279 high quality bases) assembled on 2006-12-21
> BS15750.5prime
GAAGTTATCCTTCGACATGGGAGTCATGTTGGTCAAGGTCTTGATGTTCG
CATTGTGGCTCGTGGCCCTGAGCCAGGCGAAGCCCCAGCTGTTGGTCACG
ACGCCAGTGAGTTATGCCACCGGAGCGGGTGCCTCTTGGCTGGCTCCCTC
CTCCGCCGCTTACTATCCGGCGTATGCCAGCTATCCGGCCTACGCGGCGT
ATGCGTATGCACCGGTTTATGGCGCATACGCCACGTATCCATACTACTCG
TATCTAGGGCGGTGAAAGCTTTCTAGACC
BS15750.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8012-PA | 249 | CG8012-RA | 1..249 | 17..265 | 1245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:39:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8012-RB | 851 | CG8012-RB | 223..472 | 17..266 | 1250 | 100 | Plus |
CG8012-RA | 461 | CG8012-RA | 72..321 | 17..266 | 1250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:39:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8215599..8215819 | 46..266 | 1105 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:39:29 has no hits.
BS15750.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:36:19 Download gff for
BS15750.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8012-PA | 1..249 | 17..265 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:15:55 Download gff for
BS15750.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8012-PA | 1..249 | 17..265 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 18:31:53 Download gff for
BS15750.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8012-RA | 68..328 | 12..274 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:27 Download gff for
BS15750.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8012-RA | 68..328 | 12..274 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:27 Download gff for
BS15750.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8215498..8215531 | 12..46 | 97 | -> | Plus |
3L | 8215600..8215826 | 47..274 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 18:31:53 Download gff for
BS15750.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8208598..8208631 | 12..46 | 97 | -> | Plus |
arm_3L | 8208700..8208926 | 47..274 | 98 | | Plus |
BS15750.complete Sequence
281 bp assembled on 2006-11-29
GenBank Submission: FJ637957
> BS15750.complete
GAAGTTATCAGTCGACATGGGAGTCATGTTGGTCAAGGTCTTGATGTTCG
CATTGTGGCTCGTGGCCCTGAGCCAGGCGAAGCCCCAGCTGTTGGTCACG
ACGCCAGTGAGTTATGCCACCGGAGCGGGTGCCTCTTGGCTGGCTCCCTC
CTCCGCCGCTTACTATCCGGCGTATGCCAGCTATCCGGCCTACGCGGCGT
ATGCGTATGCACCGGTTTATGGCGCATACGCCACGTATCCATACTACTCG
TATCTAGGGCGGTGAAAGCTTTCTAGACCAT
BS15750.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:41:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8012-RB | 249 | CG8012-PB | 1..249 | 17..265 | 1245 | 100 | Plus |
CG8012-RA | 249 | CG8012-PA | 1..249 | 17..265 | 1245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8012-RB | 851 | CG8012-RB | 223..472 | 17..266 | 1250 | 100 | Plus |
CG8012-RA | 461 | CG8012-RA | 72..321 | 17..266 | 1250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:41:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8215599..8215819 | 46..266 | 1105 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:41:57 has no hits.
BS15750.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:57 Download gff for
BS15750.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8012-RA | 1..249 | 17..265 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:31:19 Download gff for
BS15750.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8012-RA | 63..328 | 3..274 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:57 Download gff for
BS15750.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8012-RA | 72..319 | 17..264 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:58 Download gff for
BS15750.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8012-RA | 63..328 | 3..274 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:39 Download gff for
BS15750.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8012-RA | 72..319 | 17..264 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:39 Download gff for
BS15750.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8215502..8215531 | 17..46 | 100 | -> | Plus |
3L | 8215600..8215817 | 47..264 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:57 Download gff for
BS15750.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8208602..8208631 | 17..46 | 100 | -> | Plus |
arm_3L | 8208700..8208917 | 47..264 | 100 | | Plus |
BS15750.pep Sequence
Translation from 16 to 264
> BS15750.pep
MGVMLVKVLMFALWLVALSQAKPQLLVTTPVSYATGAGASWLAPSSAAYY
PAYASYPAYAAYAYAPVYGAYATYPYYSYLGR*
BS15750.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:35:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8012-PB | 82 | CG8012-PB | 1..82 | 1..82 | 429 | 100 | Plus |
CG8012-PA | 82 | CG8012-PA | 1..82 | 1..82 | 429 | 100 | Plus |