Clone BS15751 Report

Search the DGRC for BS15751

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:157
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptRcd4-RA
Protein status:BS15751.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15751.3prime Sequence

630 bp (630 high quality bases) assembled on 2006-12-21

> BS15751.3prime
ATGGTCTAGAAAGCTTCTACCTTTATGTTCTCCTATATGCGCCGAAAAAA
TCGAAGGGCCCTGGTTCCCAATCCAAGTGGAGTACTGGTTCCTTATCAGC
CATTATCATGGGATCTACTTTCTCCGCATAGTCGGCTAGCTGGGGCTCGC
TTATGGCCTTGCATGATTCCGATTCTTTCGATGTGTGCTTTAAGGCATCC
GGCTTTCTATTGTGCGGCACCAGCACAGAATCGTTGACATTGAGAGGCAC
CAGGACCCCGAATACAACACGATTCGGAGCGAAGTTCATCTTTTTGGTGA
TCTGTGGGGCGATAAAGTTAGAATCCTTATTAAGGTTCATATCCAGCTTA
ATGTTGGATATGATATGGGCCTCGTTCTGCTTGCGCACGGTGGTGTTGCA
TTTGGGCACGGCTAACTTGATCTCCGGGTTTTTCCCGTTGGTCATTGCAC
CTTCTTTGGCTTTCGGACTGTCCGGCGAACTGTTATCCGCATGAGAACCG
TTGCAGGATTCGACGAGCACATTCGGCGGTGCAGACGACAGTTTGGCCAC
AGAAACGCGTCGCGCTGTGAAATTCCTTTGGTTCGCATGTACTCGGTTCC
TACGTTTGTGAGGCATGTCGACTGATAACT

BS15751.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17295-PA 600 CG17295-RA 1..593 616..24 2865 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd4-RB 681 CG17295-RB 44..636 616..24 2905 99.3 Minus
Rcd4-RA 733 CG17295-RA 96..688 616..24 2905 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8382956..8383270 616..302 1575 100 Minus
2L 23513712 2L 8383327..8383612 309..24 1355 98.3 Minus
Blast to na_te.dros performed on 2015-02-12 11:43:38 has no hits.

BS15751.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:36:20 Download gff for BS15751.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17295-PA 1..600 17..616 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:15:56 Download gff for BS15751.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17295-PA 1..600 17..616 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 23:20:06 Download gff for BS15751.3prime
Subject Subject Range Query Range Percent Splice Strand
Rcd4-RA 96..699 11..616 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:52:49 Download gff for BS15751.3prime
Subject Subject Range Query Range Percent Splice Strand
Rcd4-RA 96..699 11..616 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:52:49 Download gff for BS15751.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8382956..8383270 302..616 100 -> Minus
2L 8383335..8383623 11..301 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 23:20:06 Download gff for BS15751.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8382956..8383270 302..616 100 -> Minus
arm_2L 8383335..8383623 11..301 96   Minus

BS15751.5prime Sequence

630 bp (630 high quality bases) assembled on 2006-12-21

> BS15751.5prime
GAAGTTATCAGTCGACATGCCTCACAAACGTAGGAACCGAGTACATGCGA
ACCAAAGGAATTTCACAGCGCGACGCGTTTCTGTGGCCAAACTGTCGTCT
GCACCGCCGAATGTGCTCGTCGAATCCTGCAACGGTTCTCATGCGGATAA
CAGTTCGCCGGACAGTCCGAAAGCCAAAGAAGGTGCAATGACCAACGGGA
AAAACCCGGAGATCAAGTTAGCCGTGCCCAAATGCAACACCACCGTGCGC
AAGCAGAACGAGGCCCATATCATATCCAACATTAAGCTGGATATGAACCT
TAATAAGGATTCTAACTTTATCGCCCCACAGATCACCAAAAAGATGAACT
TCGCTCCGAATCGTGTTGTATTCGGGGTCCTGGTGCCTCTCAATGTCAAC
GATTCTGTGCTGGTGCCGCACAATAGAAAGCCGGATGCCTTAAAGCACAC
ATCGAAAGAATCGGAATCATGCAAGGCCATAAGCGAGCCCCAGCTAGCCG
ACTATGCGGAGAAAGTAGATCCCATGATAATGGCTGTTAAGGAACCAGTA
CTCCACTTGGATTGGGAACCAGGGCCCTTCGATTTTTTCGGCGCATATAG
GAGAACATACAACTAGAAGCTTTCTAGACC

BS15751.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG17295-PA 600 CG17295-RA 1..596 17..612 2905 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 23:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd4-RB 681 CG17295-RB 44..644 17..617 2945 99.3 Plus
Rcd4-RA 733 CG17295-RA 96..696 17..617 2945 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 23:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8382956..8383270 17..331 1575 100 Plus
2L 23513712 2L 8383327..8383620 324..617 1395 98.3 Plus
Blast to na_te.dros performed on 2015-02-05 23:50:28 has no hits.

