Clone Sequence Records
BS15774.3prime Sequence
729 bp (729 high quality bases) assembled on 2006-12-21
> BS15774.3prime
ATGGTCTAGAAAGCTTCTACATGAAGACCACGACAATGATGGCGACGAAC
AAGGCTATGATGACGAGCCAGTAGCCCCAGGTACTGTCCCGCCGGTTAAC
CTGTCCAATGCTCTGTGTTTCCCGCTGCACACCCGTTTCCACACGGTCCA
TGGCATTGGCCAAGTTGTCAAGGATATTGTTCTGGTCCTCCACCTCGTTG
CCCAGCTGTGTGGCCAGTTGGCGCTGTCTGGACAATGTGGCTGATAGAAC
CTCGAGTCCTTCGTTCTGCTGCGCCAGCATCTCGGTCTTTTTCTGCTTCA
GAGCCTCCACATCCAAGGCGGTATTCCGCGAGGAATTGCTGTGACCTGGG
CCGAGATCCTGATCCTGCCAAGCAGAACCGGATGCGGCCGGGACATTGGA
GCGGCTACTGTTTGCGAACTTCTCGCGGATCTCGCGCAGCTGCGAAGTAA
GTCTATCCCAGTCGATGCGCCGCTGTTGCAGCTCCTCCTCCGGGCTCGTC
TCCCAGGTGATGGCGTTGTCCAGCACCACCTTGAGGTGCTTCATGTCCTT
GGCCAGCTGCTCTATTCCCGTCTGAATGCTGCTTGTCAGTTGGACGAACT
GGCTCGTCCTCGGATTGAGCTGCTGCCGCTGGTTGAGGTATACCAGCAGC
TGATGCCGCAGTCGCTCGCAGCCCTCGTACTCGATGTCCCAGGAATCGTG
ATCCACCAGCGCCATGTCGACTGATAACT
BS15774.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4109-PA | 699 | Syx8-RA | 1..693 | 715..23 | 3465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 12:27:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx8-RA | 897 | CG4109-RA | 80..772 | 715..23 | 3465 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 12:27:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16586441..16586978 | 178..715 | 2690 | 100 | Plus |
3L | 28110227 | 3L | 16586233..16586387 | 23..177 | 775 | 100 | Plus |
Blast to na_te.dros performed 2015-01-30 12:27:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BS4 | 754 | BS4 BS4 754bp | 91..126 | 545..583 | 107 | 79.5 | Plus |
BS15774.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:37:06 Download gff for
BS15774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx8-PA | 1..699 | 17..715 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:16:51 Download gff for
BS15774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4109-PA | 1..699 | 17..715 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:36:45 Download gff for
BS15774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx8-RA | 73..780 | 12..723 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:01:17 Download gff for
BS15774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx8-RA | 73..780 | 12..723 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 14:01:17 Download gff for
BS15774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16586225..16586387 | 12..177 | 96 | <- | Plus |
3L | 16586441..16586985 | 178..723 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:36:45 Download gff for
BS15774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16579325..16579487 | 12..177 | 96 | <- | Plus |
arm_3L | 16579541..16580085 | 178..723 | 99 | | Plus |
BS15774.5prime Sequence
729 bp (729 high quality bases) assembled on 2006-12-21
> BS15774.5prime
GAAGTTATCAGTCGACATGGCGCTGGTGGATCACGATTCCTGGGACATCG
AGTACGAGGGCTGCGAGCGACTGCGGCATCAGCTGCTGGTATACCTCAAC
CAGCGGCAGCAGCTCAATCCGAGGACGAGCCAGTTCGTCCAACTGACAAG
CAGCATTCAGACGGGAATAGAGCAGCTGGCCAAGGACATGAAGCACCTCA
AGGTGGTGCTGGACAACGCCATCACCTGGGAGACGAGCCCGGAGGAGGAG
CTGCAACAGCGGCGCATCGACTGGGATAGACTTACTTCGCAGCTGCGCGA
GATCCGCGAGAAGTTCGCAAACAGTAGCCGCTCCAATGTCCCGGCCGCAT
CCGGTTCTGCTTGGCAGGATCAGGATCTCGGCCCAGGTCACAGCAATTCC
TCGCGGAATACCGCCTTGGATGTGGAGGCTCTGAAGCAGAAAAAGACCGA
GATGCTGGCGCAGCAGAACGAAGGACTCGAGGTTCTATCAGCCACATTGT
CCAGACAGCGCCAACTGGCCACACAGCTGGGCAACGAGGTGGAGGACCAG
AACAATATCCTTGACAACTTGGCCAATGCCATGGACCGTGTGGAAACGGG
TGTGCAGCGGGAAACACAGAGCATTGGACAGGTTAACCGGCGGGACAGTA
CCTGGGGCTACTGGCTCGTCATCATAGCCTTGTTCGTCGCCATCATTGTC
GTGGTCTTCGTCTAGAAGCTTTCTAGACC
BS15774.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4109-PA | 699 | Syx8-RA | 1..699 | 17..715 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:44:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx8-RA | 897 | CG4109-RA | 80..778 | 17..715 | 3495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:44:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16586441..16586978 | 554..17 | 2690 | 100 | Minus |
3L | 28110227 | 3L | 16586227..16586387 | 715..555 | 805 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 15:44:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BS4 | 754 | BS4 BS4 754bp | 91..126 | 187..149 | 107 | 79.5 | Minus |
BS15774.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:37:07 Download gff for
