Clone Sequence Records
BS15751.3prime Sequence
630 bp (630 high quality bases) assembled on 2006-12-21
> BS15751.3prime
ATGGTCTAGAAAGCTTCTACCTTTATGTTCTCCTATATGCGCCGAAAAAA
TCGAAGGGCCCTGGTTCCCAATCCAAGTGGAGTACTGGTTCCTTATCAGC
CATTATCATGGGATCTACTTTCTCCGCATAGTCGGCTAGCTGGGGCTCGC
TTATGGCCTTGCATGATTCCGATTCTTTCGATGTGTGCTTTAAGGCATCC
GGCTTTCTATTGTGCGGCACCAGCACAGAATCGTTGACATTGAGAGGCAC
CAGGACCCCGAATACAACACGATTCGGAGCGAAGTTCATCTTTTTGGTGA
TCTGTGGGGCGATAAAGTTAGAATCCTTATTAAGGTTCATATCCAGCTTA
ATGTTGGATATGATATGGGCCTCGTTCTGCTTGCGCACGGTGGTGTTGCA
TTTGGGCACGGCTAACTTGATCTCCGGGTTTTTCCCGTTGGTCATTGCAC
CTTCTTTGGCTTTCGGACTGTCCGGCGAACTGTTATCCGCATGAGAACCG
TTGCAGGATTCGACGAGCACATTCGGCGGTGCAGACGACAGTTTGGCCAC
AGAAACGCGTCGCGCTGTGAAATTCCTTTGGTTCGCATGTACTCGGTTCC
TACGTTTGTGAGGCATGTCGACTGATAACT
BS15751.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17295-PA | 600 | CG17295-RA | 1..593 | 616..24 | 2865 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:43:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd4-RB | 681 | CG17295-RB | 44..636 | 616..24 | 2905 | 99.3 | Minus |
Rcd4-RA | 733 | CG17295-RA | 96..688 | 616..24 | 2905 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:43:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8382956..8383270 | 616..302 | 1575 | 100 | Minus |
2L | 23513712 | 2L | 8383327..8383612 | 309..24 | 1355 | 98.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:43:38 has no hits.
BS15751.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:36:20 Download gff for
BS15751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17295-PA | 1..600 | 17..616 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:15:56 Download gff for
BS15751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17295-PA | 1..600 | 17..616 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 23:20:06 Download gff for
BS15751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcd4-RA | 96..699 | 11..616 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:52:49 Download gff for
BS15751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcd4-RA | 96..699 | 11..616 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:52:49 Download gff for
BS15751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8382956..8383270 | 302..616 | 100 | -> | Minus |
2L | 8383335..8383623 | 11..301 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 23:20:06 Download gff for
BS15751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8382956..8383270 | 302..616 | 100 | -> | Minus |
arm_2L | 8383335..8383623 | 11..301 | 96 | | Minus |
BS15751.5prime Sequence
630 bp (630 high quality bases) assembled on 2006-12-21
> BS15751.5prime
GAAGTTATCAGTCGACATGCCTCACAAACGTAGGAACCGAGTACATGCGA
ACCAAAGGAATTTCACAGCGCGACGCGTTTCTGTGGCCAAACTGTCGTCT
GCACCGCCGAATGTGCTCGTCGAATCCTGCAACGGTTCTCATGCGGATAA
CAGTTCGCCGGACAGTCCGAAAGCCAAAGAAGGTGCAATGACCAACGGGA
AAAACCCGGAGATCAAGTTAGCCGTGCCCAAATGCAACACCACCGTGCGC
AAGCAGAACGAGGCCCATATCATATCCAACATTAAGCTGGATATGAACCT
TAATAAGGATTCTAACTTTATCGCCCCACAGATCACCAAAAAGATGAACT
TCGCTCCGAATCGTGTTGTATTCGGGGTCCTGGTGCCTCTCAATGTCAAC
GATTCTGTGCTGGTGCCGCACAATAGAAAGCCGGATGCCTTAAAGCACAC
ATCGAAAGAATCGGAATCATGCAAGGCCATAAGCGAGCCCCAGCTAGCCG
ACTATGCGGAGAAAGTAGATCCCATGATAATGGCTGTTAAGGAACCAGTA
CTCCACTTGGATTGGGAACCAGGGCCCTTCGATTTTTTCGGCGCATATAG
GAGAACATACAACTAGAAGCTTTCTAGACC
BS15751.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17295-PA | 600 | CG17295-RA | 1..596 | 17..612 | 2905 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 23:50:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd4-RB | 681 | CG17295-RB | 44..644 | 17..617 | 2945 | 99.3 | Plus |
Rcd4-RA | 733 | CG17295-RA | 96..696 | 17..617 | 2945 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 23:50:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8382956..8383270 | 17..331 | 1575 | 100 | Plus |
2L | 23513712 | 2L | 8383327..8383620 | 324..617 | 1395 | 98.3 | Plus |
Blast to na_te.dros performed on 2015-02-05 23:50:28 has no hits.
