Clone Sequence Records
BS15775.5prime Sequence
813 bp (748 high quality bases) assembled on 2006-12-21
> BS15775.5prime
GAAGTTATCAGTCGACATGCTGGACAAGGTTAAAAATGTTATCGTAGTGC
TATCAGGCAAGGGCGGAGTAGGAAAATCCACAGTGAGCACCCAATTATCG
CTGGCACTGCGAAAAAACGGATTTAAGGTTGGTCTGCTCGATATAGATCT
GTGTGGACCGAGTGTGCCATATCTATTGGGTCTGGAAGGACGGGATATCT
TCCAGTGCGACGATGGATGGGTTCCTGTCTATACAGATGAATCCCAAACC
TTGGCGGTGATGTCCATTGGATTTTTATTGAAGAACCGTGAGGATCCGGT
CATTTGGCGTGGTCCCAAAAAGACCATGATGATCCGGCAGTTCCTCACCG
ACGTCAGGTGGGATGAGCTGGATTACCTAATTATCGATACGCCACCCGGC
ACTTCGGATGAGCACATCACCGTAATGGAGTGCCTGAAGGAGGTTGGTTG
CCACGGAGCCATAATTGTGACCACACCGCAGGAGGTGGCCCTGGACGATG
TACGCAAGGAGATCACCTTCTGCAAGAAGACCGGCATCAATATCCTGGGC
ATCGTCGAGAATATGAGTGGGTTCGTGTGCCCCCATTGCACCTCGTGCAC
CAATATATTCTCGTNCAACGGTGGCGTCTCACTGGCCACTTACGCCCAAG
TACCACATCTAGGAACTCTGCCCATAGATCCCCGTGTTGGCATTTTGGCG
GGCACCACTACGTCCGTCTTGGATGAGCTTCCGGATTCCACGACAGCGGA
GGTGCTGACGCATATAGTTGAGAAAGTGAAAACGATGTTGGTCTCCTAAA
AGCTTTCTAGACC
BS15775.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4858-PA | 783 | CG4858-RA | 1..783 | 17..799 | 3821 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:00:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4858-RA | 950 | CG4858-RA | 79..862 | 17..800 | 3864 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:00:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20526836..20527282 | 126..572 | 2235 | 100 | Plus |
3L | 28110227 | 3L | 20527592..20527822 | 570..800 | 1099 | 98.3 | Plus |
3L | 28110227 | 3L | 20526654..20526766 | 17..129 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:00:31 has no hits.
BS15775.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:37:10 Download gff for
BS15775.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4858-PA | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:16:55 Download gff for
BS15775.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4858-PA | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 23:31:42 Download gff for
BS15775.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4858-RA | 79..862 | 17..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:43:55 Download gff for
BS15775.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4858-RA | 79..862 | 17..800 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:43:55 Download gff for
BS15775.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20526654..20526764 | 17..127 | 100 | -> | Plus |
3L | 20526838..20527280 | 128..570 | 100 | -> | Plus |
3L | 20527593..20527822 | 571..800 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 23:31:42 Download gff for
BS15775.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20519754..20519864 | 17..127 | 100 | -> | Plus |
arm_3L | 20519938..20520380 | 128..570 | 100 | -> | Plus |
arm_3L | 20520693..20520922 | 571..800 | 98 | | Plus |
BS15775.3prime Sequence
813 bp (771 high quality bases) assembled on 2006-12-21
> BS15775.3prime
ATGGTCTAGAAAGCTTTTAGCATACCAACATCGTTTTCAACTTCTCAACT
ATATGCGTCAGCACCTCCGCTGTCGTGGAATCCGGAAGCTCATCCAAGAC
GGACGTAGTGGTGCCCGCCAAAATGCCAACACGGGGATCTATGGGCAGAG
TTCCTAGATGTGGTACTTGGGCGTAAGTGGCCAGTGAGACGCCACCGTTT
GACGAGAATATATTGGTGCACGAGGTGCAATGGGGGCACACGAACCCACT
CATATTCTCGACGATGCCCAGGATATTGATGCCGGTCTTCTTGCAGAAGG
TGATCTCCTTGCGTACATCGTCCAGGGCCACCTCCTGCGGTGTGGTCACA
ATTATGGCTCCGTGGCAACCAACCTCCTTCAGGCACTCCATTACGGTGAT
GTGCTCATCCGAAGTGCCGGGTGGCGTATCGATAATTAGGTAATCCAGCT
CATCCCACCTGACGTCGGTGAGGAACTGCCGGATCATCATGGTCTTTTTG
GGACCACGCCAAATGACCGGATCCTCACGGTTCTTCAATAAAAATCCAAT
GGACATCACCGCCAAGGTTTGGGATTCATCTGTATAGACAGGAACCCATC
CATCGTCGCACTGGAAGATATCCCGTCCTTCCAGACCCAATAGATATGGC
ACACTCGGTCCACACAGATCTATATCGAGCAGACCAACCTTAAATCCGTT
TTTTCGCAGTGCCAGCGATAATTGGGTGCTCACTGTGGATTTTCCTACTC
CGCCCTTGCCTGATAGCACTACGATAACATTTTTAACCTTGTCCAGCATG
TCGACTGATAACT
BS15775.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4858-PA | 783 | CG4858-RA | 1..776 | 799..24 | 3880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 03:24:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4858-RA | 950 | CG4858-RA | 79..862 | 799..16 | 3890 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 03:24:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20526836..20527282 | 690..244 | 2235 | 100 | Minus |
3L | 28110227 | 3L | 20527592..20527822 | 246..16 | 1125 | 99.1 | Minus |
3L | 28110227 | 3L | 20526654..20526766 | 799..687 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 03:24:41 has no hits.