BS15751.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:36:20 Download gff for BS15751.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17295-PA 1..600 17..616 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:15:57 Download gff for BS15751.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17295-PA 1..600 17..616 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 03:32:46 Download gff for BS15751.5prime
Subject Subject Range Query Range Percent Splice Strand
Rcd4-RA 96..699 17..622 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:33:20 Download gff for BS15751.5prime
Subject Subject Range Query Range Percent Splice Strand
Rcd4-RA 96..699 17..622 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 00:33:20 Download gff for BS15751.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8382956..8383270 17..331 100 -> Plus
2L 8383335..8383623 332..622 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 03:32:46 Download gff for BS15751.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8382956..8383270 17..331 100 -> Plus
arm_2L 8383335..8383623 332..622 97   Plus

BS15751.complete Sequence

632 bp assembled on 2006-11-29

GenBank Submission: FJ637958

> BS15751.complete
GAAGTTATCAGTCGACATGCCTCACAAACGTAGGAACCGAGTACATGCGA
ACCAAAGGAATTTCACAGCGCGACGCGTTTCTGTGGCCAAACTGTCGTCT
GCACCGCCGAATGTGCTCGTCGAATCCTGCAACGGTTCTCATGCGGATAA
CAGTTCGCCGGACAGTCCGAAAGCCAAAGAAGGTGCAATGACCAACGGGA
AAAACCCGGAGATCAAGTTAGCCGTGCCCAAATGCAACACCACCGTGCGC
AAGCAGAACGAGGCCCATATCATATCCAACATTAAGCTGGATATGAACCT
TAATAAGGATTCTAACTTTATCGCCCCACAGATCACCAAAAAGATGAACT
TCGCTCCGAATCGTGTTGTATTCGGGGTCCTGGTGCCTCTCAATGTCAAC
GATTCTGTGCTGGTGCCGCACAATAGAAAGCCGGATGCCTTAAAGCACAC
ATCGAAAGAATCGGAATCATGCAAGGCCATAAGCGAGCCCCAGCTAGCCG
ACTATGCGGAGAAAGTAGATCCCATGATAATGGCTGTTAAGGAACCAGTA
CTCCACTTGGATTGGGAACCAGGGCCCTTCGATTTTTTCGGCGCATATAG
GAGAACATACAACTAGAAGCTTTCTAGACCAT

BS15751.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd4-RB 600 CG17295-PB 1..600 17..616 2940 99.3 Plus
Rcd4-RA 600 CG17295-PA 1..600 17..616 2940 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd4-RB 681 CG17295-RB 44..644 17..617 2945 99.3 Plus
Rcd4-RA 733 CG17295-RA 96..696 17..617 2945 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8382956..8383270 17..331 1575 100 Plus
2L 23513712 2L 8383327..8383620 324..617 1395 98.3 Plus
Blast to na_te.dros performed on 2014-11-26 21:51:05 has no hits.

BS15751.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:06 Download gff for BS15751.complete
Subject Subject Range Query Range Percent Splice Strand
CG17295-RA 1..600 17..616 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:33 Download gff for BS15751.complete
Subject Subject Range Query Range Percent Splice Strand
CG17295-RA 142..745 17..622 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:38:47 Download gff for BS15751.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd4-RA 96..695 17..616 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:06 Download gff for BS15751.complete
Subject Subject Range Query Range Percent Splice Strand
CG17295-RA 142..745 17..622 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:44:04 Download gff for BS15751.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd4-RA 96..695 17..616 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:44:04 Download gff for BS15751.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8382956..8383270 17..331 100 -> Plus
2L 8383335..8383619 332..616 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:38:47 Download gff for BS15751.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8382956..8383270 17..331 100 -> Plus
arm_2L 8383335..8383619 332..616 98   Plus

BS15751.pep Sequence

Translation from 16 to 615

> BS15751.pep
MPHKRRNRVHANQRNFTARRVSVAKLSSAPPNVLVESCNGSHADNSSPDS
PKAKEGAMTNGKNPEIKLAVPKCNTTVRKQNEAHIISNIKLDMNLNKDSN
FIAPQITKKMNFAPNRVVFGVLVPLNVNDSVLVPHNRKPDALKHTSKESE
SCKAISEPQLADYAEKVDPMIMAVKEPVLHLDWEPGPFDFFGAYRRTYN*

BS15751.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd4-PB 199 CG17295-PB 1..199 1..199 1048 100 Plus
Rcd4-PA 199 CG17295-PA 1..199 1..199 1048 100 Plus