BS15751.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:36:20 Download gff for
BS15751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17295-PA | 1..600 | 17..616 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:15:57 Download gff for
BS15751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17295-PA | 1..600 | 17..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 03:32:46 Download gff for
BS15751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcd4-RA | 96..699 | 17..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:33:20 Download gff for
BS15751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcd4-RA | 96..699 | 17..622 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 00:33:20 Download gff for
BS15751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8382956..8383270 | 17..331 | 100 | -> | Plus |
2L | 8383335..8383623 | 332..622 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 03:32:46 Download gff for
BS15751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8382956..8383270 | 17..331 | 100 | -> | Plus |
arm_2L | 8383335..8383623 | 332..622 | 97 | | Plus |
BS15751.complete Sequence
632 bp assembled on 2006-11-29
GenBank Submission: FJ637958
> BS15751.complete
GAAGTTATCAGTCGACATGCCTCACAAACGTAGGAACCGAGTACATGCGA
ACCAAAGGAATTTCACAGCGCGACGCGTTTCTGTGGCCAAACTGTCGTCT
GCACCGCCGAATGTGCTCGTCGAATCCTGCAACGGTTCTCATGCGGATAA
CAGTTCGCCGGACAGTCCGAAAGCCAAAGAAGGTGCAATGACCAACGGGA
AAAACCCGGAGATCAAGTTAGCCGTGCCCAAATGCAACACCACCGTGCGC
AAGCAGAACGAGGCCCATATCATATCCAACATTAAGCTGGATATGAACCT
TAATAAGGATTCTAACTTTATCGCCCCACAGATCACCAAAAAGATGAACT
TCGCTCCGAATCGTGTTGTATTCGGGGTCCTGGTGCCTCTCAATGTCAAC
GATTCTGTGCTGGTGCCGCACAATAGAAAGCCGGATGCCTTAAAGCACAC
ATCGAAAGAATCGGAATCATGCAAGGCCATAAGCGAGCCCCAGCTAGCCG
ACTATGCGGAGAAAGTAGATCCCATGATAATGGCTGTTAAGGAACCAGTA
CTCCACTTGGATTGGGAACCAGGGCCCTTCGATTTTTTCGGCGCATATAG
GAGAACATACAACTAGAAGCTTTCTAGACCAT
BS15751.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:51:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd4-RB | 600 | CG17295-PB | 1..600 | 17..616 | 2940 | 99.3 | Plus |
Rcd4-RA | 600 | CG17295-PA | 1..600 | 17..616 | 2940 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:51:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd4-RB | 681 | CG17295-RB | 44..644 | 17..617 | 2945 | 99.3 | Plus |
Rcd4-RA | 733 | CG17295-RA | 96..696 | 17..617 | 2945 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:51:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8382956..8383270 | 17..331 | 1575 | 100 | Plus |
2L | 23513712 | 2L | 8383327..8383620 | 324..617 | 1395 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:51:05 has no hits.
BS15751.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:06 Download gff for
BS15751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17295-RA | 1..600 | 17..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:33 Download gff for
BS15751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17295-RA | 142..745 | 17..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:38:47 Download gff for
BS15751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcd4-RA | 96..695 | 17..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:06 Download gff for
BS15751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17295-RA | 142..745 | 17..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:44:04 Download gff for
BS15751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcd4-RA | 96..695 | 17..616 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:44:04 Download gff for
BS15751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8382956..8383270 | 17..331 | 100 | -> | Plus |
2L | 8383335..8383619 | 332..616 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:38:47 Download gff for
BS15751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8382956..8383270 | 17..331 | 100 | -> | Plus |
arm_2L | 8383335..8383619 | 332..616 | 98 | | Plus |
BS15751.pep Sequence
Translation from 16 to 615
> BS15751.pep
MPHKRRNRVHANQRNFTARRVSVAKLSSAPPNVLVESCNGSHADNSSPDS
PKAKEGAMTNGKNPEIKLAVPKCNTTVRKQNEAHIISNIKLDMNLNKDSN
FIAPQITKKMNFAPNRVVFGVLVPLNVNDSVLVPHNRKPDALKHTSKESE
SCKAISEPQLADYAEKVDPMIMAVKEPVLHLDWEPGPFDFFGAYRRTYN*
BS15751.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd4-PB | 199 | CG17295-PB | 1..199 | 1..199 | 1048 | 100 | Plus |
Rcd4-PA | 199 | CG17295-PA | 1..199 | 1..199 | 1048 | 100 | Plus |