BS15775.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:37:08 Download gff for
BS15775.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4858-PA | 1..783 | 17..799 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:16:54 Download gff for
BS15775.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4858-PA | 1..783 | 17..799 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:30:54 Download gff for
BS15775.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4858-RA | 79..862 | 16..799 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:10:56 Download gff for
BS15775.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4858-RA | 79..862 | 16..799 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:10:56 Download gff for
BS15775.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20526654..20526764 | 689..799 | 100 | -> | Minus |
3L | 20526838..20527280 | 246..688 | 100 | -> | Minus |
3L | 20527593..20527822 | 16..245 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:30:54 Download gff for
BS15775.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20519754..20519864 | 689..799 | 100 | -> | Minus |
arm_3L | 20519938..20520380 | 246..688 | 100 | -> | Minus |
arm_3L | 20520693..20520922 | 16..245 | 99 | | Minus |
BS15775.complete Sequence
815 bp assembled on 2006-11-29
GenBank Submission: FJ637963
> BS15775.complete
GAAGTTATCAGTCGACATGCTGGACAAGGTTAAAAATGTTATCGTAGTGC
TATCAGGCAAGGGCGGAGTAGGAAAATCCACAGTGAGCACCCAATTATCG
CTGGCACTGCGAAAAAACGGATTTAAGGTTGGTCTGCTCGATATAGATCT
GTGTGGACCGAGTGTGCCATATCTATTGGGTCTGGAAGGACGGGATATCT
TCCAGTGCGACGATGGATGGGTTCCTGTCTATACAGATGAATCCCAAACC
TTGGCGGTGATGTCCATTGGATTTTTATTGAAGAACCGTGAGGATCCGGT
CATTTGGCGTGGTCCCAAAAAGACCATGATGATCCGGCAGTTCCTCACCG
ACGTCAGGTGGGATGAGCTGGATTACCTAATTATCGATACGCCACCCGGC
ACTTCGGATGAGCACATCACCGTAATGGAGTGCCTGAAGGAGGTTGGTTG
CCACGGAGCCATAATTGTGACCACACCGCAGGAGGTGGCCCTGGACGATG
TACGCAAGGAGATCACCTTCTGCAAGAAGACCGGCATCAATATCCTGGGC
ATCGTCGAGAATATGAGTGGGTTCGTGTGCCCCCATTGCACCTCGTGCAC
CAATATATTCTCGTCAAACGGTGGCGTCTCACTGGCCACTTACGCCCAAG
TACCACATCTAGGAACTCTGCCCATAGATCCCCGTGTTGGCATTTTGGCG
GGCACCACTACGTCCGTCTTGGATGAGCTTCCGGATTCCACGACAGCGGA
GGTGCTGACGCATATAGTTGAGAAGTTGAAAACGATGTTGGTCTCCTAAA
AGCTTTCTAGACCAT
BS15775.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4858-RA | 783 | CG4858-PA | 1..783 | 17..799 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4858-RA | 950 | CG4858-RA | 79..862 | 17..800 | 3920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:55:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20526836..20527282 | 126..572 | 2235 | 100 | Plus |
3L | 28110227 | 3L | 20527592..20527822 | 570..800 | 1155 | 100 | Plus |
3L | 28110227 | 3L | 20526654..20526766 | 17..129 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:55:28 has no hits.
BS15775.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:23:59 Download gff for
BS15775.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4858-RA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:24 Download gff for
BS15775.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4858-RA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:44 Download gff for
BS15775.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4858-RA | 79..859 | 17..797 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:00 Download gff for
BS15775.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4858-RA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:53 Download gff for
BS15775.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4858-RA | 79..859 | 17..797 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:53 Download gff for
BS15775.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20526654..20526764 | 17..127 | 100 | -> | Plus |
3L | 20526838..20527280 | 128..570 | 100 | -> | Plus |
3L | 20527593..20527819 | 571..797 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:44 Download gff for
BS15775.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20519754..20519864 | 17..127 | 100 | -> | Plus |
arm_3L | 20519938..20520380 | 128..570 | 100 | -> | Plus |
arm_3L | 20520693..20520919 | 571..797 | 100 | | Plus |
BS15775.pep Sequence
Translation from 16 to 798
> BS15775.pep
MLDKVKNVIVVLSGKGGVGKSTVSTQLSLALRKNGFKVGLLDIDLCGPSV
PYLLGLEGRDIFQCDDGWVPVYTDESQTLAVMSIGFLLKNREDPVIWRGP
KKTMMIRQFLTDVRWDELDYLIIDTPPGTSDEHITVMECLKEVGCHGAII
VTTPQEVALDDVRKEITFCKKTGINILGIVENMSGFVCPHCTSCTNIFSS
NGGVSLATYAQVPHLGTLPIDPRVGILAGTTTSVLDELPDSTTAEVLTHI
VEKLKTMLVS*
BS15775.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4858-PA | 260 | CG4858-PA | 1..260 | 1..260 | 1355 | 100 | Plus |
CG17904-PA | 311 | CG17904-PA | 54..306 | 5..254 | 556 | 47.9 | Plus |
CG3262-PE | 293 | CG3262-PE | 38..279 | 5..258 | 361 | 34.3 | Plus |
CG3262-PD | 293 | CG3262-PD | 38..279 | 5..258 | 361 | 34.3 | Plus |
CG3262-PF | 207 | CG3262-PF | 19..193 | 75..258 | 224 | 31 | Plus |