Clone BS15761 Report

Search the DGRC for BS15761

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:157
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptnAChRbeta1-RB
Protein status:BS15761.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15761.5prime Sequence

225 bp (225 high quality bases) assembled on 2006-12-21

> BS15761.5prime
GAAGTTATCAGTCGACATGGAGTCTTCCTGCAAATCCTGGCTGTTGTGCA
GCATCCTGGTGCTTGTGGCCTTTTCGTTGGGTACGTATTTTGGGCTACGA
AGAAGAAGACTGCCACGCCCCCTTTCGGGCAAGGGCCGTTATGTAATCGT
AAAGGAAAGAAATGCAAATGAAGGCCTAAAAACTCTGTTAACTCTGCTAA
CCGTTTCTTAGAAGCTTTCTAGACC

BS15761.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11348-PB 195 nAcRbeta-64B-RB 1..195 17..211 975 100 Plus
CG11348-PA 1566 nAcRbeta-64B-RA 1..64 17..80 320 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 02:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
nAChRbeta1-RB 818 CG11348-RB 240..435 16..211 980 100 Plus
nAChRbeta1-RA 2460 CG11348-RA 240..304 16..80 325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 02:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4429651..4429846 16..211 980 100 Plus
Blast to na_te.dros performed on 2015-01-30 02:37:45 has no hits.

BS15761.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:36:39 Download gff for BS15761.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11348-PB 1..195 17..211 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:16:19 Download gff for BS15761.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11348-PB 1..195 17..211 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:28:26 Download gff for BS15761.5prime
Subject Subject Range Query Range Percent Splice Strand
nAcRbeta-64B-RB 240..435 16..211 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:03:39 Download gff for BS15761.5prime
Subject Subject Range Query Range Percent Splice Strand
nAChRbeta1-RB 240..435 16..211 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:03:39 Download gff for BS15761.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4429651..4429846 16..211 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:28:26 Download gff for BS15761.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4429651..4429846 16..211 100   Plus

BS15761.3prime Sequence

225 bp (225 high quality bases) assembled on 2006-12-21

> BS15761.3prime
ATGGTCTAGAAAGCTTCTAAGAAACGGTTAGCAGAGTTAACAGAGTTTTT
AGGCCTTCATTTGCATTTCTTTCCTTTACGATTACATAACGGCCCTTGCC
CGAAAGGGGGCGTGGCAGTCTTCTTCTTCGTAGCCCAAAATACGTACCCA
ACGAAAAGGCCACAAGCACCAGGATGCTGCACAACAGCCAGGATTTGCAG
GAAGACTCCATGTCGACTGATAACT

BS15761.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG11348-PB 195 nAcRbeta-64B-RB 1..195 211..17 975 100 Minus
CG11348-PA 1566 nAcRbeta-64B-RA 1..64 211..148 320 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
nAChRbeta1-RB 818 CG11348-RB 240..435 212..17 980 100 Minus
nAChRbeta1-RA 2460 CG11348-RA 240..304 212..148 325 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:56:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4429651..4429846 212..17 980 100 Minus
Blast to na_te.dros performed on 2015-02-02 13:56:19 has no hits.

BS15761.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:36:37 Download gff for BS15761.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11348-PB 1..195 17..211 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:16:18 Download gff for BS15761.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11348-PB 1..195 17..211 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:12:26 Download gff for BS15761.3prime
Subject Subject Range Query Range Percent Splice Strand
nAcRbeta-64B-RB 240..435 17..212 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:50:03 Download gff for BS15761.3prime
Subject Subject Range Query Range Percent Splice Strand
nAChRbeta1-RB 240..435 17..212 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:50:03 Download gff for BS15761.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4429651..4429846 17..212 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:12:26 Download gff for BS15761.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4429651..4429846 17..212 100   Minus

BS15761.complete Sequence

227 bp assembled on 2006-11-29

GenBank Submission: FJ637961

> BS15761.complete
GAAGTTATCAGTCGACATGGAGTCTTCCTGCAAATCCTGGCTGTTGTGCA
GCATCCTGGTGCTTGTGGCCTTTTCGTTGGGTACGTATTTTGGGCTACGA
AGAAGAAGACTGCCACGCCCCCTTTCGGGCAAGGGCCGTTATGTAATCGT
AAAGGAAAGAAATGCAAATGAAGGCCTAAAAACTCTGTTAACTCTGCTAA
CCGTTTCTTAGAAGCTTTCTAGACCAT

BS15761.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
nAChRbeta1-RB 195 CG11348-PB 1..195 17..211 975 100 Plus
nAChRbeta1-RA 1566 CG11348-PA 1..64 17..80 320 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:45:48
Subject Length Description Subject Range Query Range Score Percent Strand
nAChRbeta1-RB 818 CG11348-RB 240..435 16..211 980 100 Plus
nAChRbeta1-RA 2460 CG11348-RA 240..304 16..80 325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:45:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4429651..4429846 16..211 980 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:45:45 has no hits.

BS15761.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:45:55 Download gff for BS15761.complete
Subject Subject Range Query Range Percent Splice Strand
nAcRbeta-64B-RB 1..195 17..211 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:12:36 Download gff for BS15761.complete
Subject Subject Range Query Range Percent Splice Strand
nAcRbeta-64B-RB 211..406 16..211 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:22:08 Download gff for BS15761.complete
Subject Subject Range Query Range Percent Splice Strand
nAcRbeta-64B-RB 241..435 17..211 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:45:55 Download gff for BS15761.complete
Subject Subject Range Query Range Percent Splice Strand
nAcRbeta-64B-RB 211..406 16..211 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:30 Download gff for BS15761.complete
Subject Subject Range Query Range Percent Splice Strand
nAChRbeta1-RB 241..435 17..211 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:30 Download gff for BS15761.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4429652..4429846 17..211 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:22:08 Download gff for BS15761.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4429652..4429846 17..211 100   Plus

BS15761.pep Sequence

Translation from 16 to 210

> BS15761.pep
MESSCKSWLLCSILVLVAFSLGTYFGLRRRRLPRPLSGKGRYVIVKERNA
NEGLKTLLTLLTVS*

BS15761.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
nAChRbeta1-PB 64 CG11348-PB 1..64 1..64 322 100 Plus