Clone BS15774 Report

Search the DGRC for BS15774

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:157
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptSyx8-RA
Protein status:BS15774.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15774.3prime Sequence

729 bp (729 high quality bases) assembled on 2006-12-21

> BS15774.3prime
ATGGTCTAGAAAGCTTCTACATGAAGACCACGACAATGATGGCGACGAAC
AAGGCTATGATGACGAGCCAGTAGCCCCAGGTACTGTCCCGCCGGTTAAC
CTGTCCAATGCTCTGTGTTTCCCGCTGCACACCCGTTTCCACACGGTCCA
TGGCATTGGCCAAGTTGTCAAGGATATTGTTCTGGTCCTCCACCTCGTTG
CCCAGCTGTGTGGCCAGTTGGCGCTGTCTGGACAATGTGGCTGATAGAAC
CTCGAGTCCTTCGTTCTGCTGCGCCAGCATCTCGGTCTTTTTCTGCTTCA
GAGCCTCCACATCCAAGGCGGTATTCCGCGAGGAATTGCTGTGACCTGGG
CCGAGATCCTGATCCTGCCAAGCAGAACCGGATGCGGCCGGGACATTGGA
GCGGCTACTGTTTGCGAACTTCTCGCGGATCTCGCGCAGCTGCGAAGTAA
GTCTATCCCAGTCGATGCGCCGCTGTTGCAGCTCCTCCTCCGGGCTCGTC
TCCCAGGTGATGGCGTTGTCCAGCACCACCTTGAGGTGCTTCATGTCCTT
GGCCAGCTGCTCTATTCCCGTCTGAATGCTGCTTGTCAGTTGGACGAACT
GGCTCGTCCTCGGATTGAGCTGCTGCCGCTGGTTGAGGTATACCAGCAGC
TGATGCCGCAGTCGCTCGCAGCCCTCGTACTCGATGTCCCAGGAATCGTG
ATCCACCAGCGCCATGTCGACTGATAACT

BS15774.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4109-PA 699 Syx8-RA 1..693 715..23 3465 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 12:27:17
Subject Length Description Subject Range Query Range Score Percent Strand
Syx8-RA 897 CG4109-RA 80..772 715..23 3465 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 12:27:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16586441..16586978 178..715 2690 100 Plus
3L 28110227 3L 16586233..16586387 23..177 775 100 Plus
Blast to na_te.dros performed 2015-01-30 12:27:15
Subject Length Description Subject Range Query Range Score Percent Strand
BS4 754 BS4 BS4 754bp 91..126 545..583 107 79.5 Plus

BS15774.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:37:06 Download gff for BS15774.3prime
Subject Subject Range Query Range Percent Splice Strand
Syx8-PA 1..699 17..715 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:16:51 Download gff for BS15774.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4109-PA 1..699 17..715 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:36:45 Download gff for BS15774.3prime
Subject Subject Range Query Range Percent Splice Strand
Syx8-RA 73..780 12..723 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:01:17 Download gff for BS15774.3prime
Subject Subject Range Query Range Percent Splice Strand
Syx8-RA 73..780 12..723 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 14:01:17 Download gff for BS15774.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16586225..16586387 12..177 96 <- Plus
3L 16586441..16586985 178..723 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:36:45 Download gff for BS15774.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16579325..16579487 12..177 96 <- Plus
arm_3L 16579541..16580085 178..723 99   Plus

BS15774.5prime Sequence

729 bp (729 high quality bases) assembled on 2006-12-21

> BS15774.5prime
GAAGTTATCAGTCGACATGGCGCTGGTGGATCACGATTCCTGGGACATCG
AGTACGAGGGCTGCGAGCGACTGCGGCATCAGCTGCTGGTATACCTCAAC
CAGCGGCAGCAGCTCAATCCGAGGACGAGCCAGTTCGTCCAACTGACAAG
CAGCATTCAGACGGGAATAGAGCAGCTGGCCAAGGACATGAAGCACCTCA
AGGTGGTGCTGGACAACGCCATCACCTGGGAGACGAGCCCGGAGGAGGAG
CTGCAACAGCGGCGCATCGACTGGGATAGACTTACTTCGCAGCTGCGCGA
GATCCGCGAGAAGTTCGCAAACAGTAGCCGCTCCAATGTCCCGGCCGCAT
CCGGTTCTGCTTGGCAGGATCAGGATCTCGGCCCAGGTCACAGCAATTCC
TCGCGGAATACCGCCTTGGATGTGGAGGCTCTGAAGCAGAAAAAGACCGA
GATGCTGGCGCAGCAGAACGAAGGACTCGAGGTTCTATCAGCCACATTGT
CCAGACAGCGCCAACTGGCCACACAGCTGGGCAACGAGGTGGAGGACCAG
AACAATATCCTTGACAACTTGGCCAATGCCATGGACCGTGTGGAAACGGG
TGTGCAGCGGGAAACACAGAGCATTGGACAGGTTAACCGGCGGGACAGTA
CCTGGGGCTACTGGCTCGTCATCATAGCCTTGTTCGTCGCCATCATTGTC
GTGGTCTTCGTCTAGAAGCTTTCTAGACC

