Clone Sequence Records
BS15779.3prime Sequence
270 bp (270 high quality bases) assembled on 2006-12-21
> BS15779.3prime
ATGGTCTAGAAAGCTTCTACCTTTTCTTGCACTCATCTTTGGATTTGTCT
GAGCCGCCGGGTTTGTTTTTGCAACGTGGTGAAGTGGGAACAACCTTTCT
GCCACACATATCCTTCTTCTTTTTGTCTTTCTTCTTTTTGGAATCGGCAC
CCTTGCAAGAATCCTTGCCCGAATCCTTCGGCGATTTGGCCATTAGTCGT
GCGCCGAAAACGCCTTCACTCAATTTCATGAGCGCCAAGCTGCGCACTTT
GAACATGTCGACTGATAACT
BS15779.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32388-PA | 240 | CG32388-RA | 1..235 | 256..22 | 1125 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 21:29:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43439-RA | 990 | CG43439-RA | 84..324 | 257..17 | 1160 | 98.8 | Minus |
CG32388-RA | 990 | CG32388-RA | 84..324 | 257..17 | 1160 | 98.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 21:29:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6984343..6984503 | 97..257 | 805 | 100 | Plus |
3L | 28110227 | 3L | 6984200..6984277 | 17..94 | 375 | 98.7 | Plus |
Blast to na_te.dros performed 2015-02-05 21:29:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 1724..1786 | 123..61 | 108 | 63.5 | Minus |
BS15779.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:37:17 Download gff for
BS15779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32388-PA | 1..240 | 17..256 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:17:05 Download gff for
BS15779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32388-PA | 1..240 | 17..256 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 03:20:47 Download gff for
BS15779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32388-RA | 68..332 | 9..270 | 95 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:22:34 Download gff for
BS15779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32388-RA | 68..332 | 9..270 | 95 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 00:22:34 Download gff for
BS15779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6984192..6984279 | 9..96 | 93 | <- | Plus |
3L | 6984343..6984518 | 97..270 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 03:20:47 Download gff for
BS15779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6977292..6977379 | 9..96 | 93 | <- | Plus |
arm_3L | 6977443..6977618 | 97..270 | 97 | | Plus |
BS15779.5prime Sequence
270 bp (270 high quality bases) assembled on 2006-12-21
> BS15779.5prime
GAAGTTATCAGTCGACATGTTCAAAGTGCGCAGCTTGGCGCTCATGAAAT
TGAGTGAAGGCGTTTTCGGCGCACGACTAATGGCCAAATCGCCGAAGGAT
TCGGGCAAGGATTCTTGCAAGGGTGCCGATTCCAAAAAGAAGAAAGACAA
AAAGAAGAAGGATATGTGTGGCAGAACTGTTGTTCCCACTTCACCACGTT
GCAAAAACAAACCCGGCGGCTCAGACAAATCCAAAGATGAGTGCAAGAAA
AAGTAGAAGCTTTCTAGACC
BS15779.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32388-PA | 240 | CG32388-RA | 1..240 | 17..256 | 1200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 12:23:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43439-RA | 990 | CG43439-RA | 84..324 | 16..256 | 1205 | 100 | Plus |
CG32388-RA | 990 | CG32388-RA | 84..324 | 16..256 | 1205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 12:23:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6984343..6984503 | 176..16 | 805 | 100 | Minus |
3L | 28110227 | 3L | 6984200..6984279 | 256..177 | 400 | 100 | Minus |
Blast to na_te.dros performed 2015-01-30 12:23:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 1724..1786 | 150..212 | 99 | 61.9 | Plus |
BS15779.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:37:18 Download gff for
BS15779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32388-PA | 1..240 | 17..256 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:17:07 Download gff for
BS15779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32388-PA | 1..240 | 17..256 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:35:45 Download gff for
BS15779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32388-RA | 67..332 | 2..264 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:00:27 Download gff for
BS15779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32388-RA | 67..332 | 2..264 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 14:00:27 Download gff for
BS15779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6984192..6984279 | 177..264 | 96 | <- | Minus |
3L | 6984343..6984519 | 2..176 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:35:45 Download gff for
BS15779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6977292..6977379 | 177..264 | 96 | <- | Minus |
arm_3L | 6977443..6977619 | 2..176 | 97 | | Minus |
BS15779.complete Sequence
272 bp assembled on 2006-11-29
GenBank Submission: FJ637964
> BS15779.complete
GAAGTTATCAGTCGACATGTTCAAAGTGCGCAGCTTGGCGCTCATGAAAT
TGAGTGAAGGCGTTTTCGGCGCACGACTAATGGCCAAATCGCCGAAGGAT
TCGGGCAAGGATTCTTGCAAGGGTGCCGATTCCAAAAAGAAGAAAGACAA
AAAGAAGAAGGATATGTGTGGCAGAACTGTTGTTCCCACTTCACCACGTT
GCAAAAACAAACCCGGCGGCTCAGACAAATCCAAAGATGAGTGCAAGAAA
AAGTAGAAGCTTTCTAGACCAT
BS15779.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:47:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32388-RA | 240 | CG32388-PA | 1..240 | 17..256 | 1200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:47:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43439-RA | 990 | CG43439-RA | 84..324 | 16..256 | 1205 | 100 | Plus |
CG32388-RA | 990 | CG32388-RA | 84..324 | 16..256 | 1205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:47:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6984343..6984503 | 176..16 | 805 | 100 | Minus |
3L | 28110227 | 3L | 6984200..6984279 | 256..177 | 400 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:47:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 1724..1786 | 150..212 | 99 | 61.9 | Plus |
BS15779.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:45:44 Download gff for
BS15779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32388-RA | 1..240 | 17..256 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:12:31 Download gff for
BS15779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32388-RA | 53..318 | 2..264 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:41 Download gff for
BS15779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32388-RA | 90..324 | 22..256 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:45:45 Download gff for
BS15779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32388-RA | 53..318 | 2..264 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:38 Download gff for
BS15779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32388-RA | 90..324 | 22..256 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:38 Download gff for
BS15779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6984200..6984279 | 177..256 | 100 | <- | Minus |
3L | 6984343..6984497 | 22..176 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:41 Download gff for
BS15779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6977300..6977379 | 177..256 | 100 | <- | Minus |
arm_3L | 6977443..6977597 | 22..176 | 100 | | Minus |
BS15779.pep Sequence
Translation from 16 to 255
> BS15779.pep
MFKVRSLALMKLSEGVFGARLMAKSPKDSGKDSCKGADSKKKKDKKKKDM
CGRTVVPTSPRCKNKPGGSDKSKDECKKK*
BS15779.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32388-PA | 79 | CG32388-PA | 1..79 | 1..79 | 415 | 100 | Plus |