Clone BS15768 Report

Search the DGRC for BS15768

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:157
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCyt-c-d-RA
Protein status:BS15768.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15768.3prime Sequence

348 bp (348 high quality bases) assembled on 2006-12-21

> BS15768.3prime
ATGGTCTAGAAAGCTTCTACTTGTTTGACTTGAGGAAGGCAATCAAATCG
GCCCGCTCCTCAGCCTTTTTAAGACCTGCGAACACCATCTTTGTTCCGGG
AATGTATTTCTTCGGGTCCTTGAGGTACTCGTCCAAATTCCCCTCTGTCC
AGGTAACGCCCTTCTTTATATTGGCATCGGTATACTTGTATCCCGCTGCT
GTGCCACACTTGCGACCCACGACCCCGCCAAGATTTGGGCCCACCTTGTG
TTTGCCGCCCACTTCGTAGGTGTGGCACTGGGCGCACTTCTGCACAAATA
TCTTCTTGCCGTTCTCTGCATCACCAGAACCCATGTCGACTGATAACT

BS15768.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG13263-PA 318 Cyt-c-d-RA 1..318 334..17 1590 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-c-d-RB 767 CG13263-RB 267..586 334..15 1600 100 Minus
Cyt-c-d-RA 837 CG13263-RA 337..656 334..15 1600 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16719135..16719454 334..15 1600 100 Minus
Blast to na_te.dros performed on 2015-01-30 16:42:05 has no hits.

BS15768.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:36:54 Download gff for BS15768.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13263-PA 1..318 17..334 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:16:37 Download gff for BS15768.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13263-PA 1..318 17..334 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 15:52:23 Download gff for BS15768.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyt-c-d-RA 337..662 8..334 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:09:30 Download gff for BS15768.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyt-c-d-RA 337..662 8..334 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:09:30 Download gff for BS15768.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16719135..16719460 8..334 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 15:52:23 Download gff for BS15768.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16719135..16719460 8..334 98   Minus

BS15768.5prime Sequence

348 bp (348 high quality bases) assembled on 2006-12-21

> BS15768.5prime
GAAGTTATCAGTCGACATGGGTTCTGGTGATGCAGAGAACGGCAAGAAGA
TATTTGTGCAGAAGTGCGCCCAGTGCCACACCTACGAAGTGGGCGGCAAA
CACAAGGTGGGCCCAAATCTTGGCGGGGTCGTGGGTCGCAAGTGTGGCAC
AGCAGCGGGATACAAGTATACCGATGCCAATATAAAGAAGGGCGTTACCT
GGACAGAGGGGAATTTGGACGAGTACCTCAAGGACCCGAAGAAATACATT
CCCGGAACAAAGATGGTGTTCGCAGGTCTTAAAAAGGCTGAGGAGCGGGC
CGATTTGATTGCCTTCCTCAAGTCAAACAAGTAGAAGCTTTCTAGACC

BS15768.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG13263-PA 318 Cyt-c-d-RA 1..318 17..334 1590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-c-d-RB 767 CG13263-RB 267..586 17..336 1600 100 Plus
Cyt-c-d-RA 837 CG13263-RA 337..656 17..336 1600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16719135..16719454 17..336 1600 100 Plus
Blast to na_te.dros performed on 2015-02-02 13:54:24 has no hits.

BS15768.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:36:55 Download gff for BS15768.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13263-PA 1..318 17..334 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:16:38 Download gff for BS15768.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13263-PA 1..318 17..334 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:12:00 Download gff for BS15768.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyt-c-d-RA 337..662 17..343 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:49:46 Download gff for BS15768.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyt-c-d-RA 337..662 17..343 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:49:46 Download gff for BS15768.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16719135..16719460 17..343 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:12:00 Download gff for BS15768.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16719135..16719460 17..343 98   Plus

BS15768.complete Sequence

350 bp assembled on 2006-11-29

GenBank Submission: FJ638870

> BS15768.complete
GAAGTTATCAGTCGACATGGGTTCTGGTGATGCAGAGAACGGCAAGAAGA
TATTTGTGCAGAAGTGCGCCCAGTGCCACACCTACGAAGTGGGCGGCAAA
CACAAGGTGGGCCCAAATCTTGGCGGGGTCGTGGGTCGCAAGTGTGGCAC
AGCAGCGGGATACAAGTATACCGATGCCAATATAAAGAAGGGCGTTACCT
GGACAGAGGGGAATTTGGACGAGTACCTCAAGGACCCGAAGAAATACATT
CCCGGAACAAAGATGGTGTTCGCAGGTCTTAAAAAGGCTGAGGAGCGGGC
CGATTTGATTGCCTTCCTCAAGTCAAACAAGTAGAAGCTTTCTAGACCAT

BS15768.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-c-d-RB 318 CG13263-PB 1..318 17..334 1590 100 Plus
Cyt-c-d-RA 318 CG13263-PA 1..318 17..334 1590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-c-d-RB 767 CG13263-RB 267..586 17..336 1600 100 Plus
Cyt-c-d-RA 837 CG13263-RA 337..656 17..336 1600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16719135..16719454 17..336 1600 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:27:01 has no hits.

BS15768.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:31 Download gff for BS15768.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-c-d-RA 1..318 17..334 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:14:47 Download gff for BS15768.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-c-d-RA 370..695 17..343 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:58:30 Download gff for BS15768.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-c-d-RA 337..654 17..334 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:31 Download gff for BS15768.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-c-d-RA 370..695 17..343 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:01:26 Download gff for BS15768.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-c-d-RA 337..654 17..334 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:01:26 Download gff for BS15768.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16719135..16719452 17..334 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:58:30 Download gff for BS15768.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16719135..16719452 17..334 100   Plus

BS15768.pep Sequence

Translation from 16 to 333

> BS15768.pep
MGSGDAENGKKIFVQKCAQCHTYEVGGKHKVGPNLGGVVGRKCGTAAGYK
YTDANIKKGVTWTEGNLDEYLKDPKKYIPGTKMVFAGLKKAEERADLIAF
LKSNK*

BS15768.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-c-d-PB 105 CG13263-PB 1..105 1..105 565 100 Plus
Cyt-c-d-PA 105 CG13263-PA 1..105 1..105 565 100 Plus
Cyt-c-p-PB 108 CG17903-PB 5..105 3..103 407 72.3 Plus
Cyt-c-p-PA 108 CG17903-PA 5..105 3..103 407 72.3 Plus