BS15774.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4109-PA 699 Syx8-RA 1..699 17..715 3495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
Syx8-RA 897 CG4109-RA 80..778 17..715 3495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:44:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16586441..16586978 554..17 2690 100 Minus
3L 28110227 3L 16586227..16586387 715..555 805 100 Minus
Blast to na_te.dros performed 2015-02-11 15:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
BS4 754 BS4 BS4 754bp 91..126 187..149 107 79.5 Minus

BS15774.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:37:07 Download gff for BS15774.5prime
Subject Subject Range Query Range Percent Splice Strand
Syx8-PA 1..699 17..715 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:16:53 Download gff for BS15774.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4109-PA 1..699 17..715 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 03:47:13 Download gff for BS15774.5prime
Subject Subject Range Query Range Percent Splice Strand
Syx8-RA 73..780 9..720 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:29:49 Download gff for BS15774.5prime
Subject Subject Range Query Range Percent Splice Strand
Syx8-RA 73..780 9..720 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:29:49 Download gff for BS15774.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16586225..16586387 555..720 98 <- Minus
3L 16586441..16586985 9..554 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 03:47:13 Download gff for BS15774.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16579325..16579487 555..720 98 <- Minus
arm_3L 16579541..16580085 9..554 99   Minus

BS15774.complete Sequence

731 bp assembled on 2006-11-29

GenBank Submission: FJ637962

> BS15774.complete
GAAGTTATCAGTCGACATGGCGCTGGTGGATCACGATTCCTGGGACATCG
AGTACGAGGGCTGCGAGCGACTGCGGCATCAGCTGCTGGTATACCTCAAC
CAGCGGCAGCAGCTCAATCCGAGGACGAGCCAGTTCGTCCAACTGACAAG
CAGCATTCAGACGGGAATAGAGCAGCTGGCCAAGGACATGAAGCACCTCA
AGGTGGTGCTGGACAACGCCATCACCTGGGAGACGAGCCCGGAGGAGGAG
CTGCAACAGCGGCGCATCGACTGGGATAGACTTACTTCGCAGCTGCGCGA
GATCCGCGAGAAGTTCGCAAACAGTAGCCGCTCCAATGTCCCGGCCGCAT
CCGGTTCTGCTTGGCAGGATCAGGATCTCGGCCCAGGTCACAGCAATTCC
TCGCGGAATACCGCCTTGGATGTGGAGGCTCTGAAGCAGAAAAAGACCGA
GATGCTGGCGCAGCAGAACGAAGGACTCGAGGTTCTATCAGCCACATTGT
CCAGACAGCGCCAACTGGCCACACAGCTGGGCAACGAGGTGGAGGACCAG
AACAATATCCTTGACAACTTGGCCAATGCCATGGACCGTGTGGAAACGGG
TGTGCAGCGGGAAACACAGAGCATTGGACAGGTTAACCGGCGGGACAGTA
CCTGGGGCTACTGGCTCGTCATCATAGCCTTGTTCGTCGCCATCATTGTC
GTGGTCTTCGTCTAGAAGCTTTCTAGACCAT

BS15774.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
Syx8-RA 699 CG4109-PA 1..699 17..715 3495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
Syx8-RA 897 CG4109-RA 80..778 17..715 3495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:17:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16586441..16586978 554..17 2690 100 Minus
3L 28110227 3L 16586227..16586387 715..555 805 100 Minus
Blast to na_te.dros performed 2014-11-28 00:18:00
Subject Length Description Subject Range Query Range Score Percent Strand
BS4 754 BS4 BS4 754bp 91..126 187..149 107 79.5 Minus

BS15774.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:11 Download gff for BS15774.complete
Subject Subject Range Query Range Percent Splice Strand
Syx8-RA 1..699 17..715 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:09 Download gff for BS15774.complete
Subject Subject Range Query Range Percent Splice Strand
Syx8-RA 115..820 9..715 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:31 Download gff for BS15774.complete
Subject Subject Range Query Range Percent Splice Strand
Syx8-RA 80..778 17..715 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:12 Download gff for BS15774.complete
Subject Subject Range Query Range Percent Splice Strand
Syx8-RA 115..820 9..715 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:59 Download gff for BS15774.complete
Subject Subject Range Query Range Percent Splice Strand
Syx8-RA 80..778 17..715 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:59 Download gff for BS15774.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16586441..16586978 17..554 100   Minus
3L 16586227..16586387 555..715 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:31 Download gff for BS15774.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16579327..16579487 555..715 100 <- Minus
arm_3L 16579541..16580078 17..554 100   Minus

BS15774.pep Sequence

Translation from 16 to 714

> BS15774.pep
MALVDHDSWDIEYEGCERLRHQLLVYLNQRQQLNPRTSQFVQLTSSIQTG
IEQLAKDMKHLKVVLDNAITWETSPEEELQQRRIDWDRLTSQLREIREKF
ANSSRSNVPAASGSAWQDQDLGPGHSNSSRNTALDVEALKQKKTEMLAQQ
NEGLEVLSATLSRQRQLATQLGNEVEDQNNILDNLANAMDRVETGVQRET
QSIGQVNRRDSTWGYWLVIIALFVAIIVVVFV*

BS15774.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
Syx8-PA 232 CG4109-PA 1..232 1..232 1178 100 Plus