Clone Sequence Records
BS15761.5prime Sequence
225 bp (225 high quality bases) assembled on 2006-12-21
> BS15761.5prime
GAAGTTATCAGTCGACATGGAGTCTTCCTGCAAATCCTGGCTGTTGTGCA
GCATCCTGGTGCTTGTGGCCTTTTCGTTGGGTACGTATTTTGGGCTACGA
AGAAGAAGACTGCCACGCCCCCTTTCGGGCAAGGGCCGTTATGTAATCGT
AAAGGAAAGAAATGCAAATGAAGGCCTAAAAACTCTGTTAACTCTGCTAA
CCGTTTCTTAGAAGCTTTCTAGACC
BS15761.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11348-PB | 195 | nAcRbeta-64B-RB | 1..195 | 17..211 | 975 | 100 | Plus |
CG11348-PA | 1566 | nAcRbeta-64B-RA | 1..64 | 17..80 | 320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 02:37:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nAChRbeta1-RB | 818 | CG11348-RB | 240..435 | 16..211 | 980 | 100 | Plus |
nAChRbeta1-RA | 2460 | CG11348-RA | 240..304 | 16..80 | 325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 02:37:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4429651..4429846 | 16..211 | 980 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 02:37:45 has no hits.
BS15761.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:36:39 Download gff for
BS15761.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11348-PB | 1..195 | 17..211 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:16:19 Download gff for
BS15761.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11348-PB | 1..195 | 17..211 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:28:26 Download gff for
BS15761.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nAcRbeta-64B-RB | 240..435 | 16..211 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:03:39 Download gff for
BS15761.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nAChRbeta1-RB | 240..435 | 16..211 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:03:39 Download gff for
BS15761.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4429651..4429846 | 16..211 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:28:26 Download gff for
BS15761.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4429651..4429846 | 16..211 | 100 | | Plus |
BS15761.3prime Sequence
225 bp (225 high quality bases) assembled on 2006-12-21
> BS15761.3prime
ATGGTCTAGAAAGCTTCTAAGAAACGGTTAGCAGAGTTAACAGAGTTTTT
AGGCCTTCATTTGCATTTCTTTCCTTTACGATTACATAACGGCCCTTGCC
CGAAAGGGGGCGTGGCAGTCTTCTTCTTCGTAGCCCAAAATACGTACCCA
ACGAAAAGGCCACAAGCACCAGGATGCTGCACAACAGCCAGGATTTGCAG
GAAGACTCCATGTCGACTGATAACT
BS15761.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11348-PB | 195 | nAcRbeta-64B-RB | 1..195 | 211..17 | 975 | 100 | Minus |
CG11348-PA | 1566 | nAcRbeta-64B-RA | 1..64 | 211..148 | 320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:56:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nAChRbeta1-RB | 818 | CG11348-RB | 240..435 | 212..17 | 980 | 100 | Minus |
nAChRbeta1-RA | 2460 | CG11348-RA | 240..304 | 212..148 | 325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:56:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4429651..4429846 | 212..17 | 980 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 13:56:19 has no hits.
BS15761.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:36:37 Download gff for
BS15761.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11348-PB | 1..195 | 17..211 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:16:18 Download gff for
BS15761.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11348-PB | 1..195 | 17..211 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:12:26 Download gff for
BS15761.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nAcRbeta-64B-RB | 240..435 | 17..212 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:50:03 Download gff for
BS15761.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nAChRbeta1-RB | 240..435 | 17..212 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:50:03 Download gff for
BS15761.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4429651..4429846 | 17..212 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:12:26 Download gff for
BS15761.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4429651..4429846 | 17..212 | 100 | | Minus |
BS15761.complete Sequence
227 bp assembled on 2006-11-29
GenBank Submission: FJ637961
> BS15761.complete
GAAGTTATCAGTCGACATGGAGTCTTCCTGCAAATCCTGGCTGTTGTGCA
GCATCCTGGTGCTTGTGGCCTTTTCGTTGGGTACGTATTTTGGGCTACGA
AGAAGAAGACTGCCACGCCCCCTTTCGGGCAAGGGCCGTTATGTAATCGT
AAAGGAAAGAAATGCAAATGAAGGCCTAAAAACTCTGTTAACTCTGCTAA
CCGTTTCTTAGAAGCTTTCTAGACCAT
BS15761.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:45:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nAChRbeta1-RB | 195 | CG11348-PB | 1..195 | 17..211 | 975 | 100 | Plus |
nAChRbeta1-RA | 1566 | CG11348-PA | 1..64 | 17..80 | 320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:45:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nAChRbeta1-RB | 818 | CG11348-RB | 240..435 | 16..211 | 980 | 100 | Plus |
nAChRbeta1-RA | 2460 | CG11348-RA | 240..304 | 16..80 | 325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:45:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4429651..4429846 | 16..211 | 980 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:45:45 has no hits.
BS15761.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:45:55 Download gff for
BS15761.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nAcRbeta-64B-RB | 1..195 | 17..211 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:12:36 Download gff for
BS15761.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nAcRbeta-64B-RB | 211..406 | 16..211 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:22:08 Download gff for
BS15761.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nAcRbeta-64B-RB | 241..435 | 17..211 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:45:55 Download gff for
BS15761.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nAcRbeta-64B-RB | 211..406 | 16..211 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:30 Download gff for
BS15761.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nAChRbeta1-RB | 241..435 | 17..211 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:30 Download gff for
BS15761.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4429652..4429846 | 17..211 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:22:08 Download gff for
BS15761.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4429652..4429846 | 17..211 | 100 | | Plus |
BS15761.pep Sequence
Translation from 16 to 210
> BS15761.pep
MESSCKSWLLCSILVLVAFSLGTYFGLRRRRLPRPLSGKGRYVIVKERNA
NEGLKTLLTLLTVS*
BS15761.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nAChRbeta1-PB | 64 | CG11348-PB | 1..64 | 1..64 | 322 | 100 | Plus |