BS15774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx8-PA | 1..699 | 17..715 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:16:53 Download gff for
BS15774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4109-PA | 1..699 | 17..715 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 03:47:13 Download gff for
BS15774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx8-RA | 73..780 | 9..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:29:49 Download gff for
BS15774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx8-RA | 73..780 | 9..720 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:29:49 Download gff for
BS15774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16586225..16586387 | 555..720 | 98 | <- | Minus |
3L | 16586441..16586985 | 9..554 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 03:47:13 Download gff for
BS15774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16579325..16579487 | 555..720 | 98 | <- | Minus |
arm_3L | 16579541..16580085 | 9..554 | 99 | | Minus |
BS15774.complete Sequence
731 bp assembled on 2006-11-29
GenBank Submission: FJ637962
> BS15774.complete
GAAGTTATCAGTCGACATGGCGCTGGTGGATCACGATTCCTGGGACATCG
AGTACGAGGGCTGCGAGCGACTGCGGCATCAGCTGCTGGTATACCTCAAC
CAGCGGCAGCAGCTCAATCCGAGGACGAGCCAGTTCGTCCAACTGACAAG
CAGCATTCAGACGGGAATAGAGCAGCTGGCCAAGGACATGAAGCACCTCA
AGGTGGTGCTGGACAACGCCATCACCTGGGAGACGAGCCCGGAGGAGGAG
CTGCAACAGCGGCGCATCGACTGGGATAGACTTACTTCGCAGCTGCGCGA
GATCCGCGAGAAGTTCGCAAACAGTAGCCGCTCCAATGTCCCGGCCGCAT
CCGGTTCTGCTTGGCAGGATCAGGATCTCGGCCCAGGTCACAGCAATTCC
TCGCGGAATACCGCCTTGGATGTGGAGGCTCTGAAGCAGAAAAAGACCGA
GATGCTGGCGCAGCAGAACGAAGGACTCGAGGTTCTATCAGCCACATTGT
CCAGACAGCGCCAACTGGCCACACAGCTGGGCAACGAGGTGGAGGACCAG
AACAATATCCTTGACAACTTGGCCAATGCCATGGACCGTGTGGAAACGGG
TGTGCAGCGGGAAACACAGAGCATTGGACAGGTTAACCGGCGGGACAGTA
CCTGGGGCTACTGGCTCGTCATCATAGCCTTGTTCGTCGCCATCATTGTC
GTGGTCTTCGTCTAGAAGCTTTCTAGACCAT
BS15774.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:18:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx8-RA | 699 | CG4109-PA | 1..699 | 17..715 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:18:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx8-RA | 897 | CG4109-RA | 80..778 | 17..715 | 3495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:17:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16586441..16586978 | 554..17 | 2690 | 100 | Minus |
3L | 28110227 | 3L | 16586227..16586387 | 715..555 | 805 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:18:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BS4 | 754 | BS4 BS4 754bp | 91..126 | 187..149 | 107 | 79.5 | Minus |
BS15774.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:11 Download gff for
BS15774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx8-RA | 1..699 | 17..715 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:09 Download gff for
BS15774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx8-RA | 115..820 | 9..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:31 Download gff for
BS15774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx8-RA | 80..778 | 17..715 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:12 Download gff for
BS15774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx8-RA | 115..820 | 9..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:59 Download gff for
BS15774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx8-RA | 80..778 | 17..715 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:59 Download gff for
BS15774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16586441..16586978 | 17..554 | 100 | | Minus |
3L | 16586227..16586387 | 555..715 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:31 Download gff for
BS15774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16579327..16579487 | 555..715 | 100 | <- | Minus |
arm_3L | 16579541..16580078 | 17..554 | 100 | | Minus |
BS15774.pep Sequence
Translation from 16 to 714
> BS15774.pep
MALVDHDSWDIEYEGCERLRHQLLVYLNQRQQLNPRTSQFVQLTSSIQTG
IEQLAKDMKHLKVVLDNAITWETSPEEELQQRRIDWDRLTSQLREIREKF
ANSSRSNVPAASGSAWQDQDLGPGHSNSSRNTALDVEALKQKKTEMLAQQ
NEGLEVLSATLSRQRQLATQLGNEVEDQNNILDNLANAMDRVETGVQRET
QSIGQVNRRDSTWGYWLVIIALFVAIIVVVFV*
BS15774.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx8-PA | 232 | CG4109-PA | 1..232 | 1..232 | 1178 | 100 | Plus |